RLG00000029170

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
34003587 .. 34008308
4722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029170

Sequence Viewer

Length: 1356 bp
ATGAGAGCCAAACAATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTGAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAGGCCAACCCAGTGAAGCTTCATCATCTGCATTTGATCCCAAAGATCTTCAGACACTTTACTACAACCAAACAATTGACCATTTCAACTTTAGGTATGATAGCTTCAATACCTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCTATACTCGCTTACTTAGGCGCAGAAGAATCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCACTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAACGGAAGTGGCATTTAAAAATGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAGCTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGTCTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCGTCAGCTCCAATTCTATACTTTGATGACATAGTTCCTCCAGAAACAGGATACTACTCCATTGAAGCTAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATAATATTGCTTCCAAGCCTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCATACCGTTGACCACGTCGTCTGAGCTCAAGGACTACTTGGACTCGATGTATGCTAGGGCAGCTCAATACGATCGTCCACCGAATTATCTGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGATGATATTTTGACAAAAATATTTGCAGGTGTGACATGTAGTGACATGGTGATTCCCATAAGCATGAACAACGACACCATGTTTCCACCATACAAATTTGATCTCGATGAATTTATCAATAACTGCAAGGCTGGCGTTTCTCCCAGGCCTAATTGGGTGACTACCTACTTTGGAGGCCATGACATAAAACTAAGTCTGTCCAGGTTTGTTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCCGCGTTTTGGAAGACATATCAGACAGTGTGGTAGCTGTCCATACAAAGAATGGGTCTCACTGCTTGGATATTTTCACATCAAACCATGCCAATCCAGACTGGTTGGTCAATCAGCGGAAAAGTGAGGTTGTTATCATCAAAGGATGGATGGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

452

Amino Acids

50.43

Weight (kDa)

