Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Reverse (-)

23469841 .. 23471776

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTGCTATCTAAAAGTACCCTTTCATTTTCTTCGTCTTCTTCTTATAATTCTTCTGTTACTTTGTTCTTCCGTGACACCGTTTTACTTGCCAAGGCTTGGAACATTTCGAAGAACAATTCACCGATACCACGATTCCAAAACCATCCCATCTTCTTCTGTTTCTTCTGGTTTCAGAAAGTTTCATTTCACCCAAAAGCTTGATCACTTCAACTACAAGCCTGAAAGCTACACCACATTTAAGCAAATGTATGCGATCAATGCTAAATACTGGGGTGGAGCAATCTCTGGTGCGCCAATCTTGGCATATCTCGGAGATGAAGGACCTTTGTCTTTGCCTTATAACTATAGCGATTTTCTCACTGATCACGCCCCTCGATTTAAGGCACTCCTAGTATACATGGAGCATCGGTTCTATGGCGAGTCAGTACCGTTTGGATTATCAACACATAAAGCTCTGAAAAATTCAAGTATCCGAGGTTATTTCAACTCAGCACAAGCCCTTGCAGATTATGCAGCAGTGCTTCTACATGTAAAGAAAACATATTCTGCTGAGACTAGTCCTATAATAGTGCTGGGAGGTTCTTATGGAGGAATGCTTGCATCATGGTTTCGGCTCAAGTATCCCCACATTGCGCATGGAGCTCTAGCTTCATCAGCTCCAATCCTTTACTTCGATAACATTATTCCACCGGAGAAGGGATACTATTCCGTCGTTACCAAAGATTTCAAATACGATATAGCTGGAGTTGATACTATCTGCAAAGCCATTGATGCAGCACCTATAAAGAGCGATATTCTTGACAAAATAATAGCAGGTATTGAGTATCAGATGACGGGAAGTAAACCATGCCATAAAATAGCTGCAGAAGACTATTCTTTCGAGGGATGGGCATGGCAGAGTTTTGCACGTGCATCGCGCGGGTCGGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

312

Amino Acids

34.95

Weight (kDa)

