MD03G1130100.v1.1

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
12772747 .. 12778850
6104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1130100.v1.1.491

Sequence Viewer

Length: 1518 bp
ATGAACTCATTTATATCTCTACTTCTATTCCTTCTACCAATCATCTCTCTATTTATCACAACCTCAGTTTCTGGTTCACCCTTGAAAATCCCAAGGCTGAGTCCTACTGGAGGAACATTTGTACATGGAAATTATTTTGCAAATGACCAACCAAAAGCTTTGTCTGCACTTGATCAAAATGATTTTGAAACATTTTACTACACCCAAACACTTGACCATTTCAACTTCAGGCCCGATAGCTTCACTACTTTTCAACAAAGATATTTGATCAACTCCAAGTACTGGGGTGGCTCCAATGTTAGTGCACCAATATTGGCTTACTTGGGCGCAGAAGAATCAATTGACACCGATCTTGCTAGTATCAGCTTTCTCAGTGAAAACGCCAATCAGTTCCAAGCTCTCCAGATATTCATTGAGCACCGGTACTATGGGAAATCAATCCCGTTTGGATCAAGGGCAGAAGCATTTAAAAATTCAAGCACTATTGGGTACTTCAATTCAGCCCAGGCAATAGCAGATTATGCAGAGATCCTTATACATGTAAAGAAGCAACTTCACGCTGAAGATTCTCCGGTGATTGTTATCGGTGGATCATACGGTGGAATGCTTGCTTCATGGTTTCGGCTCAAATATCCCCATGTCGCAGTGGGAGCTCTAGCATCGTCAGCACCAATTCTTTACTTTGATAACATTATCCCACCAGAAAAGGGATATTATTCCATTGTGACCAAGGATTTTCAAGAAGCGAGTGAGACTTGCTACCAAACAATAAAGAAATCATGGTCTGAAATTGATGAAATTGCCTCTAAGCATGGAGGCCTCTCAATTCTTAGCAAGAAGTTCCACACTTGCAGTTTGTTGAACAATTCTTCTGAGCTGAAGAACTACTTGCAGTCAGTCTATGCTCAGGCAGCTCAATACGATCGTCCACCAAGATATCCAGTTACTGTTGTCTGTGGAGGAATTGATGGAGCTTCTTCTGGAAATGATACTCTAAGCAAAATATTTGCAGGCCTTGTTGCATACAGAGGAAACAGGTCGTGCTATGTTAATCAACCCGGAAACCTATCTGAAACAGATATAGGGTGGAGATGGCAGACGTGTAGTGACATGGTGATACCCATAAGCATCAGCAACGACACCATGTTTCAACCTGACCTGTACGATCTGGAAGTCCACATCAAATCCTGCAAGGCAAAGTATGGTGTCCCTCCTCGACCACGTTGGGCCACTACGTACTTCGGAGGCCATGATATAAAACTAGCTCTCCACAGGTTTGCTAGTAACATCATTTTCTCCAATGGGCTAAGAGACCCATACAGTAGTGGCGGGGTGTTGGAGGACATATCACGCACTGTTGTTGCCGTCCATACAAAGAATGGATCTCATTGCTTGGATATACTTCGTGCAAACCACACTACTGATCCAGGCTGGTTGGTGGAGCAGCGAAAAACTGAAGTGCATATCATCAAAGGATGGTTGGTCAAGTACTATGCCGACCTTCACGCATTCAAATAA

Protein Analysis

506

Amino Acids

56.34

Weight (kDa)