5.8

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 64 - 307 1.2e-40 Serine carboxypeptidase S28
Peptidase_S28 PF05577 316 - 430 2.3e-08 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 929
AasI GACNNNNNNGTC 2 cut(s) 796, 1274
Acc36I ACCTGC 1 cut(s) 929
AccB7I CCANNNNNTGG 1 cut(s) 267
AccII CGCG 1 cut(s) 1173
AciI CCGC 3 cut(s) 885, 1171, 1285
AclWI GGATC 2 cut(s) 152, 442
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 5 cut(s) 66, 474, 767, 1007, 1022
AcuI CTGAAG 2 cut(s) 155, 762
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 5 cut(s) 89, 267, 347, 653, 1177
AflIII ACRYGT 2 cut(s) 484, 947
AgeI ACCGGT 1 cut(s) 405
AgsI TTSAA 7 cut(s) 64, 208, 229, 239, 380, 671, 1343
AjiI CACGTC 2 cut(s) 586, 795
AjnI CCWGG 2 cut(s) 1055, 1112
Alw21I GWGCWC 4 cut(s) 292, 405, 601, 807
Alw26I GTCTC 3 cut(s) 674, 1146, 1230
Alw44I GTGCAC 1 cut(s) 288
AlwI GGATC 2 cut(s) 152, 442
AoxI GGCC 6 cut(s) 124, 603, 745, 1058, 1087, 1168
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 496, 839
ApoI RAATTY 5 cut(s) 66, 474, 767, 1007, 1022
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
AsiGI ACCGGT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 973, 1081
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 2 cut(s) 601, 807
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbsI GAAGAC 1 cut(s) 1188
Bbv12I GWGCWC 4 cut(s) 292, 405, 601, 807
BbvI GCAGC 2 cut(s) 508, 851
BccI CCATC 3 cut(s) 890, 1308, 1312
BciT130I CCWGG 2 cut(s) 1057, 1114
BciVI GTATCC 2 cut(s) 588, 650
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 674, 1146, 1230
BfaI CTAG 2 cut(s) 675, 834
BfmI CTRYAG 2 cut(s) 876, 909
BfuAI ACCTGC 1 cut(s) 929
BfuI GTATCC 2 cut(s) 588, 650
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 497, 840, 1171
BlsI GCNGC 3 cut(s) 498, 841, 1172
Bme1390I CCNGG 2 cut(s) 1057, 1114
BmgBI CACGTC 2 cut(s) 586, 795
BmiI GGNNCC 2 cut(s) 277, 353
BmrFI CCNGG 2 cut(s) 1057, 1114
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 1188
BpmI CTGGAG 3 cut(s) 108, 371, 630
BpuEI CTTGAG 2 cut(s) 736, 791
BsaI GGTCTC 2 cut(s) 1146, 1230
BsaJI CCNNGG 2 cut(s) 71, 1055
BsaWI WCCGGW 2 cut(s) 405, 517
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 267, 347, 653, 1177
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 3 cut(s) 91, 132, 1274
BseBI CCWGG 2 cut(s) 1057, 1114
BseDI CCNNGG 2 cut(s) 71, 1055
BseGI GGATG 2 cut(s) 1319, 1323
BseLI CCNNNNNNNGG 5 cut(s) 89, 267, 347, 653, 1177
BseMII CTCAG 3 cut(s) 66, 68, 792
BseNI ACTGG 3 cut(s) 91, 132, 1274
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 508, 851
Bsh1236I CGCG 1 cut(s) 1173
Bsh1285I CGRYCG 1 cut(s) 853
BshFI GGCC 6 cut(s) 126, 605, 747, 1060, 1089, 1170
BshTI ACCGGT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 853
BsiHKAI GWGCWC 4 cut(s) 292, 405, 601, 807
BsiSI CCGG 2 cut(s) 406, 518
BslI CCNNNNNNNGG 5 cut(s) 89, 267, 347, 653, 1177
BsmAI GTCTC 3 cut(s) 674, 1146, 1230
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 6 cut(s) 126, 605, 747, 1060, 1089, 1170
Bso31I GGTCTC 2 cut(s) 1146, 1230
Bsp1286I GDGCHC 4 cut(s) 292, 405, 601, 807
Bsp143I GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
BspACI CCGC 3 cut(s) 885, 1171, 1285
BspANI GGCC 6 cut(s) 126, 605, 747, 1060, 1089, 1170
BspCNI CTCAG 3 cut(s) 65, 69, 793
BspFNI CGCG 1 cut(s) 1173
