Rw6G025190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001875
Physical Location & Seq
Forward (+)
48468055 .. 48469635
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025190.1

Sequence Viewer

Length: 366 bp
ATGTGCTCTCGTCGACTTTGCTTGGGTTTGGGCCTAGGTCTTGGGGGTGCAATGGACTGTCAGTGCTCTAAGAACAGGCTCAAAGTCACACAGTATCGAACACGAGAGTTGTTGCGAAACAAGCCAGTGTGGAGGGTGAAGATCACCAATGACTGCCCCTGTACTCAACTCGATGTTAAACTAAGTTGCAAGGGATTTCAAGCCGTGCAAGATATTGGTCCTAAGCCAGTCTTGGCCAAATCCGGTGGCGAGTGTCTCCTCAACGATGGCCAACCTATCTATGCGCACGAGGATTTCATTTTCACCTATGCTTTTGGCACTCGGTTTCCTTTTCACCTGCTCTCCTCCCGAATTGCCTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.2

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 24 - 116 1e-25 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 345
Acc16I TGCGCA 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 345
AccI GTMKAC 1 cut(s) 13
AcoI YGGCCR 2 cut(s) 234, 268
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 200
Alw21I GWGCWC 2 cut(s) 8, 68
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 3 cut(s) 31, 234, 268
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 31, 218
AsuHPI GGTGA 4 cut(s) 136, 148, 295, 326
AvaII GGWCC 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 34
BalI TGGCCA 2 cut(s) 236, 270
BauI CACGAG 2 cut(s) 102, 287
Bbv12I GWGCWC 2 cut(s) 8, 68
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 345
BlnI CCTAGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 31, 218
Bpu10I CCTNAGC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 2 cut(s) 125, 227
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 125, 227
BseRI GAGGAG 2 cut(s) 248, 334
BshFI GGCC 3 cut(s) 33, 236, 270
BsiHKAI GWGCWC 2 cut(s) 8, 68
BsiSI CCGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 3 cut(s) 33, 236, 270
Bsp1286I GDGCHC 2 cut(s) 8, 68
Bsp143I GATC 1 cut(s) 141
BspANI GGCC 3 cut(s) 33, 236, 270
BspMI ACCTGC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 2 cut(s) 125, 227
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 141
BssSI CACGAG 2 cut(s) 102, 287
BssT1I CCWWGG 1 cut(s) 34
Bst2BI CACGAG 2 cut(s) 102, 287
Bst4CI ACNGT 2 cut(s) 59, 93
BstDEI CTNAG 3 cut(s) 69, 182, 222
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 121
BsuRI GGCC 3 cut(s) 33, 236, 270
BtsIMutI CAGTG 2 cut(s) 68, 132
BveI ACCTGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 2 cut(s) 31, 218
Csp6I GTAC 1 cut(s) 162
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviJI RGCY 7 cut(s) 33, 79, 124, 203, 226, 236, 270
CviKI_1 RGCY 7 cut(s) 33, 79, 124, 203, 226, 236, 270
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 69, 182, 222
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 2 cut(s) 234, 268
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaiI YATR 2 cut(s) 282, 309
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FblI GTMKAC 1 cut(s) 13
FspAI RTGCGCAY 1 cut(s) 285
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 1 cut(s) 285
HaeIII GGCC 3 cut(s) 33, 236, 270
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 286
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HpaII CCGG 1 cut(s) 243
HphI GGTGA 4 cut(s) 136, 148, 295, 326
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 59, 93
HpyCH4V TGCA 3 cut(s) 50, 189, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 69, 182, 222
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 61, 138, 172, 240, 256, 350
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 8, 68
MlsI TGGCCA 2 cut(s) 236, 270
MluCI AATT 1 cut(s) 351
MluNI TGGCCA 2 cut(s) 236, 270
MnlI CCTC 4 cut(s) 126, 269, 283, 355
Mox20I TGGCCA 2 cut(s) 236, 270
MscI TGGCCA 2 cut(s) 236, 270
MseI TTAA 2 cut(s) 177, 364
Msp20I TGGCCA 2 cut(s) 236, 270
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 285
PaqCI CACCTGC 1 cut(s) 345
PspPI GGNCC 2 cut(s) 31, 218
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SalI GTCGAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 177, 364
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 31, 218
SduI GDGCHC 2 cut(s) 8, 68
SetI ASST 4 cut(s) 40, 277, 308, 339
SinI GGWCC 1 cut(s) 218
Sse9I AATT 1 cut(s) 351
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 2 cut(s) 59, 93
TaqI TCGA 3 cut(s) 13, 97, 171
TasI AATT 1 cut(s) 351
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 2 cut(s) 177, 364
Tru9I TTAA 2 cut(s) 177, 364
TscAI CASTG 2 cut(s) 68, 132
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 2 cut(s) 68, 132
VpaK11BI GGWCC 1 cut(s) 218
XmaJI CCTAGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.