Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Reverse (-)

59908149 .. 59910603

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAATCCACTTATAGGTTCAGTTCTTCCATGCCTTGTCCTAATTATCTCTCGATTCGCCATAACCTCTGGTTCTCTACACGTTCCAAGGTTGAGTCCAATTAGACCAGGGAGATTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACCTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGTGGTTCCAATATTAGTGCACCAATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAAGCTCTCCTCATATATATAGAGCATCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGATATCCACATACATGTAAAGACGCGACTGAATGCTGAACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAACTAGTGAGACTTGCTACCAAACCATAAAACAGTCCTGGTCTGAAATTGATGCAATTGCTTCTATGCCTGATGGTCTCTCCAATCTTCGCAAAATGTTCCACACTTGCAGTTATAGTCCCTTGAGTGCGGCATCCTATCTCAAATACTCCTTGCAGTCAATGTACATGAAGGCAGCTCAGTTCGTTGATCCATCAACAAATCCAGTTAATGTGATCTGCAACGGTATTGATGGAGCTTCTTCAACTAACGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACACATGCTACCTTAATGATGCACCCAGTAGTATTAATGCATTACCAAGCGGTACTAACGATGATGAAACATCTGTGGGATGGAGTTGGCAGGCATGTAGTGAAATGGTGACCCCGGTTTTTGCTGTCGGCAACAACACCATGTTTCAACCTTCTTCTTTTGACCCACAGGCTACAGTAACAACTGCAAGGCACAGTATGGCGTCCCTTCTCGCCCTAACTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

369

Amino Acids

40.15

Weight (kDa)

