Rroxscaffold_7G00170460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001875
Physical Location & Seq
Forward (+)
10920108 .. 10924953
4846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170460.1

Sequence Viewer

Length: 795 bp
ATGACCTATCCGTTTTACCGTTATGGCCTTCTTTCGTCAAATCTTGCTATATGCTTTCATGGAGAATTCTCCGCTCGCTCTCTCCCCGTGAAACTTTTTGCAACTATGAAGCTTGGATGGCACGGAAAGATTATAGACACCGTTATCGAATTTCGAGTAAGGCCTTTGCTTGCGCAAGCATTGGAAAAGGGAAACTTTGATGGTCTTGTTGATGCTAGGTTGCAAAATGATTACAACTCCAGCGAAATGGCTTGTATGGTTGCTCGCGCTGCTGCTTGTGAGCGTCATTATGCCCGTCGTTGGCCAAGAGTGAGCCAGGAAGAAATGTTGAAATTTAGAAAGTTGGCACTAGAAAGCGGAGAGCCAGATCAAGGAAGTAGTCAGACCAGTGGGCTCGGCACTTTGGCCTGCACCAATCTGCCTCCAGTACAGCAGCAGCAGCAGCAGCTACACATCATGAAGCAGTTTCTCTGCGCGCAGTTTTCCTCTTCGGTCTCATTGTTGGAGGATATCTCAATTGAACAATCTCAAACGGGAAAGTCGGTCCAAAACAAGCCAGAATGGAATGTGACGATCGCGAATGGTTGCTCGTGTTCTCAACTGAATGTTAAACTAGGCTGCGATGGATTTCAAACTGTTGAAGACATTGATCCTTCCATTTTAAGTGTATCTGGTGGCGAGTGTCTGGTCAAGAATGGTCAACCTGTCTATGCCAATGGAGGTTTCAACTTCATCTATGCTTGGGACACTTCATTTTCTTTCAATCCAATCTCCTCCCAAATTGCTTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.2

Weight (kDa)

