RchiOBHm_Chr5g0056271

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
59841528 .. 59844581
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33317

Sequence Viewer

Length: 1524 bp
ATGGAAATAAAGCGACTGACATTCTCACACCAATCATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCCAGGCTGAGTCCAACTGGAGGACAATTTATAGATGGTAACTATTGGACACAAAGCCGACCCAGCGAAGCTTCATCACCTGCATTTGATCCCAAAGATTTTCAGGCATTTTATTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCAATACTCGCTTACTTAGGCGCAGAAGAGTCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCCAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGACTAAAGTATCCCCACGTCACTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTCGATGACATTGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCAAGAAGCGAGTGAGACTTGCTACCAAATCATAAAAAAGTCATGGTCTGAAATTGATAATATTGCTTCTAAGCGTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCAAGTCGTCTGAGCTCAAGAACTACTTGAAGTCGATGTATGCTAGGGCAGCTCAATATGATCGTCCACCGAAATATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACTGGAAACCGGTCATGCTATGTCAACCAGCCCAGAAACCTAACAGAAACAGACGTGGGGTGGCGATGGCAGACATGTAGCGACTTGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATGTCGATGAATATATCAATAAATGCAAGGCAACCTATGGCGTCCCTCCCAGACCTAATTGGGTGACTACATACTTTGGAGGCCATGACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTTGCTGTCCATGCAAAAAATGGGTCTCACTGCTTGGATATTCTCACCTCAAACCAGACTACCGATCCAGACTGGCTGGTCAATCAGCGGAAAAGTGAGGTCAAAATCATCAAAGGATGGATAGCTAAATACTATGCTGACCTACAAGCTCTCCAGTAA

Protein Analysis

507

Amino Acids

57.0

Weight (kDa)

