Rroxscaffold_4G00313170

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
36414986 .. 36418018
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313170.1

Sequence Viewer

Length: 1362 bp
ATGAAGCAACTCACATTCTCACTCCAATCATCCCTTCTACTAATAGCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACACGGTAACTATTGGACACAAGGCCGACCCAGCGAAGCTTCATCATCTGCATTTGATCCGAAAGATCTTCAGACATTTTACTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCTATACTCGCTTACTTAGGCGCAGAAGAATCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAACGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATATAAAGAAGCAGCTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGTCTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTTGATGGCATAGTACCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTAGAGAAGCTAGTGAGACTTGTTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATATTATTGCTTCTAAGCCTGGAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCACGTCGTCTGAGCTCAAGGACTACTTGGACTCGATGTATGCTAGGGCAGCTCAATACGATCGTCCACCGAATTATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCAGTCATGCTATGTCAACCAGCCCAGAAATGTAACAGAAAGACACGTGGGGTGGGCCTGGCAGGACATAAAACTGAGTCTCTCCAGGTTTGCTAGCAACATCATTTTCTCTAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAAACAGTGTGGTGGCTGTCCATACAAAGAATGGGTCTCACTGCTTGGATATTTTCACCTCAAACCATGCCGATCCAAACTGGTTGGTCAATCAGCGGAAAAGTGAGGCCAGAATCATCAAAGGATGGATGGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

453

Amino Acids

50.5

Weight (kDa)

