FvH4_3g30280

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
23488749 .. 23491663
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30280.t1

Sequence Viewer

Length: 1473 bp
ATGAACTCACTTATAGGTCCAGTTCTTCAATGCCTTGTACTAATTATCTCTCGACTCGCCATAACATCTGATTCTCTACACATCCCAAGGTTGAGTCCAATTAGATCCGGGATGTTTCGGTCACTCCAATCGGAAGCTTTGTCTGCATTTGATCCAAGTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGCGGTTCCAATATTAGTGCACCGATATTTGCTTACCTTGGCGCGGAAGTATCATTGGATAGTGTTATATCCTACACTGGCTTTCTACCTGAAAACGCCAATCAGTTTCAAGCCCTCCTCATATACATACAGCACCGGTACTACGGCGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAGAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCGTACATGTAAAGACGCAACTGAATGCTGAACATTCTCCGGTCATTGTTATTGGTGGATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTGAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCGTCGGCTCCAATTCTTTACTTTGATGACATTATCCCTCCGGAAAATGGATACTTGTCCATTGTCACCAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATTAAACAGTCTTGGTCTGAAATTGATACGATTGCTTCTATGCCTGATGGTCTCTCAAATCTTAGCAAAATATTCCGCACTTGCAGTCCTTTGAGGACGGCACACCATCTCAAATACTCCTTGCAGTTAATGTACACGAGGGCAGCTCAGTTCGATGATCCATCAACAAATCCAGTTAATGTGATTTGCAGTGGTATCGATGGAGCTGCTTCTTTGACGAATGATACTCTTGCGAAAATCTTTGCTGGACTTGTTGCAATTGAAGGAAACAGGTCATGCTACCTTAGTATTGCACCCAGTAGTAGTAGTACTAATGCACTACCAAGCAATGCTAATGATGAAACTTCTGAGGGATGGAGTTGGCAGGCATGTAGTGAAATGGTGATGCCGGTTTTTGCAGTCGGCAACAACACCATGTTTCAACCTTATTCTTTCGACGTACAAAGCTACATTAACAACTGCAAGGCACAGTATGGCGTCCCTTCTCGCCCTAACTGGATCACTACATATTATGGAGGTCACGATATAAAACTGACCCTCTATAGGTTCGCCAGTAACATCATTTTCTCTAATGGATTAAGAGATCCTTACAGCAGTGGCAGGGTATTACAAAATATATCGGACAGTCTTGTCGCAGTTTATACAAAGAATGACTTAACTCCTGGGGCAGCCTTTGGATCTACAGTAGCACCACCGCCGCCGGATGGCCAGCCTATGAGGCTATGA

Protein Analysis

491

Amino Acids

54.01

Weight (kDa)

