Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008467.1

Orthogroup ID

OG0001875

Physical Location & Seq

Genomic Coordinates Forward (+)

59773 .. 62391

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008467.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcagcagcagcagctatacatcatgaagcggtttctctgtgcagttttcctcttcggtctcaatgttggaggccagtgctttggttgctctgtgaaggatatctcaattgaacaatctcatacgggaaagtcggtccaaaacaagccagaatggaatgtgacgatcgcgaatggttgctcgtgttctcaactgaatgttaaactaggctgcgatggatttcaaactgttgaagacattgatccttccattttaagtgtatctggtggtgagtgtctggtcaagaatggtcaacctgtctatgccaatggaggccagtgctttggttgctctgtgaaggatatctcaattgaacaatctcggacgggaaagtcggtccaaaacaagccagaatggaatgtgacgatcgtgaatggttgctcgtgttctcaactgaatgttaaactaggctgcgatggatttcaaactgttgaagacattgatccttccattttaagtgtatctggtggtgagtgtctggtcaagaatggtcaacctgtctatgccaatggaggtttcaacttcatctatgcttgggacacttcattttctttcaatccaatctcctcccaaattgcttgctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.33

Weight (kDa)

4.93

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32100 AT4G32105 AT4G32110
fragaria_vesca	FvH4_2g27480 FvH4_2g28690 FvH4_2g28701 FvH4_2g28710 FvH4_2g28712 FvH4_5g03660 FvH4_5g25410
malus_domestica	MD08G1079500.v1.1 MD08G1151500.v1.1 MD15G1128800.v1.1
prunus_persica	Prupe.1G484000_v2.0.a1 Prupe.1G484100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0286461 RchiOBHm_Chr6g0297461 RchiOBHm_Chr6g0297491
rosa_laevigata	RLG00000004068 RLG00000011592 RLG00000011595 RLG00000011596 RLG00000012570
rosa_multiflora	Rmu_sc0008467.1_g000015
rosa_roxburghii	Rroxscaffold_1G00001490 Rroxscaffold_7G00170440 Rroxscaffold_7G00170460
rosa_rugosa	Rorug06G0055900 Rorug06G0179800 Rorug06G0272400 Rorug06G0272600 Rorug07G0030000
rosa_samantha	Rh6AG383500 Rh6AG383600 Rh6AG383800 Rh6BG391700 Rh6BG392000 Rh6CG296400 Rh6CG397300 Rh6CG397700 Rh6DG288200 Rh6DG384200
rosa_wichuraiana	Rw6G025190 Rw6G033400 Rw6G033410 Rw6G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	236, 476
AgsI	TTSAA	8 cut(s)	113, 224, 233, 353, 464, 473, 559, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	236, 476
AoxI	GGCC	2 cut(s)	73, 313
ApeKI	GCWGC	6 cut(s)	4, 7, 10, 13, 210, 450
AspS9I	GGNCC	2 cut(s)	136, 376
AsuHPI	GGTGA	2 cut(s)	281, 521
AvaII	GGWCC	2 cut(s)	136, 376
BauI	CACGAG	2 cut(s)	181, 421
BbsI	GAAGAC	2 cut(s)	240, 480
BbvI	GCAGC	6 cut(s)	16, 19, 22, 25, 197, 437
BccI	CCATC	2 cut(s)	209, 449
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	206, 446
BisI	GCNGC	6 cut(s)	5, 8, 11, 14, 211, 451
BlsI	GCNGC	6 cut(s)	6, 9, 12, 15, 212, 452
Bme18I	GGWCC	2 cut(s)	136, 376
BmgT120I	GGNCC	2 cut(s)	136, 376
BpiI	GAAGAC	2 cut(s)	240, 480
BsaI	GGTCTC	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	76, 316
BseNI	ACTGG	2 cut(s)	76, 316
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	6 cut(s)	16, 19, 22, 25, 197, 437
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	2 cut(s)	168, 408
BshFI	GGCC	2 cut(s)	75, 315
BsiEI	CGRYCG	2 cut(s)	168, 408
BslFI	GGGAC	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	75, 315
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	165, 241, 405, 481
Bsp68I	TCGCGA	1 cut(s)	170
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	75, 315
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	24
BspPI	GGATC	2 cut(s)	236, 476
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	76, 316
BssMI	GATC	4 cut(s)	165, 241, 405, 481
BssSI	CACGAG	2 cut(s)	181, 421
Bst2BI	CACGAG	2 cut(s)	181, 421
Bst4CI	ACNGT	2 cut(s)	229, 469
