AT5G22860

serine carboxypeptidase S28 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
7639076 .. 7643170
4095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22860.2

Sequence Viewer

Length: 1509 bp
ATGTCTCTTCCATATACAATTCTCATTCTATTTATATTTTCAACATCTTCATCTTATTTGATCCCCCTCGCACACTCCAAAATCGCTAGACTTGGGATTTCCTCAAAAACGCTAAAGAATGAACCTGATGGATCAACGCAAAAAGTAGATGAATCTAATCTTAAAATGTACTACTTTAATCAGACACTCGATCACTTCACATTCACACCGGAAAGCTACATGACTTTTCAACAAAGATACGCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAACGCGCCAATCTTAGCATTTCTTGGAGAAGAATCGTCGTTAGACTCTGATTTGGCTGCCATCGGTTTTCTTCGTGACAACGGTCCTCGCCTAAATGCGCTCCTCGTCTACATAGAGCATAGGTATTATGGGGAGACGATGCCATTTGGATCAGCAGAAGAAGCACTAAAGAACGCAAGTACGTTGGGGTATTTGAACGCAGCACAAGCCCTAGCAGACTATGCCGCGATTCTCTTGCACGTTAAGGAGAAGTACTCCACCAATCACAGCCCTATCATTGTAATTGGAGGATCCTATGGTGGAATGTTAGCGGCATGGTTCAGGCTAAAATATCCACACATAGCACTCGGAGCATTAGCATCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTATTATTATATTGTAACCAAAGTTTTCAAGGAAGCAAGTGAAAGATGTTATAATACAATCCGTAATTCTTGGATAGAAATCGATAGAGTTGCTGGCAAACCCAATGGTCTCTCGATCCTTAGCAAACAATTCAAAACTTGCGCTCCATTGAACGGAAGCTTCGATATCAAAGACTTTTTGGACACAATATATGCCGAAGCTGTTCAATACAACCGAGGTCCGAATTTTTGGGTGGCCAAAGTGTGCAACGCAATCAACGCCAATCCACCAAACCGTAGATACAATTTACTCGACCGGATTTTTGCTGGTGTTGTCGCTTTAGTAGGCAACCGAACTTGCTATGATACAAAAATGTTTGCGCAGCCAACAAACAATAACATCGCATGGAGATGGCAGAGCTGCAGCGAGATAGTGATGCCCGTGGGATATGACAAACAAGATACAATGTTCCCAACGGCACCATTTAACATGACCAGTTACATTGATGGATGTAAGTCTTATCATGGTGTCACTCCTAGACCACATTGGATCACAACTTATTTCGGCATTCAGGAGGTCAAGTTAATCCTCCAAAAATTTGGAAGCAACATCATTTTCTCTAATGGATTGTCTGATCCTTATAGCGTTGGCGGAGTTTTGGAGGATATTTCAGATACTTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTCTAGATATCACCTTGAAGAGCAAAGAAGATCCGGAGTGGCTAGTGATTCAAAGAGAGAAAGAGATTAAAGTTATTGATTCTTGGATTTCAACTTATCAAAATGATCTAAGAGATCTTAACATGCCAGTCTAG

Protein Analysis

502

Amino Acids

56.45

Weight (kDa)

