FvH4_2g28712

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001875
Physical Location & Seq
Forward (+)
22440024 .. 22440580
557 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28712.t1

Sequence Viewer

Length: 378 bp
ATGGAGAGTGAAGAAGAAGAAGACCAGTGCTGCGTTCAAACATGCATTGCTCTCCATACTGCAGGAAATTGCCAATGCTCTCCTAACAGTGTCAAAATCATACAGTCTCGAACGGAGAAGACATACAAGGATAAACAAGTGTGGAGCGTGAGCATCATCAATACCTGCCCTTGTTCTCAACTGGATGTTAAACTCAGTTGCTATGAATTTCATACTGTGCAACCGATTGATCCTAAGGTCTTAACCCGAGTTGAAGGCGTCGTTTGTCTCATCAACAATGGCGAGGCTCTCCGGCCACAGCAGCAGTTCAGTTTTACCTATGCTTACGACTCTCAGTTTCCTTTCATGTTCCTCTCCTCCCGAATAGTTTGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.2

Weight (kDa)

5.06

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 29 - 120 1.7e-28 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 258
AgsI TTSAA 2 cut(s) 38, 254
Alw26I GTCTC 2 cut(s) 111, 272
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 30, 301
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 234
BbsI GAAGAC 2 cut(s) 27, 125
BbvI GCAGC 2 cut(s) 17, 313
BcoDI GTCTC 2 cut(s) 111, 272
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 2 cut(s) 31, 302
BlsI GCNGC 2 cut(s) 32, 303
BmeT110I CYCGRG 1 cut(s) 246
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 2 cut(s) 27, 125
BsaHI GRCGYC 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 25, 186
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 45
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 208, 347
BseNI ACTGG 2 cut(s) 25, 186
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 2 cut(s) 17, 313
BshFI GGCC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 111, 272
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 246
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 207, 346
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 2 cut(s) 25, 186
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 89, 105, 217
BstACI GRCGYC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 194, 234, 333
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 111, 272
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 17, 313
BstV2I GAAGAC 2 cut(s) 27, 125
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 32, 94
BveI ACCTGC 1 cut(s) 173
CseI GACGC 1 cut(s) 247
CviAII CATG 2 cut(s) 42, 346
CviJI RGCY 2 cut(s) 287, 295
CviKI_1 RGCY 2 cut(s) 287, 295
DdeI CTNAG 3 cut(s) 194, 234, 333
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 47
FaeI CATG 2 cut(s) 45, 349
FaiI YATR 8 cut(s) 43, 57, 101, 124, 204, 213, 321, 347
FatI CATG 2 cut(s) 41, 345
Fnu4HI GCNGC 2 cut(s) 31, 302
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 31, 302
GluI GCNGC 2 cut(s) 31, 302
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 45, 349
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 108, 360
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 3 cut(s) 89, 105, 217
HpyCH4V TGCA 3 cut(s) 45, 62, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 3 cut(s) 194, 234, 333
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 45, 349
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 38, 48, 167, 178, 305
Lsp1109I GCAGC 2 cut(s) 17, 313
LweI GCATC 1 cut(s) 162
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 5 cut(s) 23, 26, 29, 32, 130
MluCI AATT 2 cut(s) 67, 206
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 3 cut(s) 277, 362, 367
Mph1103I ATGCAT 1 cut(s) 47
MseI TTAA 2 cut(s) 189, 242
MspI CCGG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 45, 349
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 1 cut(s) 45
PkrI GCNGC 2 cut(s) 32, 303
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 64
SaqAI TTAA 2 cut(s) 189, 242
SatI GCNGC 2 cut(s) 31, 302
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 323
SetI ASST 3 cut(s) 167, 240, 320
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 67, 206
TaaI ACNGT 3 cut(s) 89, 105, 217
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 67, 206
Tru1I TTAA 2 cut(s) 189, 242
Tru9I TTAA 2 cut(s) 189, 242
TscAI CASTG 2 cut(s) 32, 94
TseI GCWGC 2 cut(s) 30, 301
TspDTI ATGAA 3 cut(s) 200, 219, 334
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 32, 94
XapI RAATTY 1 cut(s) 206
XceI RCATGY 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.