Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001875

Physical Location & Seq

Genomic Coordinates Reverse (-)

2149845 .. 2150535

Gene Structure 691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCACCATTGCTAAGTCGCTTGCTTTGATTGTCCTCTTCAGTCTAACTAGCAAAGGGTTTTGTGACAAATGTGTTTTGGGCAACATTGAGATCGGTACCAGCCGGAGTGGAGCCGTGGTTGCCGGCAAACCGGAATGGAACGTGGTTGTGAAAAACAACTGCCAATGTACTCAATCGCTGATAACGGTGAGCTGCCAAGGATTTCAGTCATCGTCTCCGGTTGATCCAAAGAAACTAACGAAGCATGGTGACAAGTGCATCATCAACATGGGGAAGCCCTTGCCCGGCTTTGCTTCTGTGTCATTCTCTTATGCTTGGGATCCTCCCTTCAATTTAGTGCCTGTGTCGTCTGTCGTCATCCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

124

Amino Acids

13.02

Weight (kDa)

8.92

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	29 - 117	4.6e-27	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32100 AT4G32105 AT4G32110
fragaria_vesca	FvH4_2g27480 FvH4_2g28690 FvH4_2g28701 FvH4_2g28710 FvH4_2g28712 FvH4_5g03660 FvH4_5g25410
malus_domestica	MD08G1079500.v1.1 MD08G1151500.v1.1 MD15G1128800.v1.1
prunus_persica	Prupe.1G484000_v2.0.a1 Prupe.1G484100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286461 RchiOBHm_Chr6g0297461 RchiOBHm_Chr6g0297491
rosa_laevigata	RLG00000004068 RLG00000011592 RLG00000011595 RLG00000011596 RLG00000012570
rosa_multiflora	Rmu_sc0008467.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001490 Rroxscaffold_7G00170440 Rroxscaffold_7G00170460
rosa_rugosa	Rorug06G0055900 Rorug06G0179800 Rorug06G0272400 Rorug06G0272600 Rorug07G0030000
rosa_samantha	Rh6AG383500 Rh6AG383600 Rh6AG383800 Rh6BG391700 Rh6BG392000 Rh6CG296400 Rh6CG397300 Rh6CG397700 Rh6DG288200 Rh6DG384200
rosa_wichuraiana	Rw6G025190 Rw6G033400 Rw6G033410 Rw6G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	221, 317, 330
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	25
AfaI	GTAC	2 cut(s)	100, 172
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	3 cut(s)	221, 317, 330
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	195
Asp718I	GGTACC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	202, 263
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	3 cut(s)	100, 115, 324
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	117, 199
BsaWI	WCCGGW	2 cut(s)	133, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	117, 199
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	98
BsiSI	CCGG	5 cut(s)	106, 126, 134, 221, 288
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	93, 226, 322
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	100, 115, 324
BspPI	GGATC	3 cut(s)	221, 317, 330
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	117, 199
BssMI	GATC	3 cut(s)	93, 226, 322
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	24, 127
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	96, 229, 325
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	3 cut(s)	93, 226, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 122
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	24, 127
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	99, 171
CviAII	CATG	2 cut(s)	248, 271
CviJI	RGCY	6 cut(s)	5, 105, 116, 195, 280, 291
CviKI_1	RGCY	6 cut(s)	5, 105, 116, 195, 280, 291
CviQI	GTAC	2 cut(s)	99, 171
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	95, 228, 324
DpnII	GATC	3 cut(s)	93, 226, 322
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	251, 274
FaiI	YATR	3 cut(s)	249, 272, 315
FatI	CATG	2 cut(s)	247, 270
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	106, 126, 134, 221, 288
Hin1II	CATG	2 cut(s)	251, 274
HpaII	CCGG	5 cut(s)	106, 126, 134, 221, 288
HphI	GGTGA	2 cut(s)	202, 263
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 122
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	251, 274
KpnI	GGTACC	1 cut(s)	102
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	93, 226, 322
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	115, 119, 139, 147, 234, 301, 357
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	65, 251
MalI	GATC	3 cut(s)	95, 228, 324
MboI	GATC	3 cut(s)	93, 226, 322
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	47, 336
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	370
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	106, 126, 134, 221, 288
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	11, 122
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	93, 226, 322
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	251, 274
NlaIV	GGNNCC	3 cut(s)	100, 115, 324
NmuCI	GTSAC	2 cut(s)	65, 251
PdiI	GCCGGC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	100, 115, 324
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	100, 172
RsaNI	GTAC	2 cut(s)	99, 171
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	370
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	3 cut(s)	93, 226, 322
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	2 cut(s)	147, 197
SfaNI	GCATC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	147
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	65, 251
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	2 cut(s)	65, 251
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.