6.8

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 61 - 439 8.2e-63 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
Acc16I TGCGCA 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 384
AccII CGCG 2 cut(s) 281, 503
AccIII TCCGGA 1 cut(s) 1408
AciI CCGC 3 cut(s) 501, 587, 1314
AclWI GGATC 9 cut(s) 55, 139, 433, 561, 574, 793, 1220, 1292, 1400
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 3 cut(s) 677, 907, 1259
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 3 cut(s) 170, 457, 530
AfiI CCNNNNNNNGG 3 cut(s) 258, 680, 836
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 5 cut(s) 216, 644, 843, 884, 1083
AluI AGCT 5 cut(s) 216, 644, 843, 884, 1083
Alw26I GTCTC 3 cut(s) 9, 404, 797
AlwI GGATC 9 cut(s) 55, 139, 433, 561, 574, 793, 1220, 1292, 1400
Aor13HI TCCGGA 1 cut(s) 1408
AoxI GGCC 1 cut(s) 918
ApeKI GCWGC 5 cut(s) 332, 476, 1045, 1083, 1086
ApoI RAATTY 3 cut(s) 677, 907, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
Asp700I GAANNNNTTC 1 cut(s) 885
AspLEI GCGC 4 cut(s) 283, 376, 827, 1045
AspS9I GGNCC 2 cut(s) 359, 902
AsuHPI GGTGA 1 cut(s) 1378
AvaII GGWCC 2 cut(s) 359, 902
BaeI ACNNNNGTAYC 2 cut(s) 1329, 1362
BalI TGGCCA 1 cut(s) 920
BamHI GGATCC 1 cut(s) 566
BanI GGYRCC 1 cut(s) 1141
BbvI GCAGC 5 cut(s) 319, 488, 1057, 1070, 1098
BccI CCATC 4 cut(s) 122, 344, 1068, 1163
BceAI ACGGC 1 cut(s) 1155
BcgI CGANNNNNNTGC 4 cut(s) 493, 527, 755, 789
BcoDI GTCTC 3 cut(s) 9, 404, 797
BfaI CTAG 6 cut(s) 87, 488, 1200, 1379, 1418, 1507
BfmI CTRYAG 1 cut(s) 1084
BglII AGATCT 1 cut(s) 1489
BisI GCNGC 7 cut(s) 333, 477, 501, 588, 1046, 1084, 1087
BlsI GCNGC 7 cut(s) 334, 478, 502, 589, 1047, 1085, 1088
BmcAI AGTACT 1 cut(s) 530
Bme18I GGWCC 2 cut(s) 359, 902
BmgT120I GGNCC 2 cut(s) 359, 902
BmiI GGNNCC 2 cut(s) 568, 1143
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 3 cut(s) 405, 644, 1089
BmuI ACTGGG 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu10I CCTNAGC 1 cut(s) 803
Bsa29I ATCGAT 1 cut(s) 765
BsaBI GATNNNNATC 1 cut(s) 761
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 2 cut(s) 898, 1104
BsaWI WCCGGW 3 cut(s) 208, 978, 1408
BsaXI ACNNNNNCTCC 4 cut(s) 811, 841, 1229, 1259
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 680, 836
Bse1I ACTGG 3 cut(s) 263, 1158, 1502
Bse8I GATNNNNATC 1 cut(s) 761
BseAI TCCGGA 1 cut(s) 1408
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 2 cut(s) 898, 1104
BseGI GGATG 1 cut(s) 1178
BseJI GATNNNNATC 1 cut(s) 761
BseLI CCNNNNNNNGG 3 cut(s) 258, 680, 836
BseNI ACTGG 3 cut(s) 263, 1158, 1502
BseRI GAGGAG 2 cut(s) 368, 636
BseXI GCAGC 5 cut(s) 319, 488, 1057, 1070, 1098
Bsh1236I CGCG 2 cut(s) 281, 503
Bsh1285I CGRYCG 1 cut(s) 979
BshFI GGCC 1 cut(s) 920
BshNI GGYRCC 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 765
BsiEI CGRYCG 1 cut(s) 979
BsiSI CCGG 3 cut(s) 209, 979, 1409
BslI CCNNNNNNNGG 3 cut(s) 258, 680, 836
BsmAI GTCTC 3 cut(s) 9, 404, 797
BsmBI CGTCTC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 1 cut(s) 920
Bso31I GGTCTC 1 cut(s) 797
Bsp13I TCCGGA 1 cut(s) 1408
BspACI CCGC 3 cut(s) 501, 587, 1314
BspANI GGCC 1 cut(s) 920
BspDI ATCGAT 1 cut(s) 765
BspEI TCCGGA 1 cut(s) 1408
BspFNI CGCG 2 cut(s) 281, 503