6.96

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 69 - 484 5.2e-69 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 1 cut(s) 1329
AclWI GGATC 5 cut(s) 457, 523, 598, 1390, 1418
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 4 cut(s) 211, 582, 899, 1476
AfaI GTAC 7 cut(s) 123, 281, 425, 491, 1163, 1238, 1490
AfiI CCNNNNNNNGG 3 cut(s) 110, 282, 707
AflIII ACRYGT 2 cut(s) 538, 1100
AgeI ACCGGT 1 cut(s) 420
AjiI CACGTC 1 cut(s) 1101
AjnI CCWGG 2 cut(s) 504, 1426
AluBI AGCT 9 cut(s) 158, 240, 366, 398, 653, 877, 914, 974, 1265
AluI AGCT 9 cut(s) 158, 240, 366, 398, 653, 877, 914, 974, 1265
Alw21I GWGCWC 3 cut(s) 307, 420, 655
Alw26I GTCTC 2 cut(s) 746, 1305
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 5 cut(s) 457, 523, 598, 1390, 1418
AlwNI CAGNNNCTG 2 cut(s) 71, 947
AoxI GGCC 5 cut(s) 230, 817, 1012, 1227, 1246
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 911, 1444
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 231, 1227
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 3 cut(s) 69, 586, 1126
BaeGI GKGCMC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 655
Bbv12I GWGCWC 3 cut(s) 307, 420, 655
BbvI GCAGC 2 cut(s) 923, 1456
BccI CCATC 3 cut(s) 962, 1086, 1470
BceAI ACGGC 1 cut(s) 1349
BciT130I CCWGG 2 cut(s) 506, 1428
BclI TGATCA 2 cut(s) 172, 267
BcnI CCSGG 1 cut(s) 1059
BcoDI GTCTC 2 cut(s) 746, 1305
BfaI CTAG 4 cut(s) 357, 656, 1262, 1281
BisI GCNGC 2 cut(s) 912, 1445
BlsI GCNGC 2 cut(s) 913, 1446
BmcAI AGTACT 2 cut(s) 281, 1490
Bme1390I CCNGG 3 cut(s) 506, 1059, 1428
BmgBI CACGTC 1 cut(s) 1101
BmgT120I GGNCC 2 cut(s) 231, 1227
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 3 cut(s) 506, 1059, 1428
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 668, 1137
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 2 cut(s) 129, 386
Bpu10I CCTNAGC 1 cut(s) 906
BpuMI CCSGG 1 cut(s) 1059
BsaAI YACGTR 1 cut(s) 1236
BsaBI GATNNNNATC 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 1305
BsaJI CCNNGG 3 cut(s) 92, 504, 729
BsaWI WCCGGW 2 cut(s) 420, 571
BsaXI ACNNNNNCTCC 2 cut(s) 1251, 1281
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 282, 707
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 3 cut(s) 112, 287, 941
Bse3DI GCAATG 1 cut(s) 1387
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 2 cut(s) 506, 1428
BseDI CCNNGG 3 cut(s) 92, 504, 729
BseGI GGATG 1 cut(s) 1481
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 3 cut(s) 110, 282, 707
BseMI GCAATG 1 cut(s) 1387
BseMII CTCAG 5 cut(s) 78, 89, 385, 864, 920
BseNI ACTGG 3 cut(s) 112, 287, 941
BseRI GAGGAG 1 cut(s) 1203
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 2 cut(s) 923, 1456
BsgI GTGCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 925
BshFI GGCC 5 cut(s) 232, 819, 1014, 1229, 1248
BshTI ACCGGT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 925
BsiHKAI GWGCWC 3 cut(s) 307, 420, 655
BsiSI CCGG 3 cut(s) 421, 572, 1059
BslFI GGGAC 1 cut(s) 1193
BslI CCNNNNNNNGG 3 cut(s) 110, 282, 707
BsmAI GTCTC 2 cut(s) 746, 1305
BsmFI GGGAC 1 cut(s) 1193
BsmI GAATGC 2 cut(s) 609, 1508
BsnI GGCC 5 cut(s) 232, 819, 1014, 1229, 1248
Bso31I GGTCTC 1 cut(s) 1305
Bsp1286I GDGCHC 3 cut(s) 307, 420, 655
Bsp1407I TGTACA 1 cut(s) 121
