Rh1BG130700

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
21944296 .. 21947356
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG130700.1

Sequence Viewer

Length: 1512 bp
ATGGCATTCGAAACACAACTGCTGCCTCCAAGGATTTCCCATAACATTGAAATGAAGCAACTCACATTCTCACTCCAATCATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAGGCCGACCCAGCGAAGCTTCATCATCTGCATTTGATCCCAAAGATCTTCAGACATTTTACTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCTATACTCGCTTACTTAGGCGCAGAAGAATCAATTGATATTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAACGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAGCTACATGCTGAACATTCTCCGGTCATTGTTATCGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGTCTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCGTCAGCTCCAATTCTATACTTTGATGACATAGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATATTATTGCTTCTAAGCCTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCAGGGCAGCTCAATACGATCGTCCACCGAATTATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTACATCTACAGATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCTGTCATGCTATGTCAACCAGCCCAGAAATGTAACAGAAAGACACGTCGGGTGGGCCTGGCAGACATGTAGTGACATGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATCTCGATGAATTTATCAATAACTGCAAGGAAACCTATGGCGTCCCTCCCAGACCTAATTGGGTGACTACCTACTTTGGAGGCCATGACATAAAACTGAGTCTCTCCAGGTTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTAGCTGTCCATACAAAGAATGGGTCTCACTGCTTGGATATTTTCACCTCAACCCATGCCGATCCAGACTGGTTGGTCAATCAGCGGAAAAGTGAGGTCAGAATCATCAAAGGATGGATGGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

503

Amino Acids

56.42

Weight (kDa)