BspLI GGNNCC 2 cut(s) 568, 1143
BspMAI CTGCAG 1 cut(s) 1088
BspPI GGATC 9 cut(s) 55, 139, 433, 561, 574, 793, 1220, 1292, 1400
BspQI GCTCTTC 1 cut(s) 1388
BspT107I GGYRCC 1 cut(s) 1141
BspTNI GGTCTC 1 cut(s) 797
BsrI ACTGG 3 cut(s) 263, 1158, 1502
BssECI CCNNGG 2 cut(s) 898, 1104
Bst4CI ACNGT 2 cut(s) 359, 959
Bst6I CTCTTC 3 cut(s) 12, 654, 1388
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 778
BstDEI CTNAG 3 cut(s) 289, 803, 1484
BstDSI CCRYGG 1 cut(s) 1104
BstF5I GGATG 1 cut(s) 1178
BstFNI CGCG 2 cut(s) 281, 503
BstHHI GCGC 4 cut(s) 283, 376, 827, 1045
BstMAI GTCTC 3 cut(s) 9, 404, 797
BstMCI CGRYCG 1 cut(s) 979
BstMWI GCNNNNNNNGC 6 cut(s) 437, 482, 497, 626, 641, 941
BstNSI RCATGY 1 cut(s) 1501
BstPAI GACNNNNGTC 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 1084
BstUI CGCG 2 cut(s) 281, 503
BstV1I GCAGC 5 cut(s) 319, 488, 1057, 1070, 1098
BstX2I RGATCY 3 cut(s) 566, 1405, 1489
BstXI CCANNNNNNTGG 1 cut(s) 1262
BstYI RGATCY 3 cut(s) 566, 1405, 1489
Bsu15I ATCGAT 1 cut(s) 765
BsuRI GGCC 1 cut(s) 920
BsuTUI ATCGAT 1 cut(s) 765
BtgI CCRYGG 1 cut(s) 1104
BtgZI GCGATG 1 cut(s) 1048
BtsCI GGATG 1 cut(s) 1178
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 778
CfoI GCGC 4 cut(s) 283, 376, 827, 1045
Cfr13I GGNCC 2 cut(s) 359, 902
ClaI ATCGAT 1 cut(s) 765
Csp6I GTAC 3 cut(s) 169, 456, 529
CviAII CATG 6 cut(s) 220, 591, 1068, 1153, 1187, 1498
CviQI GTAC 3 cut(s) 169, 456, 529
DdeI CTNAG 3 cut(s) 289, 803, 1484
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 3 cut(s) 12, 654, 1388
EarI CTCTTC 3 cut(s) 12, 654, 1388
EciI GGCGGA 1 cut(s) 1329
Eco31I GGTCTC 1 cut(s) 797
Eco32I GATATC 2 cut(s) 850, 1384
Eco47I GGWCC 2 cut(s) 359, 902
Eco57I CTGAAG 1 cut(s) 624
EcoRV GATATC 2 cut(s) 850, 1384
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 6 cut(s) 223, 594, 1071, 1156, 1190, 1501
FatI CATG 6 cut(s) 219, 590, 1067, 1152, 1186, 1497
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 7 cut(s) 333, 477, 501, 588, 1046, 1084, 1087
FokI GGATG 1 cut(s) 1185
Fsp4HI GCNGC 7 cut(s) 333, 477, 501, 588, 1046, 1084, 1087
FspBI CTAG 6 cut(s) 87, 488, 1200, 1379, 1418, 1507
FspI TGCGCA 1 cut(s) 1044
GlaI GCGC 4 cut(s) 282, 375, 826, 1044
GluI GCNGC 7 cut(s) 333, 477, 501, 588, 1046, 1084, 1087
HaeIII GGCC 1 cut(s) 920
HapII CCGG 3 cut(s) 209, 979, 1409
HhaI GCGC 4 cut(s) 283, 376, 827, 1045
Hin1II CATG 6 cut(s) 223, 594, 1071, 1156, 1190, 1501
Hin6I GCGC 4 cut(s) 281, 374, 825, 1043
HinP1I GCGC 4 cut(s) 281, 374, 825, 1043
HindIII AAGCTT 1 cut(s) 841
HinfI GANTC 7 cut(s) 152, 248, 308, 320, 505, 1423, 1454
HpaII CCGG 3 cut(s) 209, 979, 1409
HphI GGTGA 1 cut(s) 1378
Hpy166II GTNNAC 2 cut(s) 385, 1370
Hpy188I TCNGA 6 cut(s) 183, 325, 626, 906, 1297, 1336
Hpy188III TCNNGA 5 cut(s) 350, 796, 1235, 1379, 1409
Hpy8I GTNNAC 2 cut(s) 385, 1370
Hpy99I CGWCG 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 359, 959
HpyCH4IV ACGT 2 cut(s) 458, 516
HpyCH4V TGCA 3 cut(s) 514, 930, 1086
HpyF10VI GCNNNNNNNGC 6 cut(s) 437, 482, 497, 626, 641, 941
HpyF3I CTNAG 3 cut(s) 289, 803, 1484
HpySE526I ACGT 2 cut(s) 458, 516
Hsp92II CATG 6 cut(s) 223, 594, 1071, 1156, 1190, 1501
HspAI GCGC 4 cut(s) 281, 374, 825, 1043