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	4 cut(s)	168, 244, 408, 484
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	165, 241, 405, 481
BstMCI	CGRYCG	2 cut(s)	168, 408
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 13, 87, 327
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	6 cut(s)	16, 19, 22, 25, 197, 437
BstV2I	GAAGAC	2 cut(s)	240, 480
BstXI	CCANNNNNNTGG	2 cut(s)	83, 323
BsuRI	GGCC	2 cut(s)	75, 315
BtgZI	GCGATG	2 cut(s)	228, 468
BtsIMutI	CAGTG	2 cut(s)	83, 323
BtuMI	TCGCGA	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	619
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	136, 376
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	16, 75, 148, 210, 315, 388, 450
CviKI_1	RGCY	7 cut(s)	16, 75, 148, 210, 315, 388, 450
DpnI	GATC	4 cut(s)	167, 243, 407, 483
DpnII	GATC	4 cut(s)	165, 241, 405, 481
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	65
Eco32I	GATATC	2 cut(s)	103, 343
Eco47I	GGWCC	2 cut(s)	136, 376
EcoRV	GATATC	2 cut(s)	103, 343
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	19, 26, 123, 303, 543, 570
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	6 cut(s)	5, 8, 11, 14, 211, 451
Fsp4HI	GCNGC	6 cut(s)	5, 8, 11, 14, 211, 451
FspBI	CTAG	2 cut(s)	206, 446
GluI	GCNGC	6 cut(s)	5, 8, 11, 14, 211, 451
HaeIII	GGCC	2 cut(s)	75, 315
Hin1II	CATG	1 cut(s)	28
HincII	GTYRAC	2 cut(s)	293, 533
HindII	GTYRAC	2 cut(s)	293, 533
HphI	GGTGA	2 cut(s)	281, 521
Hpy166II	GTNNAC	2 cut(s)	293, 533
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	5 cut(s)	25, 169, 283, 409, 523
Hpy8I	GTNNAC	2 cut(s)	293, 533
HpyAV	CCTTC	4 cut(s)	91, 255, 331, 495
HpyCH4III	ACNGT	2 cut(s)	229, 469
HpyCH4V	TGCA	2 cut(s)	4, 44
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 13, 87, 327
Hsp92II	CATG	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	165, 241, 405, 481
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	6 cut(s)	16, 19, 22, 25, 197, 437
MaeI	CTAG	2 cut(s)	206, 446
MaeIII	GTNAC	2 cut(s)	160, 400
MalI	GATC	4 cut(s)	167, 243, 407, 483
MboI	GATC	4 cut(s)	165, 241, 405, 481
MboII	GAAGA	3 cut(s)	46, 245, 485
MfeI	CAATTG	2 cut(s)	108, 348
MluCI	AATT	3 cut(s)	108, 348, 612
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	62, 65, 305, 545, 616
MseI	TTAA	4 cut(s)	201, 254, 441, 494
MunI	CAATTG	2 cut(s)	108, 348
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	10, 13, 87, 327
NdeII	GATC	4 cut(s)	165, 241, 405, 481
NlaIII	CATG	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	160, 400
NruI	TCGCGA	1 cut(s)	170
PagI	TCATGA	1 cut(s)	24
PkrI	GCNGC	6 cut(s)	6, 9, 12, 15, 212, 452
Ple19I	CGATCG	2 cut(s)	168, 408
PspPI	GGNCC	2 cut(s)	136, 376
PvuI	CGATCG	2 cut(s)	168, 408
RruI	TCGCGA	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	201, 254, 441, 494
SatI	GCNGC	6 cut(s)	5, 8, 11, 14, 211, 451
Sau3AI	GATC	4 cut(s)	165, 241, 405, 481
Sau96I	GGNCC	2 cut(s)	136, 376
SetI	ASST	4 cut(s)	18, 298, 538, 556
SinI	GGWCC	2 cut(s)	136, 376
Sse9I	AATT	3 cut(s)	108, 348, 612
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	206, 446
TaaI	ACNGT	2 cut(s)	229, 469
TaqII	GACCGA	3 cut(s)	47, 124, 364
TasI	AATT	3 cut(s)	108, 348, 612
Tru1I	TTAA	4 cut(s)	201, 254, 441, 494
Tru9I	TTAA	4 cut(s)	201, 254, 441, 494
TscAI	CASTG	2 cut(s)	83, 323
TseFI	GTSAC	2 cut(s)	160, 400
TseI	GCWGC	6 cut(s)	4, 7, 10, 13, 210, 450
Tsp45I	GTSAC	2 cut(s)	160, 400
TspDTI	ATGAA	3 cut(s)	41, 553, 573
TspRI	CASTG	2 cut(s)	83, 323
VpaK11BI	GGWCC	2 cut(s)	136, 376
XspI	CTAG	2 cut(s)	206, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.