5.49

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 62 - 464 5.8e-67 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1376
AccB7I CCANNNNNTGG 1 cut(s) 261
AccII CGCG 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 679
AciI CCGC 5 cut(s) 267, 308, 823, 1442, 1445
AclWI GGATC 8 cut(s) 99, 146, 502, 577, 899, 1253, 1325, 1432
AcoI YGGCCR 1 cut(s) 1453
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 1224
AfaI GTAC 7 cut(s) 39, 260, 404, 516, 881, 1057, 1188
AfiI CCNNNNNNNGG 5 cut(s) 261, 307, 686, 1290, 1451
AflIII ACRYGT 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 7 cut(s) 29, 202, 233, 374, 475, 1010, 1169
AjnI CCWGG 1 cut(s) 1408
AluBI AGCT 9 cut(s) 137, 219, 488, 632, 638, 725, 893, 953, 1194
AluI AGCT 9 cut(s) 137, 219, 488, 632, 638, 725, 893, 953, 1194
Alw21I GWGCWC 2 cut(s) 286, 634
Alw26I GTCTC 2 cut(s) 725, 803
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 8 cut(s) 99, 146, 502, 577, 899, 1253, 1325, 1432
Aor13HI TCCGGA 1 cut(s) 679
AoxI GGCC 1 cut(s) 1453
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 890, 953, 1415
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 697, 1141
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 286
BalI TGGCCA 1 cut(s) 1455
BanII GRGCYC 1 cut(s) 634
BauI CACGAG 1 cut(s) 883
Bbv12I GWGCWC 2 cut(s) 286, 634
BbvI GCAGC 3 cut(s) 902, 940, 1427
BccI CCATC 6 cut(s) 788, 861, 916, 941, 1095, 1445
BceAI ACGGC 2 cut(s) 424, 861
BcgI CGANNNNNNTGC 4 cut(s) 925, 935, 959, 969
BciT130I CCWGG 1 cut(s) 1410
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 2 cut(s) 193, 246
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 725, 803
BfaI CTAG 4 cut(s) 432, 491, 635, 726
BfmI CTRYAG 2 cut(s) 1288, 1428
BfuI GTATCC 1 cut(s) 683
BglI GCCNNNNNGGC 1 cut(s) 1465
BisI GCNGC 4 cut(s) 891, 954, 1416, 1445
BlsI GCNGC 4 cut(s) 892, 955, 1417, 1446
BmcAI AGTACT 2 cut(s) 260, 1057
Bme1390I CCNGG 2 cut(s) 109, 1410
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 271, 648
BmrFI CCNGG 2 cut(s) 109, 1410
BmrI ACTGGG 2 cut(s) 271, 1038
BmsI GCATC 1 cut(s) 1122
BmuI ACTGGG 2 cut(s) 271, 1038
BplI GAGNNNNNCTC 2 cut(s) 877, 909
BpuMI CCSGG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 945
BsaHI GRCGYC 1 cut(s) 1224
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 4 cut(s) 86, 301, 708, 1409
BsaWI WCCGGW 3 cut(s) 399, 550, 679
Bsc4I CCNNNNNNNGG 5 cut(s) 261, 307, 686, 1290, 1451
Bse118I RCCGGY 2 cut(s) 399, 1135
Bse1I ACTGG 7 cut(s) 20, 266, 346, 920, 1044, 1247, 1299
Bse3DI GCAATG 1 cut(s) 1081
BseAI TCCGGA 1 cut(s) 679
BseBI CCWGG 1 cut(s) 1410
BseCI ATCGAT 1 cut(s) 945
BseDI CCNNGG 4 cut(s) 86, 301, 708, 1409
BseGI GGATG 4 cut(s) 81, 117, 1106, 1456
BseLI CCNNNNNNNGG 5 cut(s) 261, 307, 686, 1290, 1451
BseMI GCAATG 1 cut(s) 1081
BseMII CTCAG 4 cut(s) 492, 495, 908, 1086
BseNI ACTGG 7 cut(s) 20, 266, 346, 920, 1044, 1247, 1299
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 3 cut(s) 902, 940, 1427
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 1455
BshTI ACCGGT 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 945
BsiHKAI GWGCWC 2 cut(s) 286, 634
BsiSI CCGG 6 cut(s) 108, 400, 551, 680, 1136, 1448
BslFI GGGAC 1 cut(s) 1211
BslI CCNNNNNNNGG 5 cut(s) 261, 307, 686, 1290, 1451
BsmAI GTCTC 2 cut(s) 725, 803
BsmFI GGGAC 1 cut(s) 1211
BsmI GAATGC 3 cut(s) 457, 541, 588
BsnI GGCC 1 cut(s) 1455
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 286, 634
Bsp13I TCCGGA 1 cut(s) 679
Bsp1407I TGTACA 1 cut(s) 879
BspACI CCGC 5 cut(s) 267, 308, 823, 1442, 1445
BspANI GGCC 1 cut(s) 1455
BspCNI CTCAG 4 cut(s) 491, 496, 907, 1087
