Rroxscaffold_1G00001490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001875
Physical Location & Seq
Reverse (-)
1803943 .. 1804687
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001490.1

Sequence Viewer

Length: 372 bp
ATGGCCACCATCGCCAACTCTCTCACTGTCATTGTCCTCTTCAGTCTCATTAGCCATGGCCAGTGCTTTGGTTGCTCTGTGAAGGATATCTCAATTGAACAATCTCGGACGGGAAAGTTGGTCCAAAACAAGCCAGAATGGAATGTGACGATCGCGAATGGTTGCTCGTGTTCTCAACTGAATGTTAAACTAGGCTGCGATGGATTTCAAACTGTTGAAGACATTGATCCTTCCATTTTAAGTGTATCTGGTGGTGAGTGTCTGGTCAAGAATGGTCAACCTCTCTATGCCAATGGAGGTTTCAACTTCATCTATGCTTGGGACTCTTCATTTTCTTTCAATCCAATCTCCTCCCAAATTGCTTGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.13

Weight (kDa)

4.79

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 119 1.1e-30 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 3, 58
AcuI CTGAAG 1 cut(s) 25
AgsI TTSAA 5 cut(s) 98, 209, 218, 304, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 3, 58
ApeKI GCWGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 121
BalI TGGCCA 2 cut(s) 5, 60
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 182
BccI CCATC 2 cut(s) 17, 194
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 5, 60
BsiEI CGRYCG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 5, 60
Bsp143I GATC 2 cut(s) 150, 226
Bsp19I CCATGG 1 cut(s) 55
Bsp68I TCGCGA 1 cut(s) 155
BspANI GGCC 2 cut(s) 5, 60
BspFNI CGCG 1 cut(s) 155
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 150, 226
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 28, 214
Bst6I CTCTTC 2 cut(s) 44, 331
BstC8I GCNNGC 1 cut(s) 364
BstDSI CCRYGG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 2 cut(s) 153, 229
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 150, 226
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 11, 72
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 5, 60
BtgI CCRYGG 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 24, 68
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 56
CviJI RGCY 5 cut(s) 5, 54, 60, 133, 195
CviKI_1 RGCY 5 cut(s) 5, 54, 60, 133, 195
DpnI GATC 2 cut(s) 152, 228
DpnII GATC 2 cut(s) 150, 226
EaeI YGGCCR 2 cut(s) 3, 58
Eam1104I CTCTTC 2 cut(s) 44, 331
EarI CTCTTC 2 cut(s) 44, 331
Eco130I CCWWGG 1 cut(s) 55
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 25
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 288, 315
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 5, 60
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 1 cut(s) 323
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 154, 268, 369
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 76, 240
HpyCH4III ACNGT 2 cut(s) 28, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 72
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 2 cut(s) 150, 226
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 4 cut(s) 74, 147, 234, 248
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 152, 228
MboI GATC 2 cut(s) 150, 226
MboII GAAGA 3 cut(s) 31, 230, 318
MfeI CAATTG 1 cut(s) 93
MlsI TGGCCA 2 cut(s) 5, 60
MluCI AATT 2 cut(s) 93, 357
MluNI TGGCCA 2 cut(s) 5, 60
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 4 cut(s) 47, 290, 291, 361
Mox20I TGGCCA 2 cut(s) 5, 60
MscI TGGCCA 2 cut(s) 5, 60
MseI TTAA 2 cut(s) 186, 239
Msp20I TGGCCA 2 cut(s) 5, 60
MunI CAATTG 1 cut(s) 93
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 11, 72
NcoI CCATGG 1 cut(s) 55
NdeII GATC 2 cut(s) 150, 226
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 145
NruI TCGCGA 1 cut(s) 155
PkrI GCNGC 1 cut(s) 197
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 121
PvuI CGATCG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 155
SaqAI TTAA 2 cut(s) 186, 239
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 150, 226
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 317
SetI ASST 2 cut(s) 283, 301
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 93, 357
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 28, 214
TasI AATT 2 cut(s) 93, 357
Tru1I TTAA 2 cut(s) 186, 239
Tru9I TTAA 2 cut(s) 186, 239
TscAI CASTG 2 cut(s) 31, 68
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 298, 318
TspRI CASTG 2 cut(s) 31, 68
VpaK11BI GGWCC 1 cut(s) 121
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.