Rroxscaffold_1G00024030

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
29755301 .. 29758783
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024030.1

Sequence Viewer

Length: 1371 bp
ATGGAAATGAAGCAACTCACATTCTCACTCAAATCATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAGGCCGGCCCAGCGAAGCTTCATCATCTGCATTTGATCCCAAAGATTTTCAGACATTTTACTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATCTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCAATACTCGCTTACTTAGGCGCAGAAGAATCAATTGATGTTGATATACCTATTATTGGGTTCCTATCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAGATTCTCATACATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCGTTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGCCTAAAGTATCCACACGTCGCTGTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTCGATGACATAGTTCCTCCAGAAACAGGGTACTACTCCATTGCCACCAAGGATTATCGAGAAGCGAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGACAATATTGCTTCTAAGCCTGAAGGCCTCTCAAATCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCAAGTCGTCTGAGCTCAAGGACTACTTGGACTCGATGTATACTAGGGCAGCTCAATACGATCGTCCACCGAATTATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCGGTCATGCTATGTCAACCCGCCCAAAAACCTAACAGAAACAGACGAGGGGTGGGGATGGCAGAACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGTTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTAGCTGTCCATGAAAAGAATGGGTCTCACTGCTTGGATATTCTCACCTCAAACCAGACTACCGATCCAGACTGGCTGGTCAATCAGCGGAAAAGTGAGGTCAGAATCATCAAAGGATGGATAGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

456

Amino Acids

51.06

Weight (kDa)

