FvH4_2g28690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001875
Physical Location & Seq
Reverse (-)
22417365 .. 22418059
695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28690.t1

Sequence Viewer

Length: 363 bp
ATGAAGTTTCTCTGCATGGTTTTCTTTTTCAGTCTCATTGTTGGAGGCCATTGTTTAGATTACTGCTCTGTGAACAATATGTCAATTGAACAACCTCAGACGGGAAAGTCGGTCCAAAACAAGCCGGAGTGGAATGTGAAGATCACCAACGGCTGCTCGTGTACTCTACTGAATGTTAAACTAAGCTGCAATGGATTTCGAACAGTCCAAGACATTGATCCTTCCATTTTGAGTGTTTCTGGTGGCGAGTGTTTGGTTAAGAATGGTCAACCTGTTTATGCCAATGCAGATTTCAGCTTCACCTATGCCTGGGACACTCAGTTTCCTTTCAATCCCATCTCCTACCAAATTGCTTGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

5.61

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 25 - 116 6.6e-31 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AclWI GGATC 1 cut(s) 212
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 101, 309
AgsI TTSAA 2 cut(s) 89, 331
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 2 cut(s) 186, 297
AluI AGCT 2 cut(s) 186, 297
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 153, 186
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 136, 292
AsuII TTCGAA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 112
BauI CACGAG 1 cut(s) 157
BbvI GCAGC 2 cut(s) 140, 173
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 38
BisI GCNGC 2 cut(s) 154, 187
BlsI GCNGC 2 cut(s) 155, 188
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 309
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 101, 309
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 110, 332
BseXI GCAGC 2 cut(s) 140, 173
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 101, 309
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 141, 217
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 109, 331
BspPI GGATC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 141, 217
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 3 cut(s) 96, 182, 318
BstKTI GATC 2 cut(s) 144, 220
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 141, 217
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 140, 173
BsuRI GGCC 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 48, 124, 153, 186, 297
CviKI_1 RGCY 5 cut(s) 48, 124, 153, 186, 297
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 96, 182, 318
DpnI GATC 2 cut(s) 143, 219
DpnII GATC 2 cut(s) 141, 217
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 19
FaiI YATR 4 cut(s) 17, 80, 279, 306
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 154, 187
Fsp4HI GCNGC 2 cut(s) 154, 187
GluI GCNGC 2 cut(s) 154, 187
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 125
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 136, 292
Hpy166II GTNNAC 3 cut(s) 73, 162, 269
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 3 cut(s) 73, 162, 269
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 15, 189, 287
HpyF3I CTNAG 3 cut(s) 96, 182, 318
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 141, 217
LpnPI CCDG 5 cut(s) 138, 225, 285, 295, 322
Lsp1109I GCAGC 2 cut(s) 140, 173
MalI GATC 2 cut(s) 143, 219
MboI GATC 2 cut(s) 141, 217
MboII GAAGA 1 cut(s) 151
MfeI CAATTG 1 cut(s) 84
MluCI AATT 2 cut(s) 84, 348
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 2 cut(s) 38, 105
MseI TTAA 3 cut(s) 177, 258, 361
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 310
NdeII GATC 2 cut(s) 141, 217
NlaIII CATG 1 cut(s) 19
NspV TTCGAA 1 cut(s) 199
PkrI GCNGC 2 cut(s) 155, 188
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 177, 258, 361
SatI GCNGC 2 cut(s) 154, 187
Sau3AI GATC 2 cut(s) 141, 217
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 310
SetI ASST 5 cut(s) 97, 188, 274, 299, 305
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 1 cut(s) 112
Sse9I AATT 2 cut(s) 84, 348
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 199
TaqII GACCGA 1 cut(s) 100
TasI AATT 2 cut(s) 84, 348
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 3 cut(s) 177, 258, 361
Tru9I TTAA 3 cut(s) 177, 258, 361
TseI GCWGC 2 cut(s) 153, 186
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.