6.89

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 69 - 357 1.4e-51 Serine carboxypeptidase S28
Peptidase_S28 PF05577 376 - 432 6.5e-09 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1001
AasI GACNNNNNNGTC 1 cut(s) 868
Acc36I ACCTGC 1 cut(s) 1001
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 3 cut(s) 957, 1176, 1291
AclWI GGATC 3 cut(s) 167, 457, 1262
AcsI RAATTY 3 cut(s) 81, 528, 839
AcuI CTGAAG 1 cut(s) 170
AcvI CACGTG 1 cut(s) 1081
AfaI GTAC 2 cut(s) 425, 696
AfiI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
AflIII ACRYGT 1 cut(s) 1078
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 6 cut(s) 223, 244, 254, 395, 496, 1349
AjiI CACGTC 2 cut(s) 640, 867
AjnI CCWGG 3 cut(s) 811, 1091, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
Alw21I GWGCWC 4 cut(s) 307, 420, 655, 879
Alw26I GTCTC 4 cut(s) 746, 1118, 1152, 1236
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 3 cut(s) 167, 457, 1262
AoxI GGCC 5 cut(s) 139, 657, 817, 1089, 1302
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 550, 911
ApoI RAATTY 3 cut(s) 81, 528, 839
ArsI GACNNNNNNTTYG 2 cut(s) 1214, 1246
AsiGI ACCGGT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 1089
AsuHPI GGTGA 2 cut(s) 718, 1243
AsuNHI GCTAGC 1 cut(s) 1127
BaeGI GKGCMC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 655, 879
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbrPI CACGTG 1 cut(s) 1081
BbsI GAAGAC 1 cut(s) 1194
Bbv12I GWGCWC 4 cut(s) 307, 420, 655, 879
BbvI GCAGC 2 cut(s) 562, 923
BccI CCATC 4 cut(s) 680, 962, 1314, 1318
BciT130I CCWGG 3 cut(s) 813, 1093, 1120
BciVI GTATCC 3 cut(s) 482, 642, 704
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 4 cut(s) 746, 1118, 1152, 1236
BfaI CTAG 3 cut(s) 747, 906, 1128
BfmI CTRYAG 3 cut(s) 510, 948, 981
BfuAI ACCTGC 1 cut(s) 1001
BfuI GTATCC 3 cut(s) 482, 642, 704
BglII AGATCT 1 cut(s) 181
BisI GCNGC 3 cut(s) 551, 912, 1177
BlsI GCNGC 3 cut(s) 552, 913, 1178
Bme1390I CCNGG 3 cut(s) 813, 1093, 1120
BmgBI CACGTC 2 cut(s) 640, 867
BmgT120I GGNCC 1 cut(s) 1089
BmiI GGNNCC 2 cut(s) 292, 368
BmrFI CCNGG 3 cut(s) 813, 1093, 1120
BmtI GCTAGC 1 cut(s) 1131
BpiI GAAGAC 1 cut(s) 1194
BpmI CTGGAG 5 cut(s) 123, 386, 684, 834, 1102
BpuEI CTTGAG 2 cut(s) 808, 863
BsaAI YACGTR 1 cut(s) 1081
BsaI GGTCTC 2 cut(s) 1152, 1236
BsaJI CCNNGG 2 cut(s) 86, 729
BsaWI WCCGGW 4 cut(s) 420, 571, 940, 1028
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 3 cut(s) 106, 1036, 1280
BseBI CCWGG 3 cut(s) 813, 1093, 1120
BseDI CCNNGG 2 cut(s) 86, 729
BseGI GGATG 3 cut(s) 29, 1325, 1329
BseLI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
BseMII CTCAG 5 cut(s) 81, 83, 513, 864, 1100
BseNI ACTGG 3 cut(s) 106, 1036, 1280
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 2 cut(s) 562, 923
BseYI CCCAGC 1 cut(s) 146
Bsh1285I CGRYCG 1 cut(s) 925
BshFI GGCC 5 cut(s) 141, 659, 819, 1091, 1304
BshTI ACCGGT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 925
BsiHKAI GWGCWC 4 cut(s) 307, 420, 655, 879
BsiSI CCGG 4 cut(s) 421, 572, 941, 1029
BslI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
BsmAI GTCTC 4 cut(s) 746, 1118, 1152, 1236
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 5 cut(s) 141, 659, 819, 1091, 1304
Bso31I GGTCTC 2 cut(s) 1152, 1236
Bsp1286I GDGCHC 4 cut(s) 307, 420, 655, 879
Bsp143I GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
BspACI CCGC 3 cut(s) 957, 1176, 1291
BspANI GGCC 5 cut(s) 141, 659, 819, 1091, 1304
BspCNI CTCAG 5 cut(s) 80, 84, 512, 865, 1101
BspLI GGNNCC 2 cut(s) 292, 368
BspMI ACCTGC 1 cut(s) 1001
BspOI GCTAGC 1 cut(s) 1131
BspPI GGATC 3 cut(s) 167, 457, 1262
BspTNI GGTCTC 2 cut(s) 1152, 1236
