Rh6AG383800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001875
Physical Location & Seq
Reverse (-)
58341065 .. 58353576
12512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG383800.1

Sequence Viewer

Length: 501 bp
ATGGCAGCTACAATGAAATTCCTCTGCATTGCCATCCTTTGCAGCCTCATTATGGGAGGCGAGTTTCAACATTGCAACCTAAATAATCTCAAAATTACACATTCAACAACTGGAAAGTCTGTTCAAAGTCGGCCAGAGTGGAAAGTAACAATCACGAAAGACTGCTCATGTACTCAACTCAATGTTAAGAGTAGTTCTCCTGGGTTTCAAACTGTGGAGCCAATGGCATCTTCAATCTTGAGCAAATCCGGTAACGACTATCTTGTTAATAGTGGGTTTGTGCAGAGAGCGGCGGCGGGCCTCTGGTGGTCGTCTGCTCTAGCTTTGACGCGGATTTTCGTCGTGGTCGAGAGATTTACAGGGTGCAAAGGCTGGATCTTGGTCGAGTCTTGGAATTTGATCTTTGGCCGGAAGGTTTTTAGACTGGATCGGGATTGGGCTTGTTGTTCGGTCACTCGATTTGTTGAGGACATCAACCAAACAGGCGGCGGCGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

8.86

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 28 - 92 4.5e-14 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 1 cut(s) 331
AciI CCGC 6 cut(s) 290, 293, 296, 331, 486, 489
AclWI GGATC 2 cut(s) 383, 435
AcoI YGGCCR 2 cut(s) 131, 406
AcsI RAATTY 2 cut(s) 17, 394
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 5 cut(s) 68, 105, 125, 209, 234
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 2 cut(s) 8, 323
AluI AGCT 2 cut(s) 8, 323
AlwI GGATC 2 cut(s) 383, 435
AoxI GGCC 3 cut(s) 131, 298, 406
ApeKI GCWGC 2 cut(s) 5, 42
ApoI RAATTY 2 cut(s) 17, 394
AspS9I GGNCC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 17, 54
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 320
BisI GCNGC 6 cut(s) 6, 43, 291, 294, 487, 490
BlsI GCNGC 6 cut(s) 7, 44, 292, 295, 488, 491
Bme1390I CCNGG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 115, 429
Bse3DI GCAATG 2 cut(s) 27, 70
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 27, 70
BseNI ACTGG 2 cut(s) 115, 429
BseXI GCAGC 2 cut(s) 17, 54
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 3 cut(s) 133, 300, 408
BsiSI CCGG 2 cut(s) 249, 409
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 3 cut(s) 133, 300, 408
Bsp143I GATC 3 cut(s) 375, 399, 427
BspACI CCGC 6 cut(s) 290, 293, 296, 331, 486, 489
BspANI GGCC 3 cut(s) 133, 300, 408
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 2 cut(s) 383, 435
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 2 cut(s) 27, 70
BsrI ACTGG 2 cut(s) 115, 429
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 375, 399, 427
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 298
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 3 cut(s) 378, 402, 430
BstMBI GATC 3 cut(s) 375, 399, 427
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 17, 54
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 3 cut(s) 133, 300, 408
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 168
CviJI RGCY 9 cut(s) 8, 45, 133, 220, 300, 323, 372, 408, 440
CviKI_1 RGCY 9 cut(s) 8, 45, 133, 220, 300, 323, 372, 408, 440
CviQI GTAC 1 cut(s) 171
DpnI GATC 3 cut(s) 377, 401, 429
DpnII GATC 3 cut(s) 375, 399, 427
EaeI YGGCCR 2 cut(s) 131, 406
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 53, 169
FatI CATG 1 cut(s) 167
FauI CCCGC 1 cut(s) 289
Fnu4HI GCNGC 6 cut(s) 6, 43, 291, 294, 487, 490
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 6 cut(s) 6, 43, 291, 294, 487, 490
FspBI CTAG 1 cut(s) 320
GluI GCNGC 6 cut(s) 6, 43, 291, 294, 487, 490
HaeIII GGCC 3 cut(s) 133, 300, 408
HapII CCGG 2 cut(s) 249, 409
HgaI GACGC 1 cut(s) 337
Hin1II CATG 1 cut(s) 171
HinfI GANTC 1 cut(s) 386
HpaII CCGG 2 cut(s) 249, 409
Hpy188III TCNNGA 4 cut(s) 154, 238, 349, 431
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 27, 42, 75, 283, 366
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 3 cut(s) 375, 399, 427
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 2 cut(s) 17, 54
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 145, 251, 451
MalI GATC 3 cut(s) 377, 401, 429
MbiI CCGCTC 1 cut(s) 290
MboI GATC 3 cut(s) 375, 399, 427
MboII GAAGA 1 cut(s) 222
MflI RGATCY 1 cut(s) 375
MluCI AATT 3 cut(s) 17, 93, 394
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 5 cut(s) 32, 50, 56, 311, 460
MseI TTAA 2 cut(s) 186, 267
MspI CCGG 2 cut(s) 249, 409
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 331
NdeII GATC 3 cut(s) 375, 399, 427
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PkrI GCNGC 6 cut(s) 7, 44, 292, 295, 488, 491
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 186, 267
SatI GCNGC 6 cut(s) 6, 43, 291, 294, 487, 490
Sau3AI GATC 3 cut(s) 375, 399, 427
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 201
SetI ASST 4 cut(s) 10, 81, 325, 417
SfaNI GCATC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 3 cut(s) 17, 93, 394
SsiI CCGC 6 cut(s) 290, 293, 296, 331, 486, 489
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 348, 384, 457
TaqII GACCGA 1 cut(s) 439
TasI AATT 3 cut(s) 17, 93, 394
TatI WGTACW 1 cut(s) 170
TauI GCSGC 4 cut(s) 293, 296, 489, 492
Tru1I TTAA 2 cut(s) 186, 267
Tru9I TTAA 2 cut(s) 186, 267
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 5, 42
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 2 cut(s) 17, 394
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.