BspLI GGNNCC 2 cut(s) 277, 353
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 2 cut(s) 152, 442
BspTNI GGTCTC 2 cut(s) 1146, 1230
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 3 cut(s) 91, 132, 1274
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 71, 1055
BssMI GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 1057, 1114
Bst4CI ACNGT 4 cut(s) 786, 877, 1163, 1196
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 555, 1045
BstDEI CTNAG 7 cut(s) 52, 77, 307, 758, 801, 1103, 1148
BstF5I GGATG 2 cut(s) 1319, 1323
BstFNI CGCG 1 cut(s) 1173
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 6 cut(s) 160, 169, 255, 437, 853, 1015
BstMAI GTCTC 3 cut(s) 674, 1146, 1230
BstMBI GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
BstMCI CGRYCG 1 cut(s) 853
BstMWI GCNNNNNNNGC 5 cut(s) 467, 596, 611, 839, 1044
BstNI CCWGG 2 cut(s) 1057, 1114
BstNSI RCATGY 3 cut(s) 488, 506, 951
BstSCI CCNGG 2 cut(s) 1055, 1112
BstSFI CTRYAG 2 cut(s) 876, 909
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 1 cut(s) 1173
BstV1I GCAGC 2 cut(s) 508, 851
BstV2I GAAGAC 1 cut(s) 1188
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 2 cut(s) 588, 650
BsuRI GGCC 6 cut(s) 126, 605, 747, 1060, 1089, 1170
BtrI CACGTC 2 cut(s) 586, 795
BtsCI GGATG 2 cut(s) 1319, 1323
BtsI GCAGTG 1 cut(s) 1228
BtsIMutI CAGTG 4 cut(s) 139, 292, 1201, 1228
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 2 cut(s) 555, 1045
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 405
Csp6I GTAC 1 cut(s) 409
CspAI ACCGGT 1 cut(s) 405
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 7 cut(s) 52, 77, 307, 758, 801, 1103, 1148
DpnI GATC 6 cut(s) 159, 168, 254, 436, 852, 1014
DpnII GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
DraI TTTAAA 1 cut(s) 454
DrdI GACNNNNNNGTC 2 cut(s) 796, 1274
DseDI GACNNNNNNGTC 2 cut(s) 796, 1274
EaeI YGGCCR 1 cut(s) 1168
Ecl136II GAGCTC 2 cut(s) 599, 805
Eco130I CCWWGG 1 cut(s) 71
Eco147I AGGCCT 2 cut(s) 747, 1060
Eco24I GRGCYC 2 cut(s) 601, 807
Eco31I GGTCTC 2 cut(s) 1146, 1230
Eco53kI GAGCTC 2 cut(s) 599, 805
Eco57I CTGAAG 2 cut(s) 155, 762
EcoICRI GAGCTC 2 cut(s) 599, 805
EcoRII CCWGG 2 cut(s) 1055, 1112
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 2 cut(s) 601, 807
ErhI CCWWGG 1 cut(s) 71
FalI AAGNNNNNCTT 4 cut(s) 800, 832, 1141, 1173
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 497, 840, 1171
FokI GGATG 2 cut(s) 1326, 1330
FriOI GRGCYC 2 cut(s) 601, 807
Fsp4HI GCNGC 3 cut(s) 497, 840, 1171
FspBI CTAG 2 cut(s) 675, 834
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 497, 840, 1171
GsuI CTGGAG 3 cut(s) 108, 371, 630
HaeIII GGCC 6 cut(s) 126, 605, 747, 1060, 1089, 1170
HapII CCGG 2 cut(s) 406, 518
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 5 cut(s) 79, 320, 419, 821, 964
HpaII CCGG 2 cut(s) 406, 518
HphI GGTGA 2 cut(s) 973, 1081
Hpy166II GTNNAC 3 cut(s) 290, 789, 857
Hpy188I TCNGA 6 cut(s) 174, 434, 715, 773, 802, 1192
Hpy188III TCNNGA 4 cut(s) 388, 647, 1016, 1265
Hpy8I GTNNAC 3 cut(s) 290, 789, 857
Hpy99I CGWCG 2 cut(s) 590, 799
HpyAV CCTTC 3 cut(s) 29, 737, 1349
HpyCH4III ACNGT 4 cut(s) 786, 877, 1163, 1196
HpyCH4IV ACGT 2 cut(s) 585, 794
HpyCH4V TGCA 7 cut(s) 152, 290, 461, 470, 780, 938, 1038
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 596, 611, 839, 1044
