RLG00000012570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001875
Physical Location & Seq
Reverse (-)
19954216 .. 19956445
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012570

Sequence Viewer

Length: 489 bp
ATGGTGTGGAGTTCCAGAGGTTCGAAGAATAGGAGTGCGCTAGAGGACTATGATTTACTGGAAGTGTCGACTGCCGGAACCTTGGCGGCGGCGGTGATAGACTGGCAGAAGGTGCATGTTGCATTTGCTCTTGTCAGCTTTGCTTGGGTTTGGGCCTTGGGCATAGGCCTAGGAGTGGACTGTCACTGCTCTAAGAACAGGCTCAAAGTCACACAGTATCGAACAGGAGAGTTGTTGCGAAACAAGCCAGTGTGGAGGGTGAAGATCACCAATGACTGCCCCTGTACTCAACTTGATGTTAAACTAAGTTGCAAGGGATTTCAAGCTGTGCAAGATATTGGTCCTAAGCCAGTCTTGGCCAAATCCGGTGGCGAGTGTCTCCTCAACGATGGCCAACCTATCTGTGCGCACAAGAATTTCATTTTCACCTATGCTTTTGGCACTCGGTTTCCTTTTCACCTGCTCTCCTCCCGAATTGCTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.89

Weight (kDa)

9.1

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 65 - 157 4.1e-25 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 468
Acc16I TGCGCA 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 468
AccI GTMKAC 1 cut(s) 68
AciI CCGC 3 cut(s) 86, 89, 92
AcoI YGGCCR 2 cut(s) 357, 391
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 2 cut(s) 138, 326
AluI AGCT 2 cut(s) 138, 326
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 4 cut(s) 153, 166, 357, 391
ApoI RAATTY 1 cut(s) 415
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 2 cut(s) 40, 409
AspS9I GGNCC 2 cut(s) 153, 341
AsuHPI GGTGA 5 cut(s) 106, 259, 271, 418, 449
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 341
AvrII CCTAGG 1 cut(s) 169
BalI TGGCCA 2 cut(s) 359, 393
BccI CCATC 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 41, 170
BfuAI ACCTGC 1 cut(s) 468
BisI GCNGC 2 cut(s) 87, 90
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 2 cut(s) 88, 91
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 153, 341
BmiI GGNNCC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 81, 156, 169
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 4 cut(s) 63, 107, 248, 350
BseDI CCNNGG 3 cut(s) 81, 156, 169
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 4 cut(s) 63, 107, 248, 350
BseRI GAGGAG 2 cut(s) 371, 457
BshFI GGCC 4 cut(s) 155, 168, 359, 393
BsiSI CCGG 2 cut(s) 75, 366
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 4 cut(s) 155, 168, 359, 393
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 3 cut(s) 86, 89, 92
BspANI GGCC 4 cut(s) 155, 168, 359, 393
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 23
BsrI ACTGG 4 cut(s) 63, 107, 248, 350
BssECI CCNNGG 3 cut(s) 81, 156, 169
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 3 cut(s) 81, 156, 169
Bst4CI ACNGT 2 cut(s) 182, 216
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 192, 305, 345
BstHHI GCGC 2 cut(s) 40, 409
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 112, 244
BstNSI RCATGY 1 cut(s) 119
BsuRI GGCC 4 cut(s) 155, 168, 359, 393
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 2 cut(s) 184, 255
BveI ACCTGC 1 cut(s) 468
CfoI GCGC 2 cut(s) 40, 409
Cfr13I GGNCC 2 cut(s) 153, 341
Csp6I GTAC 1 cut(s) 285
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 1 cut(s) 116
CviJI RGCY 9 cut(s) 138, 155, 168, 202, 247, 326, 349, 359, 393
CviKI_1 RGCY 9 cut(s) 138, 155, 168, 202, 247, 326, 349, 359, 393
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 192, 305, 345
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 357, 391
Eco130I CCWWGG 3 cut(s) 81, 156, 169
Eco147I AGGCCT 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 81, 156, 169
ErhI CCWWGG 3 cut(s) 81, 156, 169
FaeI CATG 1 cut(s) 119
FaiI YATR 4 cut(s) 51, 117, 164, 432
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 87, 90
Fsp4HI GCNGC 2 cut(s) 87, 90
FspAI RTGCGCAY 1 cut(s) 408
FspBI CTAG 2 cut(s) 41, 170
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 2 cut(s) 39, 408
GluI GCNGC 2 cut(s) 87, 90
HaeIII GGCC 4 cut(s) 155, 168, 359, 393
HapII CCGG 2 cut(s) 75, 366
HhaI GCGC 2 cut(s) 40, 409
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 2 cut(s) 38, 407
HinP1I GCGC 2 cut(s) 38, 407
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HpaII CCGG 2 cut(s) 75, 366
HphI GGTGA 5 cut(s) 106, 259, 271, 418, 449
Hpy166II GTNNAC 2 cut(s) 69, 178
Hpy188III TCNNGA 2 cut(s) 15, 471
Hpy8I GTNNAC 2 cut(s) 69, 178
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 182, 216
HpyCH4V TGCA 4 cut(s) 115, 122, 312, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 244
HpyF3I CTNAG 3 cut(s) 192, 305, 345
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 2 cut(s) 38, 407
Kzo9I GATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 41, 170
MaeIII GTNAC 2 cut(s) 182, 208
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 37, 274
MlsI TGGCCA 2 cut(s) 359, 393
MluCI AATT 2 cut(s) 415, 474
MluNI TGGCCA 2 cut(s) 359, 393
MnlI CCTC 5 cut(s) 11, 37, 249, 392, 478
Mox20I TGGCCA 2 cut(s) 359, 393
MscI TGGCCA 2 cut(s) 359, 393
MseI TTAA 2 cut(s) 300, 487
Msp20I TGGCCA 2 cut(s) 359, 393
MspI CCGG 2 cut(s) 75, 366
MwoI GCNNNNNNNGC 2 cut(s) 112, 244
NdeII GATC 1 cut(s) 264
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 182, 208
NsbI TGCGCA 1 cut(s) 408
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 468
PceI AGGCCT 1 cut(s) 168
PkrI GCNGC 2 cut(s) 88, 91
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 153, 341
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 300, 487
SatI GCNGC 2 cut(s) 87, 90
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 153, 341
SetI ASST 8 cut(s) 22, 83, 114, 140, 328, 400, 431, 462
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 341
Sse9I AATT 2 cut(s) 415, 474
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 3 cut(s) 86, 89, 92
SspMI CTAG 2 cut(s) 41, 170
StuI AGGCCT 1 cut(s) 168
StyI CCWWGG 3 cut(s) 81, 156, 169
TaaI ACNGT 2 cut(s) 182, 216
TaqI TCGA 3 cut(s) 23, 68, 220
TasI AATT 2 cut(s) 415, 474
TatI WGTACW 1 cut(s) 284
TauI GCSGC 2 cut(s) 89, 92
Tru1I TTAA 2 cut(s) 300, 487
Tru9I TTAA 2 cut(s) 300, 487
TscAI CASTG 2 cut(s) 191, 255
TseFI GTSAC 2 cut(s) 182, 208
Tsp45I GTSAC 2 cut(s) 182, 208
TspDTI ATGAA 1 cut(s) 409
TspRI CASTG 2 cut(s) 191, 255
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 2 cut(s) 41, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.