BspDI ATCGAT 1 cut(s) 945
BspEI TCCGGA 1 cut(s) 679
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 271, 648
BspPI GGATC 8 cut(s) 99, 146, 502, 577, 899, 1253, 1325, 1432
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 1 cut(s) 1081
BsrFI RCCGGY 2 cut(s) 399, 1135
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 7 cut(s) 20, 266, 346, 920, 1044, 1247, 1299
BssAI RCCGGY 2 cut(s) 399, 1135
BssECI CCNNGG 4 cut(s) 86, 301, 708, 1409
BssNI GRCGYC 1 cut(s) 1224
BssSI CACGAG 1 cut(s) 883
BssT1I CCWWGG 3 cut(s) 86, 301, 708
Bst2BI CACGAG 1 cut(s) 883
Bst2UI CCWGG 1 cut(s) 1410
Bst4CI ACNGT 4 cut(s) 756, 1218, 1373, 1432
BstACI GRCGYC 1 cut(s) 1224
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 879
BstC8I GCNNGC 4 cut(s) 457, 588, 1113, 1457
BstDEI CTNAG 6 cut(s) 478, 504, 809, 894, 1031, 1095
BstF5I GGATG 4 cut(s) 81, 117, 1106, 1456
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 1 cut(s) 308
BstMAI GTCTC 2 cut(s) 725, 803
BstMWI GCNNNNNNNGC 6 cut(s) 143, 465, 500, 629, 644, 1465
BstNI CCWGG 1 cut(s) 1410
BstNSI RCATGY 2 cut(s) 521, 1119
BstSCI CCNGG 2 cut(s) 107, 1408
BstSFI CTRYAG 2 cut(s) 1288, 1428
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 3 cut(s) 902, 940, 1427
BstX2I RGATCY 4 cut(s) 104, 507, 1330, 1424
BstYI RGATCY 4 cut(s) 104, 507, 1330, 1424
Bsu15I ATCGAT 1 cut(s) 945
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 1 cut(s) 1455
BsuTUI ATCGAT 1 cut(s) 945
BtsCI GGATG 4 cut(s) 81, 117, 1106, 1456
BtsI GCAGTG 2 cut(s) 943, 1348
BtsIMutI CAGTG 3 cut(s) 339, 943, 1348
Cac8I GCNNGC 4 cut(s) 457, 588, 1113, 1457
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 2 cut(s) 399, 1135
Cfr13I GGNCC 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 945
CseI GACGC 2 cut(s) 535, 1213
Csp6I GTAC 7 cut(s) 38, 259, 403, 515, 880, 1056, 1187
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 5 cut(s) 518, 594, 1023, 1116, 1162
CviQI GTAC 7 cut(s) 38, 259, 403, 515, 880, 1056, 1187
DdeI CTNAG 6 cut(s) 478, 504, 809, 894, 1031, 1095
DrdI GACNNNNNNGTC 1 cut(s) 1376
DseDI GACNNNNNNGTC 1 cut(s) 1376
EaeI YGGCCR 1 cut(s) 1453
Ecl136II GAGCTC 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 86, 301, 708
Eco24I GRGCYC 1 cut(s) 634
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 1408
EcoT14I CCWWGG 3 cut(s) 86, 301, 708
EcoT38I GRGCYC 1 cut(s) 634
ErhI CCWWGG 3 cut(s) 86, 301, 708
FaeI CATG 5 cut(s) 521, 597, 1026, 1119, 1165
FalI AAGNNNNNCTT 4 cut(s) 1318, 1350, 1385, 1417
FaqI GGGAC 1 cut(s) 1211
FatI CATG 5 cut(s) 517, 593, 1022, 1115, 1161
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 193, 246
Fnu4HI GCNGC 4 cut(s) 891, 954, 1416, 1445
FokI GGATG 4 cut(s) 68, 124, 1113, 1463
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 4 cut(s) 891, 954, 1416, 1445
FspBI CTAG 4 cut(s) 432, 491, 635, 726
GlaI GCGC 1 cut(s) 307
GluI GCNGC 4 cut(s) 891, 954, 1416, 1445
HaeIII GGCC 1 cut(s) 1455
HapII CCGG 6 cut(s) 108, 400, 551, 680, 1136, 1448
HgaI GACGC 2 cut(s) 535, 1213
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 1224
Hin1II CATG 5 cut(s) 521, 597, 1026, 1119, 1165
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 4 cut(s) 54, 71, 94, 413
HpaII CCGG 6 cut(s) 108, 400, 551, 680, 1136, 1448
HphI GGTGA 2 cut(s) 697, 1141
Hpy166II GTNNAC 2 cut(s) 284, 882
Hpy188I TCNGA 7 cut(s) 70, 133, 209, 450, 766, 1096, 1369
Hpy188III TCNNGA 5 cut(s) 51, 432, 680, 719, 1268
Hpy8I GTNNAC 2 cut(s) 284, 882
Hpy99I CGWCG 2 cut(s) 646, 1187
HpyAV CCTTC 2 cut(s) 1004, 1239
HpyCH4III ACNGT 4 cut(s) 756, 1218, 1373, 1432
HpyCH4IV ACGT 1 cut(s) 1185
