RLG00000011592

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001875
Physical Location & Seq
Forward (+)
10779704 .. 10780210
507 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011592

Sequence Viewer

Length: 390 bp
ATGGCAGCTATTATGAAATTCCTTTACATCGCGGTCCTAATTTGCAGTCTCATTATGGGAGGCGAGTCTCAACATTGCAACCTAAATAATCTCAAAATTACACAATCAACAACTGGAAAGTCTGTTCAAAGTCGACCAGAGTGGAAAGTAACAATCACGAATGACTGCTCATGTACTCAACTGAATGTTAAGATTAGTTCTCCTGGGTTTCAAACTGTGGAGCCAATGGCATCTTCAATCTTGAGCAAATCTGGTAACGACTATCTTGTTAATAGTGGTAAACCTATCTATGCGTATGAGAATTTCAGTTTCACCTACGCTTGGGCCACTCAGTTTACTTTCAAACCATCAGACTCCACAGTTGCTTGTTCAGCTGAAGGAAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.15

Weight (kDa)

8.27

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 29 - 123 1.5e-27 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AccII CGCG 1 cut(s) 32
AciI CCGC 1 cut(s) 32
AcsI RAATTY 2 cut(s) 17, 301
AfaI GTAC 2 cut(s) 175, 386
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 4 cut(s) 128, 212, 237, 343
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 8, 374
AluI AGCT 2 cut(s) 8, 374
Alw26I GTCTC 2 cut(s) 53, 72
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 17, 301
AspS9I GGNCC 2 cut(s) 34, 324
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 53, 72
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 324
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 53, 72
BsnI GGCC 1 cut(s) 326
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 217, 361
BstDEI CTNAG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 32
BstMAI GTCTC 2 cut(s) 53, 72
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 34, 324
Csp6I GTAC 2 cut(s) 174, 385
CviAII CATG 1 cut(s) 171
CviJI RGCY 4 cut(s) 8, 223, 326, 374
CviKI_1 RGCY 4 cut(s) 8, 223, 326, 374
CviQI GTAC 2 cut(s) 174, 385
DdeI CTNAG 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 174
FaiI YATR 5 cut(s) 14, 56, 172, 291, 297
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 1 cut(s) 174
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 2 cut(s) 65, 353
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 134, 281, 336
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 2 cut(s) 157, 241
Hpy8I GTNNAC 3 cut(s) 134, 281, 336
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 217, 361
HpyCH4V TGCA 2 cut(s) 45, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 1 cut(s) 174
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 99, 150, 189, 216, 237
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 148, 254
MboII GAAGA 1 cut(s) 225
MluCI AATT 4 cut(s) 17, 39, 96, 301
MlyI GAGTC 2 cut(s) 74, 347
MnlI CCTC 1 cut(s) 53
MseI TTAA 2 cut(s) 189, 270
MspA1I CMGCKG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 371
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 73, 347
PpsI GAGTC 2 cut(s) 73, 347
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 34, 324
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 175, 386
RsaNI GTAC 2 cut(s) 174, 385
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 189, 270
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 34, 324
ScaI AGTACT 1 cut(s) 386
SchI GAGTC 2 cut(s) 74, 347
ScrFI CCNGG 1 cut(s) 204
SetI ASST 5 cut(s) 10, 84, 286, 317, 376
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 17, 39, 96, 301
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 217, 361
TaqI TCGA 1 cut(s) 133
TasI AATT 4 cut(s) 17, 39, 96, 301
TatI WGTACW 2 cut(s) 173, 384
Tru1I TTAA 2 cut(s) 189, 270
Tru9I TTAA 2 cut(s) 189, 270
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 17, 301
XmiI GTMKAC 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.