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 3 cut(s) 106, 1036, 1280
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 86, 729
BssMI GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
BssT1I CCWWGG 2 cut(s) 86, 729
Bst2UI CCWGG 3 cut(s) 813, 1093, 1120
Bst4CI ACNGT 5 cut(s) 122, 858, 949, 1169, 1202
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 1081
BstC8I GCNNGC 3 cut(s) 478, 609, 1129
BstDEI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1109, 1154
BstF5I GGATG 3 cut(s) 29, 1325, 1329
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 6 cut(s) 175, 184, 270, 452, 925, 1270
BstMAI GTCTC 4 cut(s) 746, 1118, 1152, 1236
BstMBI GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
BstMCI CGRYCG 1 cut(s) 925
BstMWI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
BstNI CCWGG 3 cut(s) 813, 1093, 1120
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 811, 1091, 1118
BstSFI CTRYAG 3 cut(s) 510, 948, 981
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 562, 923
BstV2I GAAGAC 1 cut(s) 1194
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 3 cut(s) 482, 642, 704
BsuRI GGCC 5 cut(s) 141, 659, 819, 1091, 1304
BtrI CACGTC 2 cut(s) 640, 867
BtsCI GGATG 3 cut(s) 29, 1325, 1329
BtsI GCAGTG 1 cut(s) 1234
BtsIMutI CAGTG 3 cut(s) 307, 1207, 1234
BveI ACCTGC 1 cut(s) 1001
Cac8I GCNNGC 3 cut(s) 478, 609, 1129
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 1089
Csp6I GTAC 2 cut(s) 424, 695
CspAI ACCGGT 1 cut(s) 420
CspCI CAANNNNNGTGG 4 cut(s) 441, 476, 1185, 1220
CviAII CATG 4 cut(s) 557, 615, 1041, 1262
CviQI GTAC 2 cut(s) 424, 695
DdeI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1109, 1154
DpnI GATC 6 cut(s) 174, 183, 269, 451, 924, 1269
DpnII GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
DraI TTTAAA 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 868
Ecl136II GAGCTC 2 cut(s) 653, 877
Eco130I CCWWGG 2 cut(s) 86, 729
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 2 cut(s) 655, 879
Eco31I GGTCTC 2 cut(s) 1152, 1236
Eco53kI GAGCTC 2 cut(s) 653, 877
Eco57I CTGAAG 1 cut(s) 170
Eco72I CACGTG 1 cut(s) 1081
EcoICRI GAGCTC 2 cut(s) 653, 877
EcoRII CCWGG 3 cut(s) 811, 1091, 1118
EcoT14I CCWWGG 2 cut(s) 86, 729
EcoT38I GRGCYC 2 cut(s) 655, 879
ErhI CCWWGG 2 cut(s) 86, 729
FaeI CATG 4 cut(s) 560, 618, 1044, 1265
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1147, 1179
FatI CATG 4 cut(s) 556, 614, 1040, 1261
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 551, 912, 1177
FokI GGATG 3 cut(s) 16, 1332, 1336
FriOI GRGCYC 2 cut(s) 655, 879
Fsp4HI GCNGC 3 cut(s) 551, 912, 1177
FspBI CTAG 3 cut(s) 747, 906, 1128
GlaI GCGC 1 cut(s) 328
GluI GCNGC 3 cut(s) 551, 912, 1177
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 5 cut(s) 123, 386, 684, 834, 1102
HaeIII GGCC 5 cut(s) 141, 659, 819, 1091, 1304
HapII CCGG 4 cut(s) 421, 572, 941, 1029
HhaI GCGC 1 cut(s) 329
Hin1II CATG 4 cut(s) 560, 618, 1044, 1265
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 2 cut(s) 861, 1051
HindII GTYRAC 2 cut(s) 861, 1051
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 6 cut(s) 94, 335, 434, 893, 1111, 1308
HpaII CCGG 4 cut(s) 421, 572, 941, 1029
HphI GGTGA 2 cut(s) 718, 1243
Hpy166II GTNNAC 4 cut(s) 305, 861, 929, 1051
Hpy188I TCNGA 6 cut(s) 177, 189, 449, 787, 845, 874
Hpy188III TCNNGA 2 cut(s) 403, 701
Hpy8I GTNNAC 4 cut(s) 305, 861, 929, 1051
Hpy99I CGWCG 2 cut(s) 644, 871
HpyAV CCTTC 2 cut(s) 44, 1355
HpyCH4III ACNGT 5 cut(s) 122, 858, 949, 1169, 1202
HpyCH4IV ACGT 3 cut(s) 639, 866, 1080
HpyCH4V TGCA 7 cut(s) 167, 305, 476, 524, 852, 1010, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
HpyF3I CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1109, 1154