6.14

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 71 - 352 3.1e-52 Serine carboxypeptidase S28
Peptidase_S28 PF05577 378 - 435 8.6e-07 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1007
AasI GACNNNNNNGTC 2 cut(s) 874, 1289
Acc36I ACCTGC 1 cut(s) 1007
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 908
AciI CCGC 4 cut(s) 963, 1061, 1182, 1300
AclWI GGATC 3 cut(s) 173, 463, 1271
AcsI RAATTY 2 cut(s) 87, 845
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 2 cut(s) 431, 719
AfiI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
AflIII ACRYGT 2 cut(s) 544, 643
AgeI ACCGGT 2 cut(s) 426, 1041
AgsI TTSAA 6 cut(s) 229, 250, 260, 401, 502, 1358
AjiI CACGTC 1 cut(s) 646
Alw21I GWGCWC 4 cut(s) 313, 426, 661, 885
Alw26I GTCTC 4 cut(s) 752, 1124, 1158, 1242
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 3 cut(s) 173, 463, 1271
AoxI GGCC 4 cut(s) 145, 149, 663, 823
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 2 cut(s) 87, 845
AsiGI ACCGGT 2 cut(s) 426, 1041
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 1249
AsuNHI GCTAGC 1 cut(s) 1133
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 2 cut(s) 661, 885
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 1200
Bbv12I GWGCWC 4 cut(s) 313, 426, 661, 885
BbvI GCAGC 1 cut(s) 929
BccI CCATC 3 cut(s) 968, 1092, 1323
BciVI GTATCC 2 cut(s) 488, 648
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 752, 1124, 1158, 1242
BfaI CTAG 2 cut(s) 912, 1134
BfmI CTRYAG 3 cut(s) 516, 954, 987
BfuAI ACCTGC 1 cut(s) 1007
BfuI GTATCC 2 cut(s) 488, 648
BisI GCNGC 2 cut(s) 918, 1183
BlsI GCNGC 2 cut(s) 919, 1184
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 298, 374
BmtI GCTAGC 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 1200
BpmI CTGGAG 4 cut(s) 129, 392, 690, 1108
BpuEI CTTGAG 1 cut(s) 869
BsaI GGTCTC 2 cut(s) 1158, 1242
BsaJI CCNNGG 2 cut(s) 92, 735
BsaWI WCCGGW 5 cut(s) 426, 577, 946, 1034, 1041
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
Bse118I RCCGGY 3 cut(s) 147, 426, 1041
Bse1I ACTGG 2 cut(s) 112, 1289
Bse3DI GCAATG 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 92, 735
BseGI GGATG 3 cut(s) 35, 1103, 1334
BseLI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 5 cut(s) 87, 89, 519, 870, 1106
BseNI ACTGG 2 cut(s) 112, 1289
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 929
BseYI CCCAGC 1 cut(s) 152
Bsh1285I CGRYCG 2 cut(s) 582, 931
BshFI GGCC 4 cut(s) 147, 151, 665, 825
BshTI ACCGGT 2 cut(s) 426, 1041
BsiEI CGRYCG 2 cut(s) 582, 931
BsiHKAI GWGCWC 4 cut(s) 313, 426, 661, 885
BsiSI CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
BslI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
BsmAI GTCTC 4 cut(s) 752, 1124, 1158, 1242
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 4 cut(s) 147, 151, 665, 825
Bso31I GGTCTC 2 cut(s) 1158, 1242
Bsp1286I GDGCHC 4 cut(s) 313, 426, 661, 885
Bsp143I GATC 5 cut(s) 178, 273, 455, 928, 1276
BspACI CCGC 4 cut(s) 963, 1061, 1182, 1300
BspANI GGCC 4 cut(s) 147, 151, 665, 825
BspCNI CTCAG 5 cut(s) 86, 90, 518, 871, 1107
BspLI GGNNCC 2 cut(s) 298, 374
BspMI ACCTGC 1 cut(s) 1007
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 3 cut(s) 173, 463, 1271
BspTNI GGTCTC 2 cut(s) 1158, 1242
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 3 cut(s) 147, 426, 1041
BsrI ACTGG 2 cut(s) 112, 1289
BssAI RCCGGY 3 cut(s) 147, 426, 1041
BssECI CCNNGG 2 cut(s) 92, 735
BssMI GATC 5 cut(s) 178, 273, 455, 928, 1276
BssNAI GTATAC 1 cut(s) 909
BssT1I CCWWGG 2 cut(s) 92, 735
Bst1107I GTATAC 1 cut(s) 909
Bst4CI ACNGT 4 cut(s) 864, 955, 1175, 1208
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 4 cut(s) 149, 484, 615, 1135
BstDEI CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 879, 1115
BstF5I GGATG 3 cut(s) 35, 1103, 1334
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 181, 276, 458, 931, 1279
BstMAI GTCTC 4 cut(s) 752, 1124, 1158, 1242
BstMBI GATC 5 cut(s) 178, 273, 455, 928, 1276
BstMCI CGRYCG 2 cut(s) 582, 931
BstMWI GCNNNNNNNGC 4 cut(s) 153, 527, 656, 671
BstNSI RCATGY 2 cut(s) 548, 566
BstSFI CTRYAG 3 cut(s) 516, 954, 987
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 929
BstV2I GAAGAC 1 cut(s) 1200
BstZ17I GTATAC 1 cut(s) 909
BsuI GTATCC 2 cut(s) 488, 648
BsuRI GGCC 4 cut(s) 147, 151, 665, 825
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 3 cut(s) 35, 1103, 1334
BtsI GCAGTG 1 cut(s) 1240
BtsIMutI CAGTG 3 cut(s) 313, 1213, 1240
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 4 cut(s) 149, 484, 615, 1135
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 3 cut(s) 147, 426, 1041
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 430, 718
CspAI ACCGGT 2 cut(s) 426, 1041
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 6 cut(s) 125, 545, 563, 621, 1047, 1223
CviQI GTAC 2 cut(s) 430, 718
DdeI CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 879, 1115
DpnI GATC 5 cut(s) 180, 275, 457, 930, 1278
DpnII GATC 5 cut(s) 178, 273, 455, 928, 1276
DraI TTTAAA 1 cut(s) 475
DrdI GACNNNNNNGTC 2 cut(s) 874, 1289
DseDI GACNNNNNNGTC 2 cut(s) 874, 1289
Ecl136II GAGCTC 2 cut(s) 659, 883
Eco130I CCWWGG 2 cut(s) 92, 735
Eco147I AGGCCT 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 661, 885
Eco31I GGTCTC 2 cut(s) 1158, 1242