Kpn2I TCCGGA 1 cut(s) 1408
LguI GCTCTTC 1 cut(s) 1388
LmnI GCTCC 4 cut(s) 381, 626, 649, 832
Lsp1109I GCAGC 5 cut(s) 319, 488, 1057, 1070, 1098
LweI GCATC 3 cut(s) 405, 644, 1089
MaeI CTAG 6 cut(s) 87, 488, 1200, 1379, 1418, 1507
MaeII ACGT 2 cut(s) 458, 516
MaeIII GTNAC 4 cut(s) 350, 697, 1160, 1192
MboII GAAGA 9 cut(s) 39, 317, 338, 446, 630, 641, 674, 1405, 1415
MflI RGATCY 3 cut(s) 566, 1405, 1489
MlsI TGGCCA 1 cut(s) 920
MluCI AATT 8 cut(s) 18, 558, 677, 748, 812, 907, 967, 1259
MluNI TGGCCA 1 cut(s) 920
MlyI GAGTC 1 cut(s) 314
Mox20I TGGCCA 1 cut(s) 920
MroI TCCGGA 1 cut(s) 1408
MroXI GAANNNNTTC 1 cut(s) 885
MscI TGGCCA 1 cut(s) 920
MseI TTAA 7 cut(s) 162, 177, 519, 1149, 1247, 1443, 1494
MslI CAYNNNNRTG 2 cut(s) 261, 1072
Msp20I TGGCCA 1 cut(s) 920
MspI CCGG 3 cut(s) 209, 979, 1409
Mva1269I GAATGC 1 cut(s) 1230
MvnI CGCG 2 cut(s) 281, 503
MwoI GCNNNNNNNGC 6 cut(s) 437, 482, 497, 626, 641, 941
NlaIII CATG 6 cut(s) 223, 594, 1071, 1156, 1190, 1501
NlaIV GGNNCC 2 cut(s) 568, 1143
NmuCI GTSAC 2 cut(s) 350, 1192
NsbI TGCGCA 1 cut(s) 1044
NspI RCATGY 1 cut(s) 1501
OliI CACNNNNGTG 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 1388
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PctI GAATGC 1 cut(s) 1230
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 6 cut(s) 152, 248, 308, 505, 1423, 1454
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 7 cut(s) 334, 478, 502, 589, 1047, 1085, 1088
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 357
PsiI TTATAA 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 568, 1143
PspPI GGNCC 2 cut(s) 359, 902
PstI CTGCAG 1 cut(s) 1088
PsuI RGATCY 3 cut(s) 566, 1405, 1489
RsaI GTAC 3 cut(s) 170, 457, 530
RsaNI GTAC 3 cut(s) 169, 456, 529
RseI CAYNNNNRTG 2 cut(s) 261, 1072
SapI GCTCTTC 1 cut(s) 1388
SaqAI TTAA 7 cut(s) 162, 177, 519, 1149, 1247, 1443, 1494
SatI GCNGC 7 cut(s) 333, 477, 501, 588, 1046, 1084, 1087
Sau96I GGNCC 2 cut(s) 359, 902
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 314
SfaNI GCATC 3 cut(s) 405, 644, 1089
SfcI CTRYAG 1 cut(s) 1084
SinI GGWCC 2 cut(s) 359, 902
SmiMI CAYNNNNRTG 2 cut(s) 261, 1072
Sse9I AATT 8 cut(s) 18, 558, 677, 748, 812, 907, 967, 1259
SsiI CCGC 3 cut(s) 501, 587, 1314
SspMI CTAG 6 cut(s) 87, 488, 1200, 1379, 1418, 1507
TaaI ACNGT 2 cut(s) 359, 959
TaiI ACGT 2 cut(s) 461, 519
TaqI TCGA 5 cut(s) 189, 765, 797, 846, 975
TasI AATT 8 cut(s) 18, 558, 677, 748, 812, 907, 967, 1259
TatI WGTACW 2 cut(s) 168, 528
TauI GCSGC 2 cut(s) 503, 590
TfiI GAWTC 6 cut(s) 152, 248, 308, 505, 1423, 1454
Tru1I TTAA 7 cut(s) 162, 177, 519, 1149, 1247, 1443, 1494
Tru9I TTAA 7 cut(s) 162, 177, 519, 1149, 1247, 1443, 1494
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 2 cut(s) 350, 1192
TseI GCWGC 5 cut(s) 332, 476, 1045, 1083, 1086
Tsp45I GTSAC 2 cut(s) 350, 1192
TspDTI ATGAA 3 cut(s) 39, 135, 165
TspGWI ACGGA 2 cut(s) 734, 852
TspRI CASTG 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 359, 902
XapI RAATTY 3 cut(s) 677, 907, 1259
XbaI TCTAGA 1 cut(s) 1378
XceI RCATGY 1 cut(s) 1501
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 6 cut(s) 87, 488, 1200, 1379, 1418, 1507
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.