BspACI CCGC 1 cut(s) 1329
BspANI GGCC 5 cut(s) 232, 819, 1014, 1229, 1248
BspCNI CTCAG 5 cut(s) 77, 90, 384, 865, 919
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 5 cut(s) 457, 523, 598, 1390, 1418
BspTNI GGTCTC 1 cut(s) 1305
BsrDI GCAATG 1 cut(s) 1387
BsrFI RCCGGY 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 112, 287, 941
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 3 cut(s) 92, 504, 729
BssT1I CCWWGG 2 cut(s) 92, 729
Bst2UI CCWGG 2 cut(s) 506, 1428
Bst4CI ACNGT 4 cut(s) 599, 949, 1322, 1357
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 1236
BstC8I GCNNGC 2 cut(s) 609, 1012
BstDEI CTNAG 9 cut(s) 64, 98, 371, 807, 830, 873, 906, 995, 1307
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 1481
BstHHI GCGC 1 cut(s) 329
BstMAI GTCTC 2 cut(s) 746, 1305
BstMCI CGRYCG 1 cut(s) 925
BstMWI GCNNNNNNNGC 5 cut(s) 164, 521, 650, 665, 911
BstNI CCWGG 2 cut(s) 506, 1428
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 504, 1057, 1426
BstSLI GKGCMC 1 cut(s) 307
BstSNI TACGTA 1 cut(s) 1236
BstV1I GCAGC 2 cut(s) 923, 1456
BstX2I RGATCY 2 cut(s) 528, 1382
BstYI RGATCY 2 cut(s) 528, 1382
BsuRI GGCC 5 cut(s) 232, 819, 1014, 1229, 1248
BtrI CACGTC 1 cut(s) 1101
BtsCI GGATG 1 cut(s) 1481
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 3 cut(s) 379, 651, 1353
Cac8I GCNNGC 2 cut(s) 609, 1012
CaiI CAGNNNCTG 2 cut(s) 71, 947
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 231, 1227
Csp6I GTAC 7 cut(s) 122, 280, 424, 490, 1162, 1237, 1489
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 9 cut(s) 125, 539, 615, 638, 780, 812, 1111, 1144, 1250
CviQI GTAC 7 cut(s) 122, 280, 424, 490, 1162, 1237, 1489
DdeI CTNAG 9 cut(s) 64, 98, 371, 807, 830, 873, 906, 995, 1307
DraI TTTAAA 1 cut(s) 469
Ecl136II GAGCTC 1 cut(s) 653
Eco105I TACGTA 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 92, 729
Eco147I AGGCCT 2 cut(s) 819, 1014
Eco24I GRGCYC 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 1305
Eco32I GATATC 1 cut(s) 938
Eco53kI GAGCTC 1 cut(s) 653
Eco57I CTGAAG 4 cut(s) 211, 582, 899, 1476
EcoICRI GAGCTC 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 504, 1426
EcoRV GATATC 1 cut(s) 938
EcoT14I CCWWGG 2 cut(s) 92, 729
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 92, 729
FaeI CATG 9 cut(s) 128, 542, 618, 641, 783, 815, 1114, 1147, 1253
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 1 cut(s) 1193
FatI CATG 9 cut(s) 124, 538, 614, 637, 779, 811, 1110, 1143, 1249
FauI CCCGC 1 cut(s) 1322
FbaI TGATCA 2 cut(s) 172, 267
Fnu4HI GCNGC 2 cut(s) 912, 1445
FokI GGATG 1 cut(s) 1488
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 2 cut(s) 912, 1445
FspBI CTAG 4 cut(s) 357, 656, 1262, 1281
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 912, 1445
GsuI CTGGAG 2 cut(s) 129, 386
HaeIII GGCC 5 cut(s) 232, 819, 1014, 1229, 1248
HapII CCGG 3 cut(s) 421, 572, 1059
HhaI GCGC 1 cut(s) 329
Hin1II CATG 9 cut(s) 128, 542, 618, 641, 783, 815, 1114, 1147, 1253
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 3 cut(s) 100, 335, 566
HpaII CCGG 3 cut(s) 421, 572, 1059
HphI GGTGA 3 cut(s) 69, 586, 1126
Hpy166II GTNNAC 4 cut(s) 77, 305, 929, 1177
Hpy188I TCNGA 4 cut(s) 787, 874, 1072, 1244
Hpy188III TCNNGA 4 cut(s) 403, 740, 981, 1169