HpySE526I ACGT 3 cut(s) 639, 866, 1080
Hsp92II CATG 4 cut(s) 560, 618, 1044, 1265
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
LmnI GCTCC 4 cut(s) 296, 650, 673, 971
Lsp1109I GCAGC 2 cut(s) 562, 923
MaeI CTAG 3 cut(s) 747, 906, 1128
MaeII ACGT 3 cut(s) 639, 866, 1080
MaeIII GTNAC 6 cut(s) 58, 122, 724, 758, 943, 1066
MalI GATC 6 cut(s) 174, 183, 269, 451, 924, 1269
MboI GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
MboII GAAGA 3 cut(s) 176, 344, 1199
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 307, 420, 655, 879
MluCI AATT 9 cut(s) 81, 110, 271, 339, 528, 672, 789, 839, 934
MlyI GAGTC 3 cut(s) 103, 887, 1120
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 9 cut(s) 76, 98, 410, 670, 708, 809, 830, 1264, 1294
MseI TTAA 2 cut(s) 77, 468
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 1291
MspI CCGG 4 cut(s) 421, 572, 941, 1029
MspR9I CCNGG 3 cut(s) 813, 1093, 1120
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 3 cut(s) 813, 1093, 1120
MwoI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
NdeI CATATG 1 cut(s) 595
NdeII GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
NheI GCTAGC 1 cut(s) 1127
NlaIII CATG 4 cut(s) 560, 618, 1044, 1265
NlaIV GGNNCC 2 cut(s) 292, 368
NmuCI GTSAC 2 cut(s) 58, 724
NspI RCATGY 1 cut(s) 560
PaqCI CACCTGC 1 cut(s) 1001
PceI AGGCCT 1 cut(s) 819
PctI GAATGC 1 cut(s) 609
PfeI GAWTC 3 cut(s) 335, 434, 1308
PflFI GACNNNGTC 1 cut(s) 865
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 3 cut(s) 552, 913, 1178
Ple19I CGATCG 1 cut(s) 925
PleI GAGTC 3 cut(s) 102, 887, 1119
PmaCI CACGTG 1 cut(s) 1081
PmlI CACGTG 1 cut(s) 1081
PpsI GAGTC 3 cut(s) 102, 887, 1119
Ppu21I YACGTR 1 cut(s) 1081
Psp124BI GAGCTC 2 cut(s) 655, 879
Psp6I CCWGG 3 cut(s) 811, 1091, 1118
PspCI CACGTG 1 cut(s) 1081
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 3 cut(s) 811, 1091, 1118
PspN4I GGNNCC 2 cut(s) 292, 368
PspPI GGNCC 1 cut(s) 1089
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 865
PvuI CGATCG 1 cut(s) 925
RsaI GTAC 2 cut(s) 425, 696
RsaNI GTAC 2 cut(s) 424, 695
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 2 cut(s) 655, 879
SaqAI TTAA 2 cut(s) 77, 468
SatI GCNGC 3 cut(s) 551, 912, 1177
Sau3AI GATC 6 cut(s) 172, 181, 267, 449, 922, 1267
Sau96I GGNCC 1 cut(s) 1089
SchI GAGTC 3 cut(s) 103, 887, 1120
ScrFI CCNGG 3 cut(s) 813, 1093, 1120
SduI GDGCHC 4 cut(s) 307, 420, 655, 879
SfcI CTRYAG 3 cut(s) 510, 948, 981
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 823, 878
SmoI CTYRAG 2 cut(s) 823, 878
Sse9I AATT 9 cut(s) 81, 110, 271, 339, 528, 672, 789, 839, 934
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 3 cut(s) 957, 1176, 1291
SspI AATATT 1 cut(s) 1005
SspMI CTAG 3 cut(s) 747, 906, 1128
SstI GAGCTC 2 cut(s) 655, 879
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 3 cut(s) 811, 1091, 1118
StyI CCWWGG 2 cut(s) 86, 729
TaaI ACNGT 5 cut(s) 122, 858, 949, 1169, 1202
TaiI ACGT 3 cut(s) 642, 869, 1083
TaqI TCGA 1 cut(s) 896
TasI AATT 9 cut(s) 81, 110, 271, 339, 528, 672, 789, 839, 934
TauI GCSGC 1 cut(s) 1179
TfiI GAWTC 3 cut(s) 335, 434, 1308
Tru1I TTAA 2 cut(s) 77, 468
Tru9I TTAA 2 cut(s) 77, 468
TscAI CASTG 3 cut(s) 307, 1207, 1241
TseFI GTSAC 2 cut(s) 58, 724
TseI GCWGC 2 cut(s) 550, 911
Tsp45I GTSAC 2 cut(s) 58, 724
TspDTI ATGAA 4 cut(s) 17, 147, 603, 966
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 3 cut(s) 307, 1207, 1241
Tth111I GACNNNGTC 1 cut(s) 865
Van91I CCANNNNNTGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 303
XapI RAATTY 3 cut(s) 81, 528, 839
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 2 cut(s) 644, 1223
XspI CTAG 3 cut(s) 747, 906, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.