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 465, 500, 629, 644, 1465
HpyF3I CTNAG 6 cut(s) 478, 504, 809, 894, 1031, 1095
HpySE526I ACGT 1 cut(s) 1185
Hsp92I GRCGYC 1 cut(s) 1224
Hsp92II CATG 5 cut(s) 521, 597, 1026, 1119, 1165
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 679
Ksp22I TGATCA 2 cut(s) 193, 246
LmnI GCTCC 3 cut(s) 629, 652, 950
Lsp1109I GCAGC 3 cut(s) 902, 940, 1427
LweI GCATC 1 cut(s) 1122
MaeI CTAG 4 cut(s) 432, 491, 635, 726
MaeII ACGT 1 cut(s) 1185
MaeIII GTNAC 4 cut(s) 120, 703, 1265, 1301
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 1005
MflI RGATCY 4 cut(s) 104, 507, 1330, 1424
MhlI GDGCHC 2 cut(s) 286, 634
MlsI TGGCCA 1 cut(s) 1455
MluCI AATT 6 cut(s) 42, 99, 250, 651, 768, 1005
MluNI TGGCCA 1 cut(s) 1455
MlyI GAGTC 2 cut(s) 48, 103
Mox20I TGGCCA 1 cut(s) 1455
MroI TCCGGA 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 1455
MseI TTAA 6 cut(s) 750, 875, 924, 1200, 1325, 1403
Msp20I TGGCCA 1 cut(s) 1455
MspI CCGG 6 cut(s) 108, 400, 551, 680, 1136, 1448
MspR9I CCNGG 2 cut(s) 109, 1410
MunI CAATTG 1 cut(s) 1005
Mva1269I GAATGC 3 cut(s) 457, 541, 588
MvaI CCWGG 1 cut(s) 1410
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 6 cut(s) 143, 465, 500, 629, 644, 1465
NciI CCSGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 574
NlaIII CATG 5 cut(s) 521, 597, 1026, 1119, 1165
NlaIV GGNNCC 2 cut(s) 271, 648
NmuCI GTSAC 3 cut(s) 120, 703, 1265
NspI RCATGY 2 cut(s) 521, 1119
PciI ACATGT 1 cut(s) 517
PctI GAATGC 3 cut(s) 457, 541, 588
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 71, 413
PflMI CCANNNNNTGG 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 107
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 4 cut(s) 892, 955, 1417, 1446
PleI GAGTC 2 cut(s) 48, 102
PpsI GAGTC 2 cut(s) 48, 102
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 1408
PspGI CCWGG 1 cut(s) 1408
PspN4I GGNNCC 2 cut(s) 271, 648
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 4 cut(s) 104, 507, 1330, 1424
RsaI GTAC 7 cut(s) 39, 260, 404, 516, 881, 1057, 1188
RsaNI GTAC 7 cut(s) 38, 259, 403, 515, 880, 1056, 1187
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 6 cut(s) 750, 875, 924, 1200, 1325, 1403
SatI GCNGC 4 cut(s) 891, 954, 1416, 1445
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 260, 1057
SchI GAGTC 2 cut(s) 48, 103
ScrFI CCNGG 2 cut(s) 109, 1410
SduI GDGCHC 2 cut(s) 286, 634
SfaNI GCATC 1 cut(s) 1122
SfcI CTRYAG 2 cut(s) 1288, 1428
SinI GGWCC 1 cut(s) 17
Sse9I AATT 6 cut(s) 42, 99, 250, 651, 768, 1005
SsiI CCGC 5 cut(s) 267, 308, 823, 1442, 1445
SspI AATATT 2 cut(s) 277, 819
SspMI CTAG 4 cut(s) 432, 491, 635, 726
SstI GAGCTC 1 cut(s) 634
StyD4I CCNGG 2 cut(s) 107, 1408
StyI CCWWGG 3 cut(s) 86, 301, 708
TaaI ACNGT 4 cut(s) 756, 1218, 1373, 1432
TaiI ACGT 1 cut(s) 1188
TaqI TCGA 5 cut(s) 52, 718, 900, 945, 1182
TaqII GACCGA 1 cut(s) 108
TasI AATT 6 cut(s) 42, 99, 250, 651, 768, 1005
TatI WGTACW 4 cut(s) 37, 258, 879, 1055
TauI GCSGC 1 cut(s) 1447
TfiI GAWTC 2 cut(s) 71, 413
Tru1I TTAA 6 cut(s) 750, 875, 924, 1200, 1325, 1403
Tru9I TTAA 6 cut(s) 750, 875, 924, 1200, 1325, 1403
TscAI CASTG 3 cut(s) 346, 943, 1348
TseFI GTSAC 3 cut(s) 120, 703, 1265
TseI GCWGC 3 cut(s) 890, 953, 1415
Tsp45I GTSAC 3 cut(s) 120, 703, 1265
TspDTI ATGAA 3 cut(s) 17, 582, 1101
TspRI CASTG 3 cut(s) 346, 943, 1348
Van91I CCANNNNNTGG 1 cut(s) 261
VneI GTGCAC 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 2 cut(s) 521, 1119
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 4 cut(s) 432, 491, 635, 726
ZrmI AGTACT 2 cut(s) 260, 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.