Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001875

Physical Location & Seq

Genomic Coordinates Forward (+)

2080404 .. 2082759

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACAACGAGGACACATACATACATGTCAAGAAGGTTGTTGGTGGCGCTGATGACCCAACCGTGCACATTAGCAGCGCCACCTCCACCCGCCACTATCTCCCGCCGCCCTGCTATCCTACGCCGCCCACCACCGCCTTCATTCTCCCAACGCTTCATCACAATGACCACCAACAACCAAGACCACCTCGATGACTTGTTCAAGCAAAAACGGATGCTCCGAACTAAGGTCCGGAAGGCCCTCAAGTCAATGGACCCAGTACTCAGATCCCAGGAAGATGATGCGATTCAGAGGATTGTGTTGGAAGCTCCATGGTTTAAGTCTAGTGAGAGATTGTGTGCTTATATAAGCTGTGCTGCTTTGCGTGAAGTTGATACTTCTAAAGTGTTGGGTGAGATTCTAAAGAGTAAAGATGGTGATGTGCAAGTGAGGAAAAAGCTTTATGTGCCGCGTGTGGAGGACAAGAATAGTCACATGAGAATGCTCAACATTTCGAGTGTTGATGATCTGGTTGCGAATTCGATGGATATTTTAGAACCGGCTGCAGTGGATGCTGATGGAAATGAACGCGAAGATGTTTTACAGGCAAGTGATCCAGTTGATTTGTTCCTCTTACCAGGACTAGCATTTGACAGATCTGGGAGACGTTTGGGTCGAGGCGGAGGTTATTATGATACTTTTCTGAGGAACTACCAAGAGCTTGTGAAGGCACGCAATTGGAAGCAACCCCTCCTTGTTGCACTGTCGTATTCTCCACAGATAGTGGATGAAGGAGTTATATCGGTCACCCAACATGATGTTCCAGTTGATGCTCTTGTGTCCTCAGCGGGTGTGATTCCGATCAGCACAGCTGCCATAGACAGGATGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

291

Amino Acids

32.66

Weight (kDa)

