Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

11310274 .. 11311103

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAACCCACTCATATCTTTGCTTCAATGCCTTGTGCTAATTATTTCTCTCTGTATCACAATCTCAGTTTCTGCTACACGTTTTAACATCCCGCGGCTAAGTCCCAATGCTGGAGCATTCGTACAAGGAAATTATTTTGCACGCGACCACCCAAAACCTTTGTCTGCCTTTGATCGATTTACAGAATTTCAAACATTTTATTACAACCAAACACTTGACCATTTCAACTTCAGGCCTGATAGCTTCAATACTTTTCAGCAAAGATATTTGATCGATTTCAAGCATTGGGGAGGCTCCAATATCAGCGCACCAATATTTGCTTACCTCGGTGAAGAAGATGCCATTGATGCTGATCTGTCTATTATTGGCTTTCTTAGTGAAAACGCGGATAAGTTTCAAGCTCTCCAGATATTTATCGAGAGCACCGTTACTATGGGCAATCAGTCCCATTTGGATCAAGGGAAGAGGGATTTAAAAATGCAAGCACTATTGGGTACTTCAACTCAGCTCAAGCAATGGCAGATTATGCAGAGATCCTCATACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

183

Amino Acids

20.82

Weight (kDa)

6.04

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	94, 144, 386
AciI	CCGC	3 cut(s)	92, 94, 386
AclWI	GGATC	2 cut(s)	462, 528
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	214
AfaI	GTAC	2 cut(s)	123, 496
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflIII	ACRYGT	2 cut(s)	77, 543
AgsI	TTSAA	7 cut(s)	26, 191, 226, 247, 280, 398, 501
AluBI	AGCT	3 cut(s)	243, 401, 508
AluI	AGCT	3 cut(s)	243, 401, 508
Alw21I	GWGCWC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	462, 528
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	425
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	2 cut(s)	328, 337
BpmI	CTGGAG	2 cut(s)	132, 389
BpuEI	CTTGAG	1 cut(s)	494
Bsa29I	ATCGAT	2 cut(s)	175, 273
BsaBI	GATNNNNATC	2 cut(s)	351, 413
BsaJI	CCNNGG	2 cut(s)	92, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	521
Bse8I	GATNNNNATC	2 cut(s)	351, 413
BseCI	ATCGAT	2 cut(s)	175, 273
BseDI	CCNNGG	2 cut(s)	92, 325
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	2 cut(s)	351, 413
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	78, 518
Bsh1236I	CGCG	3 cut(s)	94, 144, 386
BshFI	GGCC	1 cut(s)	235
BshVI	ATCGAT	2 cut(s)	175, 273
BsiHKAI	GWGCWC	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	87, 430
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	87, 430
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	5 cut(s)	172, 270, 352, 454, 533
BspACI	CCGC	3 cut(s)	92, 94, 386
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	77, 517
BspDI	ATCGAT	2 cut(s)	175, 273
BspFNI	CGCG	3 cut(s)	94, 144, 386
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	462, 528
BsrDI	GCAATG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	92, 325
BssMI	GATC	5 cut(s)	172, 270, 352, 454, 533
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	142, 483
BstDEI	CTNAG	4 cut(s)	64, 98, 374, 504
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	3 cut(s)	94, 144, 386
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	175, 273, 355, 457, 536
BstMBI	GATC	5 cut(s)	172, 270, 352, 454, 533
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 526
BstNSI	RCATGY	1 cut(s)	547
BstUI	CGCG	3 cut(s)	94, 144, 386
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
Bsu15I	ATCGAT	2 cut(s)	175, 273
BsuRI	GGCC	1 cut(s)	235
BsuTUI	ATCGAT	2 cut(s)	175, 273
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	142, 483
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	308
Cfr42I	CCGCGG	1 cut(s)	95
ClaI	ATCGAT	2 cut(s)	175, 273
Csp6I	GTAC	2 cut(s)	122, 495
CviAII	CATG	1 cut(s)	544
CviJI	RGCY	7 cut(s)	97, 235, 243, 294, 369, 401, 508
CviKI_1	RGCY	7 cut(s)	97, 235, 243, 294, 369, 401, 508
CviQI	GTAC	2 cut(s)	122, 495
DdeI	CTNAG	4 cut(s)	64, 98, 374, 504
DpnI	GATC	5 cut(s)	174, 272, 354, 456, 535
DpnII	GATC	5 cut(s)	172, 270, 352, 454, 533
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	214
FaeI	CATG	1 cut(s)	547
FaiI	YATR	5 cut(s)	14, 434, 527, 541, 545
FaqI	GGGAC	2 cut(s)	87, 430
FatI	CATG	1 cut(s)	543
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	95
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	2 cut(s)	132, 389
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HphI	GGTGA	1 cut(s)	341
Hpy188III	TCNNGA	2 cut(s)	406, 418
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	140, 481, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 526
HpyF3I	CTNAG	4 cut(s)	64, 98, 374, 504
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	172, 270, 352, 454, 533
LmnI	GCTCC	2 cut(s)	113, 299
LpnPI	CCDG	4 cut(s)	96, 217, 249, 419
LweI	GCATC	2 cut(s)	328, 337
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	5 cut(s)	174, 272, 354, 456, 535
MboI	GATC	5 cut(s)	172, 270, 352, 454, 533
MboII	GAAGA	3 cut(s)	344, 347, 475
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	39, 130, 185
MnlI	CCTC	4 cut(s)	284, 335, 459, 547
MseI	TTAA	2 cut(s)	84, 473
MspA1I	CMGCKG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	116
MvnI	CGCG	3 cut(s)	94, 144, 386
MwoI	GCNNNNNNNGC	2 cut(s)	347, 526
NdeII	GATC	5 cut(s)	172, 270, 352, 454, 533
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	235
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	2 cut(s)	123, 496
RsaNI	GTAC	2 cut(s)	122, 495
SacII	CCGCGG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	84, 473
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	5 cut(s)	172, 270, 352, 454, 533
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	6 cut(s)	82, 160, 245, 327, 403, 510
SfaNI	GCATC	2 cut(s)	328, 337
Sfr303I	CCGCGG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	39, 130, 185
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	3 cut(s)	92, 94, 386
SspI	AATATT	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	175, 273, 417
TasI	AATT	3 cut(s)	39, 130, 185
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	84, 473
Tru9I	TTAA	2 cut(s)	84, 473
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.