6.01

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 86 - 305 7.3e-49 Serine carboxypeptidase S28
Peptidase_S28 PF05577 356 - 482 9.6e-18 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 998
AasI GACNNNNNNGTC 1 cut(s) 1430
Acc36I ACCTGC 1 cut(s) 998
AccB7I CCANNNNNTGG 1 cut(s) 333
AciI CCGC 3 cut(s) 954, 1326, 1441
AclWI GGATC 3 cut(s) 218, 508, 1412
AcsI RAATTY 5 cut(s) 132, 579, 890, 1157, 1172
AcuI CTGAAG 2 cut(s) 221, 885
AcyI GRCGYC 1 cut(s) 1203
AfaI GTAC 2 cut(s) 476, 1154
AfiI CCNNNNNNNGG 4 cut(s) 155, 333, 413, 758
AflIII ACRYGT 3 cut(s) 589, 1075, 1097
AgeI ACCGGT 1 cut(s) 471
AgsI TTSAA 7 cut(s) 50, 274, 295, 305, 446, 547, 1499
AjiI CACGTC 2 cut(s) 691, 1078
AjnI CCWGG 2 cut(s) 1088, 1268
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
Alw21I GWGCWC 3 cut(s) 358, 471, 706
Alw26I GTCTC 4 cut(s) 797, 1268, 1302, 1386
Alw44I GTGCAC 1 cut(s) 354
AlwI GGATC 3 cut(s) 218, 508, 1412
AoxI GGCC 5 cut(s) 190, 708, 868, 1086, 1243
ApaLI GTGCAC 1 cut(s) 354
ApeKI GCWGC 3 cut(s) 22, 601, 908
ApoI RAATTY 5 cut(s) 132, 579, 890, 1157, 1172
ArsI GACNNNNNNTTYG 2 cut(s) 1364, 1396
AsiGI ACCGGT 1 cut(s) 471
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 1086
AsuHPI GGTGA 4 cut(s) 769, 1123, 1237, 1393
AsuII TTCGAA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 1277
BaeGI GKGCMC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 706
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 1344
Bbv12I GWGCWC 3 cut(s) 358, 471, 706
BbvI GCAGC 3 cut(s) 9, 613, 920
BccI CCATC 3 cut(s) 959, 1464, 1468
BciT130I CCWGG 2 cut(s) 1090, 1270
BciVI GTATCC 3 cut(s) 533, 693, 755
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 4 cut(s) 797, 1268, 1302, 1386
BfaI CTAG 2 cut(s) 798, 1278
BfmI CTRYAG 3 cut(s) 561, 945, 978
BfuAI ACCTGC 1 cut(s) 998
BfuI GTATCC 3 cut(s) 533, 693, 755
BglII AGATCT 1 cut(s) 232
BisI GCNGC 4 cut(s) 23, 602, 909, 1327
BlsI GCNGC 4 cut(s) 24, 603, 910, 1328
Bme1390I CCNGG 2 cut(s) 1090, 1270
BmgBI CACGTC 2 cut(s) 691, 1078
BmgT120I GGNCC 1 cut(s) 1086
BmiI GGNNCC 2 cut(s) 343, 419
BmrFI CCNGG 2 cut(s) 1090, 1270
BmtI GCTAGC 1 cut(s) 1281
BpiI GAAGAC 1 cut(s) 1344
BpmI CTGGAG 4 cut(s) 174, 437, 735, 1252
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 1203
BsaI GGTCTC 2 cut(s) 1302, 1386
BsaJI CCNNGG 3 cut(s) 29, 137, 780
BsaWI WCCGGW 4 cut(s) 471, 622, 937, 1025
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 333, 413, 758
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 2 cut(s) 157, 1430
BseBI CCWGG 2 cut(s) 1090, 1270
BseDI CCNNGG 3 cut(s) 29, 137, 780
BseGI GGATG 3 cut(s) 80, 1475, 1479
BseLI CCNNNNNNNGG 4 cut(s) 155, 333, 413, 758
BseMII CTCAG 4 cut(s) 132, 134, 564, 1250
BseNI ACTGG 2 cut(s) 157, 1430
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 3 cut(s) 9, 613, 920
BseYI CCCAGC 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 922
BshFI GGCC 5 cut(s) 192, 710, 870, 1088, 1245
BshTI ACCGGT 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 922
BsiHKAI GWGCWC 3 cut(s) 358, 471, 706
BsiSI CCGG 4 cut(s) 472, 623, 938, 1026
BslFI GGGAC 1 cut(s) 1190
BslI CCNNNNNNNGG 4 cut(s) 155, 333, 413, 758
BsmAI GTCTC 4 cut(s) 797, 1268, 1302, 1386
BsmFI GGGAC 1 cut(s) 1190
BsmI GAATGC 2 cut(s) 5, 660
BsnI GGCC 5 cut(s) 192, 710, 870, 1088, 1245
Bso31I GGTCTC 2 cut(s) 1302, 1386
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 358, 471, 706
Bsp143I GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
BspACI CCGC 3 cut(s) 954, 1326, 1441
BspANI GGCC 5 cut(s) 192, 710, 870, 1088, 1245
BspCNI CTCAG 4 cut(s) 131, 135, 563, 1251
BspLI GGNNCC 2 cut(s) 343, 419