9.22

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5-FTHF_cyc-lig	PF01812	70 - 274	5.4e-32	5-formyltetrahydrofolate cyclo-ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32100 AT4G32105 AT4G32110
fragaria_vesca	FvH4_2g27480 FvH4_2g28690 FvH4_2g28701 FvH4_2g28710 FvH4_2g28712 FvH4_5g03660 FvH4_5g25410
malus_domestica	MD08G1079500.v1.1 MD08G1151500.v1.1 MD15G1128800.v1.1
prunus_persica	Prupe.1G484000_v2.0.a1 Prupe.1G484100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286461 RchiOBHm_Chr6g0297461 RchiOBHm_Chr6g0297491
rosa_laevigata	RLG00000004068 RLG00000011592 RLG00000011595 RLG00000011596 RLG00000012570
rosa_multiflora	Rmu_sc0008467.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001490 Rroxscaffold_7G00170440 Rroxscaffold_7G00170460
rosa_rugosa	Rorug06G0055900 Rorug06G0179800 Rorug06G0272400 Rorug06G0272600 Rorug07G0030000
rosa_samantha	Rh6AG383500 Rh6AG383600 Rh6AG383800 Rh6BG391700 Rh6BG392000 Rh6CG296400 Rh6CG397300 Rh6CG397700 Rh6DG288200 Rh6DG384200
rosa_wichuraiana	Rw6G025190 Rw6G033400 Rw6G033410 Rw6G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	651
AccII	CGCG	2 cut(s)	451, 570
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	8 cut(s)	90, 103, 106, 124, 134, 449, 660, 827
AclWI	GGATC	2 cut(s)	261, 587
AcsI	RAATTY	1 cut(s)	517
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	226, 861
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	270, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AluBI	AGCT	5 cut(s)	308, 351, 439, 700, 851
AluI	AGCT	5 cut(s)	308, 351, 439, 700, 851
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	637
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	261, 587
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	74, 356, 542, 851
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	49, 79
AspS9I	GGNCC	3 cut(s)	229, 238, 253
AsuHPI	GGTGA	3 cut(s)	404, 428, 778
AvaII	GGWCC	2 cut(s)	229, 253
BaeGI	GKGCMC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	823
BbvI	GCAGC	4 cut(s)	86, 343, 529, 838
BccI	CCATC	3 cut(s)	407, 517, 551
BciT130I	CCWGG	2 cut(s)	272, 618
BcoDI	GTCTC	1 cut(s)	637
BfaI	CTAG	2 cut(s)	324, 623
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	2 cut(s)	50, 80
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	7 cut(s)	75, 106, 124, 357, 449, 543, 852
BlsI	GCNGC	7 cut(s)	76, 107, 125, 358, 450, 544, 853
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	272, 618
Bme18I	GGWCC	2 cut(s)	229, 253
BmgT120I	GGNCC	3 cut(s)	229, 238, 253
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	272, 618
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	4 cut(s)	204, 271, 541, 799
BmuI	ACTGGG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	270, 311
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 861
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	3 cut(s)	257, 596, 803
Bse8I	GATNNNNATC	1 cut(s)	839
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	272, 618
BseDI	CCNNGG	2 cut(s)	270, 311
BseGI	GGATG	4 cut(s)	219, 556, 772, 870
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	2 cut(s)	226, 861
BseMII	CTCAG	3 cut(s)	277, 674, 837
BseNI	ACTGG	3 cut(s)	257, 596, 803
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	86, 343, 529, 838
Bsh1236I	CGCG	2 cut(s)	451, 570
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	232, 539
BslI	CCNNNNNNNGG	2 cut(s)	226, 861
BsmAI	GTCTC	1 cut(s)	637
BsmBI	CGTCTC	1 cut(s)	637
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	266, 505, 592, 635, 840
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	8 cut(s)	90, 103, 106, 124, 134, 449, 660, 827
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	3 cut(s)	276, 675, 836
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	451, 570
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	261, 587
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	3 cut(s)	257, 596, 803
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	2 cut(s)	270, 311
BssMI	GATC	5 cut(s)	266, 505, 592, 635, 840
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	272, 618
Bst4CI	ACNGT	2 cut(s)	63, 744
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	4 cut(s)	225, 263, 683, 823
BstDSI	CCRYGG	1 cut(s)	311
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	4 cut(s)	219, 556, 772, 870
BstFNI	CGCG	2 cut(s)	451, 570
BstH2I	RGCGCY	2 cut(s)	50, 80
BstHHI	GCGC	2 cut(s)	49, 79
BstKTI	GATC	5 cut(s)	269, 508, 595, 638, 843
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	5 cut(s)	266, 505, 592, 635, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 551
BstNI	CCWGG	2 cut(s)	272, 618
BstNSI	RCATGY	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	270, 616
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	2 cut(s)	451, 570
BstV1I	GCAGC	4 cut(s)	86, 343, 529, 838
BstX2I	RGATCY	2 cut(s)	266, 635
BstYI	RGATCY	2 cut(s)	266, 635
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	4 cut(s)	219, 556, 772, 870
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	552, 740