5.67

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	62 - 195	8.6e-27	Serine carboxypeptidase S28
Peptidase_S28	PF05577	196 - 343	2.1e-09	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	261
AccII	CGCG	1 cut(s)	529
AciI	CCGC	2 cut(s)	710, 930
AclWI	GGATC	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	1082
AfaI	GTAC	4 cut(s)	260, 404, 746, 934
AfiI	CCNNNNNNNGG	3 cut(s)	14, 261, 1101
AflIII	ACRYGT	2 cut(s)	79, 517
AgsI	TTSAA	7 cut(s)	202, 233, 374, 449, 475, 825, 1028
AhlI	ACTAGT	1 cut(s)	584
AjnI	CCWGG	2 cut(s)	106, 617
AluBI	AGCT	6 cut(s)	137, 219, 377, 488, 758, 818
AluI	AGCT	6 cut(s)	137, 219, 377, 488, 758, 818
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	584, 662
Alw44I	GTGCAC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	1 cut(s)	856
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	755
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	995
AsuHPI	GGTGA	1 cut(s)	1000
BaeGI	GKGCMC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	767
BccI	CCATC	4 cut(s)	647, 781, 806, 954
BcgI	CGANNNNNNTGC	2 cut(s)	821, 855
BciT130I	CCWGG	2 cut(s)	108, 619
BclI	TGATCA	2 cut(s)	193, 246
BcnI	CCSGG	1 cut(s)	995
BcoDI	GTCTC	2 cut(s)	584, 662
BcuI	ACTAGT	1 cut(s)	584
BfaI	CTAG	3 cut(s)	432, 491, 585
BfmI	CTRYAG	1 cut(s)	1053
BisI	GCNGC	2 cut(s)	711, 756
BlsI	GCNGC	2 cut(s)	712, 757
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	108, 619, 995
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	3 cut(s)	108, 619, 995
BmrI	ACTGGG	2 cut(s)	271, 900
BmsI	GCATC	6 cut(s)	142, 406, 578, 622, 722, 889
BmuI	ACTGGG	2 cut(s)	271, 900
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	1082
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	4 cut(s)	86, 107, 301, 993
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 261, 1101
Bse1I	ACTGG	5 cut(s)	266, 346, 785, 906, 1105
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	108, 619
BseDI	CCNNGG	4 cut(s)	86, 107, 301, 993
BseGI	GGATG	2 cut(s)	713, 965
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	14, 261, 1101
BseMII	CTCAG	2 cut(s)	492, 773
BseNI	ACTGG	5 cut(s)	266, 346, 785, 906, 1105
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	551, 995
BslFI	GGGAC	2 cut(s)	684, 1069
BslI	CCNNNNNNNGG	3 cut(s)	14, 261, 1101
BsmAI	GTCTC	2 cut(s)	584, 662
BsmFI	GGGAC	2 cut(s)	684, 1069
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	858
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	5 cut(s)	119, 193, 246, 769, 795
BspACI	CCGC	2 cut(s)	710, 930
BspANI	GGCC	1 cut(s)	858
BspCNI	CTCAG	2 cut(s)	491, 772
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	5 cut(s)	266, 346, 785, 906, 1105
BssECI	CCNNGG	4 cut(s)	86, 107, 301, 993
BssMI	GATC	5 cut(s)	119, 193, 246, 769, 795
BssNI	GRCGYC	1 cut(s)	1082
BssT1I	CCWWGG	2 cut(s)	86, 301
Bst2UI	CCWGG	2 cut(s)	108, 619
Bst4CI	ACNGT	4 cut(s)	615, 806, 1057, 1076
BstACI	GRCGYC	1 cut(s)	1082
BstAPI	GCANNNNNTGC	2 cut(s)	152, 500
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	457, 856, 972
BstDEI	CTNAG	2 cut(s)	478, 759
BstEII	GGTNACC	1 cut(s)	988
BstF5I	GGATG	2 cut(s)	713, 965
BstFNI	CGCG	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	122, 196, 249, 772, 798
BstMAI	GTCTC	2 cut(s)	584, 662
BstMBI	GATC	5 cut(s)	119, 193, 246, 769, 795
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 465, 500
BstNI	CCWGG	2 cut(s)	108, 619
BstNSI	RCATGY	3 cut(s)	521, 888, 978
BstPI	GGTNACC	1 cut(s)	988
BstSCI	CCNGG	3 cut(s)	106, 617, 993
BstSFI	CTRYAG	1 cut(s)	1053
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	1 cut(s)	767
BsuRI	GGCC	1 cut(s)	858
BtsCI	GGATG	2 cut(s)	713, 965
Cac8I	GCNNGC	3 cut(s)	457, 856, 972
CfoI	GCGC	1 cut(s)	308
CseI	GACGC	2 cut(s)	535, 1071
Csp6I	GTAC	4 cut(s)	259, 403, 745, 933
CviAII	CATG	6 cut(s)	30, 518, 748, 885, 975, 1021
CviQI	GTAC	4 cut(s)	259, 403, 745, 933
DdeI	CTNAG	2 cut(s)	478, 759
DpnI	GATC	5 cut(s)	121, 195, 248, 771, 797
DpnII	GATC	5 cut(s)	119, 193, 246, 769, 795
Eco130I	CCWWGG	2 cut(s)	86, 301
Eco31I	GGTCTC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	988
EcoO65I	GGTNACC	1 cut(s)	988
EcoRII	CCWGG	2 cut(s)	106, 617
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	86, 301
EcoT22I	ATGCAT	1 cut(s)	922