BspMI ACCTGC 1 cut(s) 998
BspOI GCTAGC 1 cut(s) 1281
BspPI GGATC 3 cut(s) 218, 508, 1412
BspT104I TTCGAA 1 cut(s) 9
BspTNI GGTCTC 2 cut(s) 1302, 1386
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 2 cut(s) 157, 1430
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 29, 137, 780
BssMI GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
BssNI GRCGYC 1 cut(s) 1203
BssT1I CCWWGG 3 cut(s) 29, 137, 780
Bst2UI CCWGG 2 cut(s) 1090, 1270
Bst4CI ACNGT 4 cut(s) 946, 1152, 1319, 1352
BstACI GRCGYC 1 cut(s) 1203
BstAPI GCANNNNNTGC 1 cut(s) 572
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 529, 660, 1279
BstDEI CTNAG 8 cut(s) 118, 143, 373, 550, 858, 881, 1259, 1304
BstF5I GGATG 3 cut(s) 80, 1475, 1479
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 7 cut(s) 226, 235, 321, 503, 922, 1165, 1420
BstMAI GTCTC 4 cut(s) 797, 1268, 1302, 1386
BstMBI GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
BstMCI CGRYCG 1 cut(s) 922
BstMWI GCNNNNNNNGC 4 cut(s) 198, 572, 701, 716
BstNI CCWGG 2 cut(s) 1090, 1270
BstNSI RCATGY 3 cut(s) 593, 611, 1101
BstSCI CCNGG 2 cut(s) 1088, 1268
BstSFI CTRYAG 3 cut(s) 561, 945, 978
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 3 cut(s) 9, 613, 920
BstV2I GAAGAC 1 cut(s) 1344
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 3 cut(s) 533, 693, 755
BsuRI GGCC 5 cut(s) 192, 710, 870, 1088, 1245
BtrI CACGTC 2 cut(s) 691, 1078
BtsCI GGATG 3 cut(s) 80, 1475, 1479
BtsI GCAGTG 1 cut(s) 1384
BtsIMutI CAGTG 3 cut(s) 358, 1357, 1384
BveI ACCTGC 1 cut(s) 998
Cac8I GCNNGC 3 cut(s) 529, 660, 1279
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 1086
CseI GACGC 1 cut(s) 1192
Csp6I GTAC 2 cut(s) 475, 1153
CspAI ACCGGT 1 cut(s) 471
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviQI GTAC 2 cut(s) 475, 1153
DdeI CTNAG 8 cut(s) 118, 143, 373, 550, 858, 881, 1259, 1304
DpnI GATC 7 cut(s) 225, 234, 320, 502, 921, 1164, 1419
DpnII GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
DraI TTTAAA 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 1430
DseDI GACNNNNNNGTC 1 cut(s) 1430
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 3 cut(s) 29, 137, 780
Eco147I AGGCCT 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 706
Eco31I GGTCTC 2 cut(s) 1302, 1386
Eco53kI GAGCTC 1 cut(s) 704
Eco57I CTGAAG 2 cut(s) 221, 885
EcoICRI GAGCTC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 1088, 1268
EcoT14I CCWWGG 3 cut(s) 29, 137, 780
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 3 cut(s) 29, 137, 780
FalI AAGNNNNNCTT 2 cut(s) 1297, 1329
FaqI GGGAC 1 cut(s) 1190
FauNDI CATATG 1 cut(s) 646
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 4 cut(s) 23, 602, 909, 1327
FokI GGATG 3 cut(s) 67, 1482, 1486
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 4 cut(s) 23, 602, 909, 1327
FspBI CTAG 2 cut(s) 798, 1278
GlaI GCGC 1 cut(s) 379
GluI GCNGC 4 cut(s) 23, 602, 909, 1327
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 4 cut(s) 174, 437, 735, 1252
HaeIII GGCC 5 cut(s) 192, 710, 870, 1088, 1245
HapII CCGG 4 cut(s) 472, 623, 938, 1026
HgaI GACGC 1 cut(s) 1192
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 1203
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 6 cut(s) 145, 386, 485, 1114, 1261, 1458
HpaII CCGG 4 cut(s) 472, 623, 938, 1026
HphI GGTGA 4 cut(s) 769, 1123, 1237, 1393
Hpy166II GTNNAC 4 cut(s) 356, 926, 1048, 1129
Hpy188I TCNGA 6 cut(s) 240, 500, 838, 896, 1348, 1457
Hpy188III TCNNGA 5 cut(s) 454, 752, 791, 1166, 1421
Hpy8I GTNNAC 4 cut(s) 356, 926, 1048, 1129
Hpy99I CGWCG 2 cut(s) 695, 1082
HpyAV CCTTC 3 cut(s) 95, 860, 1505
HpyCH4III ACNGT 4 cut(s) 946, 1152, 1319, 1352