Eco32I GATATC 1 cut(s) 269
Eco53kI GAGCTC 2 cut(s) 659, 883
Eco57I CTGAAG 1 cut(s) 840
EcoICRI GAGCTC 2 cut(s) 659, 883
EcoRV GATATC 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 92, 735
EcoT38I GRGCYC 2 cut(s) 661, 885
ErhI CCWWGG 2 cut(s) 92, 735
FaeI CATG 6 cut(s) 128, 548, 566, 624, 1050, 1226
FalI AAGNNNNNCTT 4 cut(s) 878, 910, 1153, 1185
FatI CATG 6 cut(s) 124, 544, 562, 620, 1046, 1222
FauI CCCGC 1 cut(s) 1068
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 2 cut(s) 918, 1183
FokI GGATG 3 cut(s) 22, 1110, 1341
FriOI GRGCYC 2 cut(s) 661, 885
FseI GGCCGGCC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 918, 1183
FspBI CTAG 2 cut(s) 912, 1134
GlaI GCGC 1 cut(s) 334
GluI GCNGC 2 cut(s) 918, 1183
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 4 cut(s) 129, 392, 690, 1108
HaeIII GGCC 4 cut(s) 147, 151, 665, 825
HapII CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
HhaI GCGC 1 cut(s) 335
Hin1II CATG 6 cut(s) 128, 548, 566, 624, 1050, 1226
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 2 cut(s) 867, 1057
HindII GTYRAC 2 cut(s) 867, 1057
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 7 cut(s) 100, 341, 440, 535, 899, 1117, 1317
HpaII CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
HphI GGTGA 1 cut(s) 1249
Hpy166II GTNNAC 5 cut(s) 311, 867, 909, 935, 1057
Hpy188I TCNGA 9 cut(s) 195, 273, 382, 455, 793, 851, 880, 1204, 1316
Hpy188III TCNNGA 5 cut(s) 409, 707, 746, 1125, 1280
Hpy8I GTNNAC 5 cut(s) 311, 867, 909, 935, 1057
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 50, 815, 1364
HpyCH4III ACNGT 4 cut(s) 864, 955, 1175, 1208
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 7 cut(s) 173, 311, 482, 530, 858, 1016, 1028
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 527, 656, 671
HpyF3I CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 879, 1115
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 6 cut(s) 128, 548, 566, 624, 1050, 1226
HspAI GCGC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 178, 273, 455, 928, 1276
LmnI GCTCC 4 cut(s) 302, 656, 679, 977
Lsp1109I GCAGC 1 cut(s) 929
MaeI CTAG 2 cut(s) 912, 1134
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 64, 128, 949
MalI GATC 5 cut(s) 180, 275, 457, 930, 1278
MboI GATC 5 cut(s) 178, 273, 455, 928, 1276
MboII GAAGA 2 cut(s) 350, 1205
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 4 cut(s) 313, 426, 661, 885
MluCI AATT 8 cut(s) 87, 116, 277, 345, 678, 795, 845, 940
MlyI GAGTC 3 cut(s) 109, 893, 1126
MmeI TCCRAC 2 cut(s) 128, 634
MnlI CCTC 9 cut(s) 82, 104, 416, 676, 714, 836, 1081, 1270, 1303
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 3 cut(s) 83, 474, 1160
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 1300
MspI CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 615
MwoI GCNNNNNNNGC 4 cut(s) 153, 527, 656, 671
NaeI GCCGGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 601
NdeII GATC 5 cut(s) 178, 273, 455, 928, 1276
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 6 cut(s) 128, 548, 566, 624, 1050, 1226
NlaIV GGNNCC 2 cut(s) 298, 374
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 2 cut(s) 548, 566
PaqCI CACCTGC 1 cut(s) 1007
PceI AGGCCT 1 cut(s) 825
PciI ACATGT 1 cut(s) 544
PctI GAATGC 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 341, 440, 535, 1317
PflFI GACNNNGTC 1 cut(s) 871
PflMI CCANNNNNTGG 1 cut(s) 288
PinAI ACCGGT 2 cut(s) 426, 1041
PkrI GCNGC 2 cut(s) 919, 1184
Ple19I CGATCG 1 cut(s) 931
PleI GAGTC 3 cut(s) 108, 893, 1125
PpsI GAGTC 3 cut(s) 108, 893, 1125
PscI ACATGT 1 cut(s) 544
Psp124BI GAGCTC 2 cut(s) 661, 885
PspFI CCCAGC 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 298, 374
PspPI GGNCC 1 cut(s) 150
PsyI GACNNNGTC 1 cut(s) 871
PvuI CGATCG 1 cut(s) 931
RigI GGCCGGCC 1 cut(s) 151
RsaI GTAC 2 cut(s) 431, 719
RsaNI GTAC 2 cut(s) 430, 718
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 2 cut(s) 661, 885
SaqAI TTAA 3 cut(s) 83, 474, 1160
SatI GCNGC 2 cut(s) 918, 1183
Sau3AI GATC 5 cut(s) 178, 273, 455, 928, 1276
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 3 cut(s) 109, 893, 1126
SduI GDGCHC 4 cut(s) 313, 426, 661, 885
SfcI CTRYAG 3 cut(s) 516, 954, 987
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
Sse9I AATT 8 cut(s) 87, 116, 277, 345, 678, 795, 845, 940
SseBI AGGCCT 1 cut(s) 825
SsiI CCGC 4 cut(s) 963, 1061, 1182, 1300
SspI AATATT 2 cut(s) 805, 1011
SspMI CTAG 2 cut(s) 912, 1134
SstI GAGCTC 2 cut(s) 661, 885
StuI AGGCCT 1 cut(s) 825
StyI CCWWGG 2 cut(s) 92, 735
TaaI ACNGT 4 cut(s) 864, 955, 1175, 1208
TaiI ACGT 1 cut(s) 648
TaqI TCGA 3 cut(s) 690, 745, 902
TasI AATT 8 cut(s) 87, 116, 277, 345, 678, 795, 845, 940
TauI GCSGC 1 cut(s) 1185
TfiI GAWTC 4 cut(s) 341, 440, 535, 1317
Tru1I TTAA 3 cut(s) 83, 474, 1160
Tru9I TTAA 3 cut(s) 83, 474, 1160
TscAI CASTG 3 cut(s) 313, 1213, 1247
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 5 cut(s) 23, 153, 609, 972, 1239
TspRI CASTG 3 cut(s) 313, 1213, 1247
Tth111I GACNNNGTC 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 2 cut(s) 87, 845
XceI RCATGY 2 cut(s) 548, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1229
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 2 cut(s) 912, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.