HpyF3I CTNAG 7 cut(s) 52, 77, 307, 758, 801, 1103, 1148
HpySE526I ACGT 2 cut(s) 585, 794
HspAI GCGC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
LmnI GCTCC 4 cut(s) 281, 596, 619, 899
Lsp1109I GCAGC 2 cut(s) 508, 851
MaeI CTAG 2 cut(s) 675, 834
MaeII ACGT 2 cut(s) 585, 794
MaeIII GTNAC 6 cut(s) 43, 107, 871, 943, 953, 1069
MalI GATC 6 cut(s) 159, 168, 254, 436, 852, 1014
MboI GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
MboII GAAGA 3 cut(s) 161, 329, 1193
MfeI CAATTG 2 cut(s) 195, 324
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 4 cut(s) 292, 405, 601, 807
MlyI GAGTC 2 cut(s) 88, 815
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 7 cut(s) 61, 83, 616, 654, 758, 1079, 1288
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 2 cut(s) 270, 974
MspA1I CMGCKG 1 cut(s) 1285
MspI CCGG 2 cut(s) 406, 518
MspR9I CCNGG 2 cut(s) 1057, 1114
MunI CAATTG 2 cut(s) 195, 324
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 2 cut(s) 1057, 1114
MvnI CGCG 1 cut(s) 1173
MwoI GCNNNNNNNGC 5 cut(s) 467, 596, 611, 839, 1044
NdeI CATATG 1 cut(s) 541
NdeII GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
NlaIV GGNNCC 2 cut(s) 277, 353
NmuCI GTSAC 4 cut(s) 43, 943, 953, 1069
NspI RCATGY 3 cut(s) 488, 506, 951
PaqCI CACCTGC 1 cut(s) 929
PceI AGGCCT 2 cut(s) 747, 1060
PciI ACATGT 2 cut(s) 484, 947
PctI GAATGC 1 cut(s) 555
PfeI GAWTC 3 cut(s) 320, 419, 964
PflFI GACNNNGTC 1 cut(s) 793
PflMI CCANNNNNTGG 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 405
PkrI GCNGC 3 cut(s) 498, 841, 1172
Ple19I CGATCG 1 cut(s) 853
PleI GAGTC 2 cut(s) 87, 815
PpsI GAGTC 2 cut(s) 87, 815
PscI ACATGT 2 cut(s) 484, 947
Psp124BI GAGCTC 2 cut(s) 601, 807
Psp6I CCWGG 2 cut(s) 1055, 1112
PspGI CCWGG 2 cut(s) 1055, 1112
PspN4I GGNNCC 2 cut(s) 277, 353
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 793
PvuI CGATCG 1 cut(s) 853
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 270, 974
SacI GAGCTC 2 cut(s) 601, 807
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 497, 840, 1171
Sau3AI GATC 6 cut(s) 157, 166, 252, 434, 850, 1012
SchI GAGTC 2 cut(s) 88, 815
ScrFI CCNGG 2 cut(s) 1057, 1114
SduI GDGCHC 4 cut(s) 292, 405, 601, 807
SfcI CTRYAG 2 cut(s) 876, 909
SmiMI CAYNNNNRTG 2 cut(s) 270, 974
SmlI CTYRAG 2 cut(s) 751, 806
SmoI CTYRAG 2 cut(s) 751, 806
SseBI AGGCCT 2 cut(s) 747, 1060
SsiI CCGC 3 cut(s) 885, 1171, 1285
SspI AATATT 2 cut(s) 727, 933
SspMI CTAG 2 cut(s) 675, 834
SstI GAGCTC 2 cut(s) 601, 807
StuI AGGCCT 2 cut(s) 747, 1060
StyD4I CCNGG 2 cut(s) 1055, 1112
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 4 cut(s) 786, 877, 1163, 1196
TaiI ACGT 2 cut(s) 588, 797
TaqI TCGA 2 cut(s) 824, 1017
TauI GCSGC 1 cut(s) 1173
TfiI GAWTC 3 cut(s) 320, 419, 964
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 4 cut(s) 139, 292, 1201, 1235
TseFI GTSAC 4 cut(s) 43, 943, 953, 1069
TseI GCWGC 2 cut(s) 496, 839
Tsp45I GTSAC 4 cut(s) 43, 943, 953, 1069
TspDTI ATGAA 5 cut(s) 132, 549, 894, 992, 1035
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 4 cut(s) 139, 292, 1201, 1235
Tth111I GACNNNGTC 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 288
XapI RAATTY 5 cut(s) 66, 474, 767, 1007, 1022
XceI RCATGY 3 cut(s) 488, 506, 951
XcmI CCANNNNNNNNNTGG 2 cut(s) 590, 1217
XspI CTAG 2 cut(s) 675, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.