HpyCH4IV ACGT 2 cut(s) 690, 1077
HpyCH4V TGCA 8 cut(s) 218, 356, 527, 575, 903, 1007, 1019, 1188
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 572, 701, 716
HpyF3I CTNAG 8 cut(s) 118, 143, 373, 550, 858, 881, 1259, 1304
HpySE526I ACGT 2 cut(s) 690, 1077
Hsp92I GRCGYC 1 cut(s) 1203
HspAI GCGC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
LmnI GCTCC 4 cut(s) 347, 701, 724, 968
Lsp1109I GCAGC 3 cut(s) 9, 613, 920
MaeI CTAG 2 cut(s) 798, 1278
MaeII ACGT 2 cut(s) 690, 1077
MaeIII GTNAC 7 cut(s) 109, 173, 775, 940, 1063, 1103, 1225
MalI GATC 7 cut(s) 225, 234, 320, 502, 921, 1164, 1419
MboI GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
MboII GAAGA 3 cut(s) 227, 395, 1349
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 3 cut(s) 358, 471, 706
MlyI GAGTC 2 cut(s) 154, 1270
MmeI TCCRAC 1 cut(s) 173
MseI TTAA 2 cut(s) 128, 519
MslI CAYNNNNRTG 3 cut(s) 50, 336, 1124
MspA1I CMGCKG 1 cut(s) 1441
MspI CCGG 4 cut(s) 472, 623, 938, 1026
MspR9I CCNGG 2 cut(s) 1090, 1270
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 2 cut(s) 5, 660
MvaI CCWGG 2 cut(s) 1090, 1270
MwoI GCNNNNNNNGC 4 cut(s) 198, 572, 701, 716
NdeI CATATG 1 cut(s) 646
NdeII GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
NheI GCTAGC 1 cut(s) 1277
NlaIV GGNNCC 2 cut(s) 343, 419
NmuCI GTSAC 4 cut(s) 109, 775, 1103, 1225
NspI RCATGY 3 cut(s) 593, 611, 1101
NspV TTCGAA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 998
PceI AGGCCT 1 cut(s) 870
PciI ACATGT 2 cut(s) 589, 1097
PctI GAATGC 2 cut(s) 5, 660
PfeI GAWTC 4 cut(s) 386, 485, 1114, 1458
PflMI CCANNNNNTGG 1 cut(s) 333
PinAI ACCGGT 1 cut(s) 471
PkrI GCNGC 4 cut(s) 24, 603, 910, 1328
Ple19I CGATCG 1 cut(s) 922
PleI GAGTC 2 cut(s) 153, 1269
PpsI GAGTC 2 cut(s) 153, 1269
PscI ACATGT 2 cut(s) 589, 1097
Psp124BI GAGCTC 1 cut(s) 706
Psp6I CCWGG 2 cut(s) 1088, 1268
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 1088, 1268
PspN4I GGNNCC 2 cut(s) 343, 419
PspPI GGNCC 1 cut(s) 1086
PsuI RGATCY 1 cut(s) 232
PvuI CGATCG 1 cut(s) 922
RsaI GTAC 2 cut(s) 476, 1154
RsaNI GTAC 2 cut(s) 475, 1153
RseI CAYNNNNRTG 3 cut(s) 50, 336, 1124
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 128, 519
SatI GCNGC 4 cut(s) 23, 602, 909, 1327
Sau3AI GATC 7 cut(s) 223, 232, 318, 500, 919, 1162, 1417
Sau96I GGNCC 1 cut(s) 1086
SchI GAGTC 2 cut(s) 154, 1270
ScrFI CCNGG 2 cut(s) 1090, 1270
SduI GDGCHC 3 cut(s) 358, 471, 706
SfcI CTRYAG 3 cut(s) 561, 945, 978
SfuI TTCGAA 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 50, 336, 1124
SmlI CTYRAG 1 cut(s) 874
SmoI CTYRAG 1 cut(s) 874
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 3 cut(s) 954, 1326, 1441
SspI AATATT 1 cut(s) 1002
SspMI CTAG 2 cut(s) 798, 1278
SstI GAGCTC 1 cut(s) 706
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 1088, 1268
StyI CCWWGG 3 cut(s) 29, 137, 780
TaaI ACNGT 4 cut(s) 946, 1152, 1319, 1352
TaiI ACGT 2 cut(s) 693, 1080
TaqI TCGA 3 cut(s) 9, 790, 1167
TauI GCSGC 1 cut(s) 1329
TfiI GAWTC 4 cut(s) 386, 485, 1114, 1458
Tru1I TTAA 2 cut(s) 128, 519
Tru9I TTAA 2 cut(s) 128, 519
TscAI CASTG 3 cut(s) 358, 1357, 1391
TseFI GTSAC 4 cut(s) 109, 775, 1103, 1225
TseI GCWGC 3 cut(s) 22, 601, 908
Tsp45I GTSAC 4 cut(s) 109, 775, 1103, 1225
TspDTI ATGAA 4 cut(s) 68, 198, 654, 1185
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 3 cut(s) 358, 1357, 1391
Van91I CCANNNNNTGG 1 cut(s) 333
VneI GTGCAC 1 cut(s) 354
XapI RAATTY 5 cut(s) 132, 579, 890, 1157, 1172
XceI RCATGY 3 cut(s) 593, 611, 1101
XcmI CCANNNNNNNNNTGG 2 cut(s) 695, 1373
XspI CTAG 2 cut(s) 798, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.