Hpy8I GTNNAC 4 cut(s) 77, 305, 929, 1177
HpyAV CCTTC 2 cut(s) 41, 1511
HpyCH4III ACNGT 4 cut(s) 599, 949, 1322, 1357
HpyCH4IV ACGT 3 cut(s) 1100, 1222, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 521, 650, 665, 911
HpyF3I CTNAG 9 cut(s) 64, 98, 371, 807, 830, 873, 906, 995, 1307
HpySE526I ACGT 3 cut(s) 1100, 1222, 1235
Hsp92II CATG 9 cut(s) 128, 542, 618, 641, 783, 815, 1114, 1147, 1253
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 172, 267
LmnI GCTCC 4 cut(s) 296, 650, 971, 1441
Lsp1109I GCAGC 2 cut(s) 923, 1456
LweI GCATC 2 cut(s) 668, 1137
MaeI CTAG 4 cut(s) 357, 656, 1262, 1281
MaeII ACGT 3 cut(s) 1100, 1222, 1235
MaeIII GTNAC 4 cut(s) 724, 943, 1106, 1283
MboII GAAGA 5 cut(s) 344, 575, 861, 892, 969
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 528, 1382
MhlI GDGCHC 3 cut(s) 307, 420, 655
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 1317
MseI TTAA 2 cut(s) 468, 1050
MspI CCGG 3 cut(s) 421, 572, 1059
MspR9I CCNGG 3 cut(s) 506, 1059, 1428
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 609, 1508
MvaI CCWGG 2 cut(s) 506, 1428
MwoI GCNNNNNNNGC 5 cut(s) 164, 521, 650, 665, 911
NciI CCSGG 1 cut(s) 1059
NlaIII CATG 9 cut(s) 128, 542, 618, 641, 783, 815, 1114, 1147, 1253
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 724, 1106
NspI RCATGY 1 cut(s) 542
PceI AGGCCT 2 cut(s) 819, 1014
PciI ACATGT 1 cut(s) 538
PctI GAATGC 2 cut(s) 609, 1508
PfeI GAWTC 2 cut(s) 335, 566
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 2 cut(s) 913, 1446
Ple19I CGATCG 1 cut(s) 925
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 1236
PscI ACATGT 1 cut(s) 538
Psp124BI GAGCTC 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 504, 1426
PspGI CCWGG 2 cut(s) 504, 1426
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 231, 1227
PstNI CAGNNNCTG 2 cut(s) 71, 947
PsuI RGATCY 2 cut(s) 528, 1382
PvuI CGATCG 1 cut(s) 925
RsaI GTAC 7 cut(s) 123, 281, 425, 491, 1163, 1238, 1490
RsaNI GTAC 7 cut(s) 122, 280, 424, 490, 1162, 1237, 1489
SacI GAGCTC 1 cut(s) 655
SaqAI TTAA 2 cut(s) 468, 1050
SatI GCNGC 2 cut(s) 912, 1445
Sau96I GGNCC 2 cut(s) 231, 1227
ScaI AGTACT 2 cut(s) 281, 1490
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 506, 1059, 1428
SduI GDGCHC 3 cut(s) 307, 420, 655
SfaNI GCATC 2 cut(s) 668, 1137
SnaBI TACGTA 1 cut(s) 1236
SseBI AGGCCT 2 cut(s) 819, 1014
SsiI CCGC 1 cut(s) 1329
SspI AATATT 2 cut(s) 312, 1005
SspMI CTAG 4 cut(s) 357, 656, 1262, 1281
SstI GAGCTC 1 cut(s) 655
StuI AGGCCT 2 cut(s) 819, 1014
StyD4I CCNGG 3 cut(s) 504, 1057, 1426
StyI CCWWGG 2 cut(s) 92, 729
TaaI ACNGT 4 cut(s) 599, 949, 1322, 1357
TaiI ACGT 3 cut(s) 1103, 1225, 1238
TaqI TCGA 1 cut(s) 1216
TatI WGTACW 3 cut(s) 121, 279, 1488
TfiI GAWTC 2 cut(s) 335, 566
Tru1I TTAA 2 cut(s) 468, 1050
Tru9I TTAA 2 cut(s) 468, 1050
TscAI CASTG 3 cut(s) 379, 651, 1360
TseFI GTSAC 2 cut(s) 724, 1106
TseI GCWGC 2 cut(s) 911, 1444
Tsp45I GTSAC 2 cut(s) 724, 1106
TspDTI ATGAA 4 cut(s) 17, 400, 603, 810
TspRI CASTG 3 cut(s) 379, 651, 1360
Van91I CCANNNNNTGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 1 cut(s) 472
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 1376
XspI CTAG 4 cut(s) 357, 656, 1262, 1281
ZrmI AGTACT 2 cut(s) 281, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.