FvH4_2g27480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001875
Physical Location & Seq
Forward (+)
21808970 .. 21809637
668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27480.t1

Sequence Viewer

Length: 369 bp
ATGGCAGCTTTAAAGTTAATCTGTATCACCATCCTTTGTGGTCTCATTGTGGGAGGTGATTGTCAACCTTGCACTGAGAAGAATCTGGTTATTTCACAGTCACCAACAGGAAAGTTGGTTCAAAATAAGCCCGAATGGAGCCTAACGATCACCAACAACTGCATATGTACTCAAATGAGTGTTAAACTAAGCTGCGATGGCTTTCAATCTGTCGAAAAGATTGATTCTTCAGTCTTGAGCAAATCTGGCAGCGTGTGTCTCGTCAAGGGTGGCCAACCTATCTATGGGAATAGCAAGTTCAGTTTTACCTATGCATCGGCCACTTCGTTTCCTTTCAAACCACTCTCGTCTCAAGTTGCTTGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.92

Weight (kDa)

8.6

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 26 - 120 3.7e-30 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 271, 318
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 122, 206, 337
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 8, 192
AluI AGCT 2 cut(s) 8, 192
Alw26I GTCTC 3 cut(s) 47, 263, 354
AoxI GGCC 2 cut(s) 271, 318
ApeKI GCWGC 3 cut(s) 5, 192, 249
AsuHPI GGTGA 4 cut(s) 19, 68, 93, 142
BalI TGGCCA 1 cut(s) 273
BbvI GCAGC 3 cut(s) 17, 179, 261
BccI CCATC 2 cut(s) 38, 191
BcoDI GTCTC 3 cut(s) 47, 263, 354
BisI GCNGC 3 cut(s) 6, 193, 250
BlsI GCNGC 3 cut(s) 7, 194, 251
BmiI GGNNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 256, 336
BsaI GGTCTC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 3 cut(s) 17, 179, 261
BshFI GGCC 2 cut(s) 273, 320
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 3 cut(s) 47, 263, 354
BsmBI CGTCTC 1 cut(s) 354
BsnI GGCC 2 cut(s) 273, 320
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 147
BspANI GGCC 2 cut(s) 273, 320
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 47
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 75, 188, 366
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 3 cut(s) 47, 263, 354
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 198, 246
BstV1I GCAGC 3 cut(s) 17, 179, 261
BsuRI GGCC 2 cut(s) 273, 320
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 168
CviJI RGCY 7 cut(s) 8, 130, 141, 192, 201, 273, 320
CviKI_1 RGCY 7 cut(s) 8, 130, 141, 192, 201, 273, 320
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 3 cut(s) 75, 188, 366
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 2 cut(s) 271, 318
Eco31I GGTCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 354
FaiI YATR 4 cut(s) 164, 166, 285, 312
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 6, 193, 250
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 6, 193, 250
GluI GCNGC 3 cut(s) 6, 193, 250
HaeIII GGCC 2 cut(s) 273, 320
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 2 cut(s) 82, 224
HphI GGTGA 4 cut(s) 19, 68, 93, 142
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 72, 162, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 246
HpyF3I CTNAG 3 cut(s) 75, 188, 366
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 3 cut(s) 71, 93, 231
Lsp1109I GCAGC 3 cut(s) 17, 179, 261
LweI GCATC 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 99
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 91, 219
MlsI TGGCCA 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 316
MscI TGGCCA 1 cut(s) 273
MseI TTAA 3 cut(s) 11, 17, 183
Msp20I TGGCCA 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 198, 246
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PfeI GAWTC 2 cut(s) 82, 224
PkrI GCNGC 3 cut(s) 7, 194, 251
PspN4I GGNNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 11, 17, 183
SatI GCNGC 3 cut(s) 6, 193, 250
Sau3AI GATC 1 cut(s) 147
SetI ASST 6 cut(s) 10, 58, 70, 194, 280, 311
SfaNI GCATC 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 235, 351
SmoI CTYRAG 2 cut(s) 235, 351
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 2 cut(s) 82, 224
Tru1I TTAA 3 cut(s) 11, 17, 183
Tru9I TTAA 3 cut(s) 11, 17, 183
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 3 cut(s) 5, 192, 249
Tsp45I GTSAC 1 cut(s) 99
TspRI CASTG 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.