6.1

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 169 - 260 1.7e-29 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 3 cut(s) 267, 476, 578
AciI CCGC 2 cut(s) 72, 357
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 3 cut(s) 65, 149, 332
AfaI GTAC 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 300, 371
AgsI TTSAA 6 cut(s) 331, 521, 632, 641, 727, 763
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AluBI AGCT 2 cut(s) 112, 448
AluI AGCT 2 cut(s) 112, 448
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 1 cut(s) 644
AoxI GGCC 4 cut(s) 25, 161, 302, 405
ApeKI GCWGC 8 cut(s) 269, 272, 433, 436, 439, 442, 445, 618
ApoI RAATTY 3 cut(s) 65, 149, 332
AspLEI GCGC 4 cut(s) 175, 269, 476, 478
AspS9I GGNCC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 8 cut(s) 256, 259, 445, 448, 451, 454, 457, 605
BccI CCATC 3 cut(s) 111, 194, 617
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 3 cut(s) 216, 350, 614
BisI GCNGC 8 cut(s) 270, 273, 434, 437, 440, 443, 446, 619
BlsI GCNGC 8 cut(s) 271, 274, 435, 438, 441, 444, 447, 620
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 2 cut(s) 223, 408
BsaI GGTCTC 1 cut(s) 499
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 371
Bse1I ACTGG 2 cut(s) 387, 425
BseBI CCWGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 300, 371
BseNI ACTGG 2 cut(s) 387, 425
BsePI GCGCGC 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 763
BseXI GCAGC 8 cut(s) 256, 259, 445, 448, 451, 454, 457, 605
BsgI GTGCAG 1 cut(s) 394
Bsh1236I CGCG 3 cut(s) 267, 476, 578
Bsh1285I CGRYCG 1 cut(s) 576
BshFI GGCC 4 cut(s) 27, 163, 304, 407
BsiEI CGRYCG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 300, 371
BsmAI GTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 758
BsnI GGCC 4 cut(s) 27, 163, 304, 407
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 367, 573, 649
Bsp68I TCGCGA 1 cut(s) 578
BspACI CCGC 2 cut(s) 72, 357
BspANI GGCC 4 cut(s) 27, 163, 304, 407
BspFNI CGCG 3 cut(s) 267, 476, 578
BspHI TCATGA 1 cut(s) 456
BspPI GGATC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 387, 425
BssHII GCGCGC 1 cut(s) 474
BssMI GATC 3 cut(s) 367, 573, 649
BssSI CACGAG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 3 cut(s) 20, 142, 637
Bst6I CTCTTC 1 cut(s) 493
BstC8I GCNNGC 7 cut(s) 76, 171, 177, 265, 409, 476, 787
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 3 cut(s) 267, 476, 578
BstHHI GCGC 4 cut(s) 175, 269, 476, 478
BstKTI GATC 3 cut(s) 370, 576, 652
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 3 cut(s) 367, 573, 649
BstMCI CGRYCG 1 cut(s) 576
BstMWI GCNNNNNNNGC 5 cut(s) 118, 269, 439, 442, 445
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 3 cut(s) 267, 476, 578
BstV1I GCAGC 8 cut(s) 256, 259, 445, 448, 451, 454, 457, 605
BstV2I GAAGAC 1 cut(s) 648
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 4 cut(s) 27, 163, 304, 407
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 394
BtuMI TCGCGA 1 cut(s) 578
Cac8I GCNNGC 7 cut(s) 76, 171, 177, 265, 409, 476, 787
CciI TCATGA 1 cut(s) 456
CfoI GCGC 4 cut(s) 175, 269, 476, 478
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 428
CviAII CATG 2 cut(s) 59, 457
CviQI GTAC 1 cut(s) 428
DpnI GATC 3 cut(s) 369, 575, 651
DpnII GATC 3 cut(s) 367, 573, 649
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Eco147I AGGCCT 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 396
FaeI CATG 2 cut(s) 62, 460
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 1 cut(s) 758
FatI CATG 2 cut(s) 58, 456
Fnu4HI GCNGC 8 cut(s) 270, 273, 434, 437, 440, 443, 446, 619
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 8 cut(s) 270, 273, 434, 437, 440, 443, 446, 619
FspBI CTAG 3 cut(s) 216, 350, 614
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 4 cut(s) 174, 268, 475, 477
GluI GCNGC 8 cut(s) 270, 273, 434, 437, 440, 443, 446, 619
GsuI CTGGAG 2 cut(s) 223, 408
HaeIII GGCC 4 cut(s) 27, 163, 304, 407
HgaI GACGC 1 cut(s) 272
HhaI GCGC 4 cut(s) 175, 269, 476, 478
Hin1II CATG 2 cut(s) 62, 460
Hin6I GCGC 4 cut(s) 173, 267, 474, 476
HinP1I GCGC 4 cut(s) 173, 267, 474, 476
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HindIII AAGCTT 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 4 cut(s) 457, 577, 691, 792
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 38, 663
HpyCH4III ACNGT 3 cut(s) 20, 142, 637
HpyCH4V TGCA 3 cut(s) 101, 223, 411
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 269, 439, 442, 445
Hsp92II CATG 2 cut(s) 62, 460
HspAI GCGC 4 cut(s) 173, 267, 474, 476
Kzo9I GATC 3 cut(s) 367, 573, 649
Lsp1109I GCAGC 8 cut(s) 256, 259, 445, 448, 451, 454, 457, 605
LweI GCATC 1 cut(s) 202
MaeI CTAG 3 cut(s) 216, 350, 614
MaeIII GTNAC 1 cut(s) 568
MalI GATC 3 cut(s) 369, 575, 651
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 367, 573, 649
MboII GAAGA 3 cut(s) 332, 480, 653
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 1 cut(s) 396
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 5 cut(s) 65, 149, 332, 516, 780
MluNI TGGCCA 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 5 cut(s) 432, 496, 499, 713, 784
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 2 cut(s) 609, 662
Msp20I TGGCCA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 3 cut(s) 267, 476, 578
MwoI GCNNNNNNNGC 5 cut(s) 118, 269, 439, 442, 445
NdeII GATC 3 cut(s) 367, 573, 649
NlaIII CATG 2 cut(s) 62, 460
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 568
NruI TCGCGA 1 cut(s) 578
NsbI TGCGCA 1 cut(s) 174
PagI TCATGA 1 cut(s) 456
PauI GCGCGC 1 cut(s) 474
PceI AGGCCT 1 cut(s) 163
PkrI GCNGC 8 cut(s) 271, 274, 435, 438, 441, 444, 447, 620
Ple19I CGATCG 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 1 cut(s) 544
PteI GCGCGC 1 cut(s) 474
PvuI CGATCG 1 cut(s) 576
RruI TCGCGA 1 cut(s) 578
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 609, 662
SatI GCNGC 8 cut(s) 270, 273, 434, 437, 440, 443, 446, 619
Sau3AI GATC 3 cut(s) 367, 573, 649
Sau96I GGNCC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 396
SetI ASST 6 cut(s) 8, 114, 221, 450, 706, 724
SfaNI GCATC 1 cut(s) 202
SinI GGWCC 1 cut(s) 544
Sse9I AATT 5 cut(s) 65, 149, 332, 516, 780
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 2 cut(s) 72, 357
SspMI CTAG 3 cut(s) 216, 350, 614
StuI AGGCCT 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 20, 142, 637
TaqI TCGA 2 cut(s) 147, 154
TaqII GACCGA 2 cut(s) 481, 532
TasI AATT 5 cut(s) 65, 149, 332, 516, 780
TatI WGTACW 1 cut(s) 427
Tru1I TTAA 2 cut(s) 609, 662
Tru9I TTAA 2 cut(s) 609, 662
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 8 cut(s) 269, 272, 433, 436, 439, 442, 445, 618
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 5 cut(s) 47, 122, 473, 721, 741
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 3 cut(s) 65, 149, 332
XspI CTAG 3 cut(s) 216, 350, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.