9.12

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	65 - 257	1.1e-41	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	47, 342
Acc16I	TGCGCA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	2 cut(s)	919, 921
AciI	CCGC	1 cut(s)	921
AcsI	RAATTY	1 cut(s)	463
AcvI	CACGTG	1 cut(s)	911
AfaI	GTAC	2 cut(s)	18, 429
AfiI	CCNNNNNNNGG	2 cut(s)	98, 698
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	211, 468, 487, 730
AhlI	ACTAGT	1 cut(s)	557
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	8 cut(s)	199, 228, 455, 644, 650, 659, 743, 863
AluI	AGCT	8 cut(s)	199, 228, 455, 644, 650, 659, 743, 863
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	548
ApeKI	GCWGC	3 cut(s)	515, 776, 863
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AspLEI	GCGC	3 cut(s)	295, 637, 921
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	113, 181
AsuII	TTCGAA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	646
BbrPI	CACGTG	1 cut(s)	911
BbsI	GAAGAC	2 cut(s)	29, 876
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	3 cut(s)	527, 788, 850
BccI	CCATC	3 cut(s)	152, 157, 882
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciVI	GTATCC	3 cut(s)	482, 633, 695
BclI	TGATCA	2 cut(s)	202, 364
BcoDI	GTCTC	1 cut(s)	548
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	392, 558, 647
BfmI	CTRYAG	2 cut(s)	346, 864
BfuAI	ACCTGC	1 cut(s)	806
BfuI	GTATCC	3 cut(s)	482, 633, 695
BisI	GCNGC	3 cut(s)	516, 777, 864
BlsI	GCNGC	3 cut(s)	517, 778, 865
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	4 cut(s)	415, 611, 763, 923
BmuI	ACTGGG	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	29, 876
BpmI	CTGGAG	1 cut(s)	765
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	92, 475
BsaWI	WCCGGW	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 698
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	92, 475
BseGI	GGATG	2 cut(s)	144, 893
BseLI	CCNNNNNNNGG	2 cut(s)	98, 698
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	504, 543
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	527, 788, 850
BseYI	CCCAGC	1 cut(s)	574
Bsh1236I	CGCG	2 cut(s)	919, 921
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	692
BslI	CCNNNNNNNGG	2 cut(s)	98, 698
BsmAI	GTCTC	1 cut(s)	548
BsmI	GAATGC	2 cut(s)	600, 935
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	3 cut(s)	202, 255, 364
BspACI	CCGC	1 cut(s)	921
BspCNI	CTCAG	2 cut(s)	503, 544
BspFNI	CGCG	2 cut(s)	919, 921
BspMAI	CTGCAG	1 cut(s)	868
BspMI	ACCTGC	1 cut(s)	806
BspT104I	TTCGAA	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	92, 475
BssMI	GATC	3 cut(s)	202, 255, 364
BssNAI	GTATAC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	92
Bst1107I	GTATAC	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	81, 432
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	490, 552
BstF5I	GGATG	2 cut(s)	144, 893
BstFNI	CGCG	2 cut(s)	919, 921
BstHHI	GCGC	3 cut(s)	295, 637, 921
BstKTI	GATC	3 cut(s)	205, 258, 367
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	202, 255, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 512, 641, 656, 773
BstNSI	RCATGY	1 cut(s)	533
BstPAI	GACNNNNGTC	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	346, 864
BstUI	CGCG	2 cut(s)	919, 921
BstV1I	GCAGC	3 cut(s)	527, 788, 850
BstV2I	GAAGAC	2 cut(s)	29, 876
BstZ17I	GTATAC	1 cut(s)	397
BsuI	GTATCC	3 cut(s)	482, 633, 695
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	144, 893
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	360, 525
BveI	ACCTGC	1 cut(s)	806
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	3 cut(s)	295, 637, 921
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	17, 428
CviAII	CATG	6 cut(s)	400, 530, 606, 638, 849, 894
CviQI	GTAC	2 cut(s)	17, 428
DdeI	CTNAG	2 cut(s)	490, 552
DpnI	GATC	3 cut(s)	204, 257, 366
DpnII	GATC	3 cut(s)	202, 255, 364
Ecl136II	GAGCTC	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	644
Eco72I	CACGTG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	6 cut(s)	403, 533, 609, 641, 852, 897
FatI	CATG	6 cut(s)	399, 529, 605, 637, 848, 893
FauI	CCCGC	1 cut(s)	914
FbaI	TGATCA	2 cut(s)	202, 364
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	516, 777, 864
FokI	GGATG	2 cut(s)	131, 900
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	3 cut(s)	516, 777, 864
FspBI	CTAG	3 cut(s)	392, 558, 647
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	3 cut(s)	294, 636, 920
GluI	GCNGC	3 cut(s)	516, 777, 864
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	765
HapII	CCGG	1 cut(s)	692
HhaI	GCGC	3 cut(s)	295, 637, 921
Hin1II	CATG	6 cut(s)	403, 533, 609, 641, 852, 897
Hin6I	GCGC	3 cut(s)	293, 635, 919
HinP1I	GCGC	3 cut(s)	293, 635, 919
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	134, 422
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	2 cut(s)	113, 181
Hpy166II	GTNNAC	2 cut(s)	397, 845
Hpy188I	TCNGA	6 cut(s)	176, 314, 459, 476, 831, 928
Hpy188III	TCNNGA	1 cut(s)	800
Hpy8I	GTNNAC	2 cut(s)	397, 845
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	2 cut(s)	314, 691
HpyCH4III	ACNGT	2 cut(s)	81, 432
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	8 cut(s)	506, 515, 602, 762, 776, 866, 908, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 512, 641, 656, 773
HpyF3I	CTNAG	2 cut(s)	490, 552
HpySE526I	ACGT	1 cut(s)	910
Hsp92II	CATG	6 cut(s)	403, 533, 609, 641, 852, 897
HspAI	GCGC	3 cut(s)	293, 635, 919
Ksp22I	TGATCA	2 cut(s)	202, 364
Kzo9I	GATC	3 cut(s)	202, 255, 364
LmnI	GCTCC	4 cut(s)	278, 403, 641, 664
LpnPI	CCDG	8 cut(s)	153, 234, 256, 273, 560, 705, 729, 801
Lsp1109I	GCAGC	3 cut(s)	527, 788, 850
LweI	GCATC	4 cut(s)	415, 611, 763, 923
MaeI	CTAG	3 cut(s)	392, 558, 647
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	3 cut(s)	57, 73, 715
MalI	GATC	3 cut(s)	204, 257, 366
MboI	GATC	3 cut(s)	202, 255, 364
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	3 cut(s)	48, 117, 463
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	906
MnlI	CCTC	5 cut(s)	384, 470, 572, 584, 877
MseI	TTAA	2 cut(s)	240, 381
MspI	CCGG	1 cut(s)	692
Mva1269I	GAATGC	2 cut(s)	600, 935
MvnI	CGCG	2 cut(s)	919, 921
MwoI	GCNNNNNNNGC	5 cut(s)	260, 512, 641, 656, 773
NdeII	GATC	3 cut(s)	202, 255, 364
NlaIII	CATG	6 cut(s)	403, 533, 609, 641, 852, 897
NmuCI	GTSAC	1 cut(s)	73
NsbI	TGCGCA	1 cut(s)	636
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	1 cut(s)	109
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	2 cut(s)	600, 935
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	517, 778, 865
PleI	GAGTC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	323
PscI	ACATGT	1 cut(s)	529
PshAI	GACNNNNGTC	1 cut(s)	328
PsiI	TTATAA	2 cut(s)	47, 342
Psp124BI	GAGCTC	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	911
PspFI	CCCAGC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	868
RsaI	GTAC	2 cut(s)	18, 429
RsaNI	GTAC	2 cut(s)	17, 428
SacI	GAGCTC	1 cut(s)	646
SaqAI	TTAA	2 cut(s)	240, 381
SatI	GCNGC	3 cut(s)	516, 777, 864
Sau3AI	GATC	3 cut(s)	202, 255, 364
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	4 cut(s)	415, 611, 763, 923
SfcI	CTRYAG	2 cut(s)	346, 864
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	3 cut(s)	48, 117, 463
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	3 cut(s)	392, 558, 647
SstI	GAGCTC	1 cut(s)	646
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	81, 432
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	4 cut(s)	109, 376, 675, 882
TasI	AATT	3 cut(s)	48, 117, 463
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	240, 381
Tru9I	TTAA	2 cut(s)	240, 381
TscAI	CASTG	2 cut(s)	367, 525
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	515, 776, 863
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	14, 173, 333, 642
TspGWI	ACGGA	2 cut(s)	61, 700
TspRI	CASTG	2 cut(s)	367, 525
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	3 cut(s)	392, 558, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.