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	2 cut(s)	49, 79
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	229, 238, 253
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	4 cut(s)	25, 312, 475, 794
CviJI	RGCY	7 cut(s)	239, 308, 351, 439, 542, 700, 851
CviKI_1	RGCY	7 cut(s)	239, 308, 351, 439, 542, 700, 851
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	4 cut(s)	225, 263, 683, 823
DpnI	GATC	5 cut(s)	268, 507, 594, 637, 842
DpnII	GATC	5 cut(s)	266, 505, 592, 635, 840
DrdI	GACNNNNNNGTC	1 cut(s)	651
DseDI	GACNNNNNNGTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	229, 253
Eco91I	GGTNACC	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	270, 616
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	4 cut(s)	28, 315, 478, 797
FatI	CATG	4 cut(s)	24, 311, 474, 793
FauI	CCCGC	3 cut(s)	97, 110, 820
Fnu4HI	GCNGC	7 cut(s)	75, 106, 124, 357, 449, 543, 852
FokI	GGATG	3 cut(s)	226, 563, 779
Fsp4HI	GCNGC	7 cut(s)	75, 106, 124, 357, 449, 543, 852
FspBI	CTAG	2 cut(s)	324, 623
GlaI	GCGC	2 cut(s)	48, 78
GluI	GCNGC	7 cut(s)	75, 106, 124, 357, 449, 543, 852
HaeII	RGCGCY	2 cut(s)	50, 80
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	232, 539
HhaI	GCGC	2 cut(s)	49, 79
Hin1II	CATG	4 cut(s)	28, 315, 478, 797
Hin6I	GCGC	2 cut(s)	47, 77
HinP1I	GCGC	2 cut(s)	47, 77
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	286, 397, 835
HpaII	CCGG	2 cut(s)	232, 539
HphI	GGTGA	3 cut(s)	404, 428, 778
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	5 cut(s)	221, 266, 291, 684, 840
Hpy188III	TCNNGA	2 cut(s)	30, 232
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	5 cut(s)	27, 147, 229, 700, 764
HpyCH4III	ACNGT	2 cut(s)	63, 744
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	4 cut(s)	66, 424, 545, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 551
HpyF3I	CTNAG	4 cut(s)	225, 263, 683, 823
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	4 cut(s)	28, 315, 478, 797
HspAI	GCGC	2 cut(s)	47, 77
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	266, 505, 592, 635, 840
LmnI	GCTCC	2 cut(s)	222, 313
Lsp1109I	GCAGC	4 cut(s)	86, 343, 529, 838
LweI	GCATC	4 cut(s)	204, 271, 541, 799
MaeI	CTAG	2 cut(s)	324, 623
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	2 cut(s)	470, 784
MalI	GATC	5 cut(s)	268, 507, 594, 637, 842
MboI	GATC	5 cut(s)	266, 505, 592, 635, 840
MboII	GAAGA	2 cut(s)	287, 584
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	2 cut(s)	266, 635
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	517, 715
MmeI	TCCRAC	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	231
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	3 cut(s)	161, 189, 479
MspA1I	CMGCKG	2 cut(s)	827, 851
MspI	CCGG	2 cut(s)	232, 539
MspR9I	CCNGG	2 cut(s)	272, 618
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	272, 618
MvnI	CGCG	2 cut(s)	451, 570
MwoI	GCNNNNNNNGC	2 cut(s)	445, 551
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	5 cut(s)	266, 505, 592, 635, 840
NlaIII	CATG	4 cut(s)	28, 315, 478, 797
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	470, 784
NspI	RCATGY	1 cut(s)	28
PciI	ACATGT	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	2 cut(s)	217, 652
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	286, 397, 835
PkrI	GCNGC	7 cut(s)	76, 107, 125, 358, 450, 544, 853
PscI	ACATGT	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	270, 616
PspEI	GGTNACC	1 cut(s)	784
PspGI	CCWGG	2 cut(s)	270, 616
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	3 cut(s)	229, 238, 253
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	266, 635
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	3 cut(s)	161, 189, 479
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	7 cut(s)	75, 106, 124, 357, 449, 543, 852
Sau3AI	GATC	5 cut(s)	266, 505, 592, 635, 840
Sau96I	GGNCC	3 cut(s)	229, 238, 253
ScaI	AGTACT	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	272, 618
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	4 cut(s)	204, 271, 541, 799
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	2 cut(s)	229, 253
SmiMI	CAYNNNNRTG	3 cut(s)	161, 189, 479
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	517, 715
SsiI	CCGC	8 cut(s)	90, 103, 106, 124, 134, 449, 660, 827
SspMI	CTAG	2 cut(s)	324, 623
StyD4I	CCNGG	2 cut(s)	270, 616
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	63, 744
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	4 cut(s)	189, 494, 521, 655
TaqII	GACCGA	1 cut(s)	772
TasI	AATT	2 cut(s)	517, 715
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	3 cut(s)	108, 126, 451
TfiI	GAWTC	3 cut(s)	286, 397, 835
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	552, 747
TseFI	GTSAC	2 cut(s)	470, 784
TseI	GCWGC	4 cut(s)	74, 356, 542, 851
Tsp45I	GTSAC	2 cut(s)	470, 784
TspDTI	ATGAA	4 cut(s)	129, 145, 579, 783
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	552, 747
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	229, 253
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	2 cut(s)	324, 623
ZrmI	AGTACT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.