ErhI	CCWWGG	2 cut(s)	86, 301
FaeI	CATG	6 cut(s)	33, 521, 751, 888, 978, 1024
FaqI	GGGAC	2 cut(s)	684, 1069
FatI	CATG	6 cut(s)	29, 517, 747, 884, 974, 1020
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	2 cut(s)	193, 246
Fnu4HI	GCNGC	2 cut(s)	711, 756
FokI	GGATG	2 cut(s)	700, 972
Fsp4HI	GCNGC	2 cut(s)	711, 756
FspBI	CTAG	3 cut(s)	432, 491, 585
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	711, 756
HaeIII	GGCC	1 cut(s)	858
HapII	CCGG	2 cut(s)	551, 995
HgaI	GACGC	2 cut(s)	535, 1071
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	1082
Hin1II	CATG	6 cut(s)	33, 521, 751, 888, 978, 1024
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	4 cut(s)	4, 54, 94, 413
HpaII	CCGG	2 cut(s)	551, 995
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	209, 625
Hpy188III	TCNNGA	2 cut(s)	51, 432
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	745, 1041, 1097
HpyCH4III	ACNGT	4 cut(s)	615, 806, 1057, 1076
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 465, 500
HpyF3I	CTNAG	2 cut(s)	478, 759
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	1082
Hsp92II	CATG	6 cut(s)	33, 521, 751, 888, 978, 1024
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	193, 246
Kzo9I	GATC	5 cut(s)	119, 193, 246, 769, 795
LmnI	GCTCC	1 cut(s)	815
Lsp1109I	GCAGC	1 cut(s)	767
LweI	GCATC	6 cut(s)	142, 406, 578, 622, 722, 889
MaeI	CTAG	3 cut(s)	432, 491, 585
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	988, 1057
MalI	GATC	5 cut(s)	121, 195, 248, 771, 797
MboI	GATC	5 cut(s)	119, 193, 246, 769, 795
MboII	GAAGA	4 cut(s)	17, 659, 813, 1026
MfeI	CAATTG	2 cut(s)	636, 867
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	6 cut(s)	42, 99, 250, 627, 636, 867
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	2 cut(s)	76, 392
Mph1103I	ATGCAT	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	3 cut(s)	789, 894, 915
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	2 cut(s)	551, 995
MspR9I	CCNGG	3 cut(s)	108, 619, 995
MunI	CAATTG	2 cut(s)	636, 867
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	108, 619
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 465, 500
NciI	CCSGG	1 cut(s)	995
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	119, 193, 246, 769, 795
NlaIII	CATG	6 cut(s)	33, 521, 751, 888, 978, 1024
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	988
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	3 cut(s)	521, 888, 978
PciI	ACATGT	1 cut(s)	517
PctI	GAATGC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	4, 54, 413
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	712, 757
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	106, 617
PspEI	GGTNACC	1 cut(s)	988
PspGI	CCWGG	2 cut(s)	106, 617
PspN4I	GGNNCC	1 cut(s)	271
RsaI	GTAC	4 cut(s)	260, 404, 746, 934
RsaNI	GTAC	4 cut(s)	259, 403, 745, 933
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	789, 894, 915
SatI	GCNGC	2 cut(s)	711, 756
Sau3AI	GATC	5 cut(s)	119, 193, 246, 769, 795
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	108, 619, 995
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	6 cut(s)	142, 406, 578, 622, 722, 889
SfcI	CTRYAG	1 cut(s)	1053
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
SpeI	ACTAGT	1 cut(s)	584
Sse9I	AATT	6 cut(s)	42, 99, 250, 627, 636, 867
SsiI	CCGC	2 cut(s)	710, 930
SspI	AATATT	3 cut(s)	277, 291, 849
SspMI	CTAG	3 cut(s)	432, 491, 585
StyD4I	CCNGG	3 cut(s)	106, 617, 993
StyI	CCWWGG	2 cut(s)	86, 301
TaaI	ACNGT	4 cut(s)	615, 806, 1057, 1076
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	52, 118, 131
TasI	AATT	6 cut(s)	42, 99, 250, 627, 636, 867
TatI	WGTACW	2 cut(s)	258, 744
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	4, 54, 413
Tru1I	TTAA	3 cut(s)	789, 894, 915
Tru9I	TTAA	3 cut(s)	789, 894, 915
TseFI	GTSAC	1 cut(s)	988
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	988
TspDTI	ATGAA	3 cut(s)	17, 764, 960
TspGWI	ACGGA	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	282
VspI	ATTAAT	1 cut(s)	915
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	3 cut(s)	521, 888, 978
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	432, 491, 585
ZrmI	AGTACT	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.