6.86

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 71 - 486 4e-72 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 178, 1007
AasI GACNNNNNNGTC 2 cut(s) 874, 1442
Acc36I ACCTGC 2 cut(s) 178, 1007
AccB7I CCANNNNNTGG 1 cut(s) 288
AciI CCGC 3 cut(s) 963, 1335, 1453
AclWI GGATC 4 cut(s) 173, 450, 463, 1424
AcsI RAATTY 4 cut(s) 87, 534, 845, 1166
AcyI GRCGYC 1 cut(s) 1212
AfaI GTAC 2 cut(s) 431, 1163
AfiI CCNNNNNNNGG 4 cut(s) 110, 288, 368, 713
AflIII ACRYGT 2 cut(s) 544, 1106
AgeI ACCGGT 2 cut(s) 426, 1041
AgsI TTSAA 7 cut(s) 229, 250, 260, 401, 502, 746, 898
AjiI CACGTC 2 cut(s) 646, 1087
AjnI CCWGG 2 cut(s) 92, 458
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
Alw21I GWGCWC 4 cut(s) 313, 426, 661, 885
Alw26I GTCTC 4 cut(s) 752, 1277, 1311, 1395
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 4 cut(s) 173, 450, 463, 1424
AoxI GGCC 3 cut(s) 663, 823, 1252
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 4 cut(s) 87, 534, 845, 1166
ArsI GACNNNNNNTTYG 4 cut(s) 1158, 1190, 1373, 1405
AsiGI ACCGGT 2 cut(s) 426, 1041
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 5 cut(s) 159, 724, 1132, 1246, 1402
AsuNHI GCTAGC 1 cut(s) 1286
BaeGI GKGCMC 1 cut(s) 313
BaeI ACNNNNGTAYC 2 cut(s) 620, 653
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 661, 885
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 4 cut(s) 313, 426, 661, 885
BbvI GCAGC 1 cut(s) 929
BccI CCATC 4 cut(s) 119, 968, 1092, 1476
BciT130I CCWGG 2 cut(s) 94, 460
BciVI GTATCC 3 cut(s) 488, 648, 710
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BfaI CTAG 2 cut(s) 912, 1287
BfmI CTRYAG 3 cut(s) 516, 954, 987
BfuAI ACCTGC 2 cut(s) 178, 1007
BfuI GTATCC 3 cut(s) 488, 648, 710
BisI GCNGC 2 cut(s) 918, 1336
BlsI GCNGC 2 cut(s) 919, 1337
Bme1390I CCNGG 2 cut(s) 94, 460
BmgBI CACGTC 2 cut(s) 646, 1087
BmiI GGNNCC 3 cut(s) 298, 374, 457
BmrFI CCNGG 2 cut(s) 94, 460
BmtI GCTAGC 1 cut(s) 1290
BpiI GAAGAC 1 cut(s) 1353
BpmI CTGGAG 5 cut(s) 129, 392, 690, 1261, 1502
BpuEI CTTGAG 2 cut(s) 814, 869
BsaHI GRCGYC 1 cut(s) 1212
BsaI GGTCTC 2 cut(s) 1311, 1395
BsaJI CCNNGG 3 cut(s) 92, 459, 735
BsaWI WCCGGW 4 cut(s) 426, 577, 946, 1041
BsaXI ACNNNNNCTCC 1 cut(s) 1500
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 288, 368, 713
Bse118I RCCGGY 2 cut(s) 426, 1041
Bse1I ACTGG 4 cut(s) 112, 1039, 1442, 1519
BseBI CCWGG 2 cut(s) 94, 460
BseDI CCNNGG 3 cut(s) 92, 459, 735
BseGI GGATG 2 cut(s) 35, 1487
BseLI CCNNNNNNNGG 4 cut(s) 110, 288, 368, 713
BseMII CTCAG 5 cut(s) 87, 89, 519, 870, 1259
BseNI ACTGG 4 cut(s) 112, 1039, 1442, 1519
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 929
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 3 cut(s) 665, 825, 1254
BshTI ACCGGT 2 cut(s) 426, 1041
BsiHKAI GWGCWC 4 cut(s) 313, 426, 661, 885
BsiSI CCGG 4 cut(s) 427, 578, 947, 1042
BslFI GGGAC 1 cut(s) 1199
BslI CCNNNNNNNGG 4 cut(s) 110, 288, 368, 713
BsmAI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BsmFI GGGAC 1 cut(s) 1199
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 3 cut(s) 665, 825, 1254
Bso31I GGTCTC 2 cut(s) 1311, 1395
Bsp1286I GDGCHC 4 cut(s) 313, 426, 661, 885
Bsp143I GATC 5 cut(s) 178, 273, 455, 928, 1429
BspACI CCGC 3 cut(s) 963, 1335, 1453
BspANI GGCC 3 cut(s) 665, 825, 1254
BspCNI CTCAG 5 cut(s) 86, 90, 518, 871, 1260
BspLI GGNNCC 3 cut(s) 298, 374, 457
BspMI ACCTGC 2 cut(s) 178, 1007
BspOI GCTAGC 1 cut(s) 1290
BspPI GGATC 4 cut(s) 173, 450, 463, 1424
BspTNI GGTCTC 2 cut(s) 1311, 1395
BsrFI RCCGGY 2 cut(s) 426, 1041
BsrI ACTGG 4 cut(s) 112, 1039, 1442, 1519
BssAI RCCGGY 2 cut(s) 426, 1041
BssECI CCNNGG 3 cut(s) 92, 459, 735
BssMI GATC 5 cut(s) 178, 273, 455, 928, 1429
BssNI GRCGYC 1 cut(s) 1212
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 94, 460
Bst4CI ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 1 cut(s) 1212
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 484, 615, 1288
BstDEI CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1268, 1313
BstF5I GGATG 2 cut(s) 35, 1487
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 181, 276, 458, 931, 1432
BstMAI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BstMBI GATC 5 cut(s) 178, 273, 455, 928, 1429
BstMWI GCNNNNNNNGC 5 cut(s) 153, 527, 671, 917, 1376
BstNI CCWGG 2 cut(s) 94, 460
BstNSI RCATGY 3 cut(s) 548, 566, 1110
BstSCI CCNGG 2 cut(s) 92, 458
BstSFI CTRYAG 3 cut(s) 516, 954, 987
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 929
BstV2I GAAGAC 1 cut(s) 1353
BstX2I RGATCY 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 455
BsuI GTATCC 3 cut(s) 488, 648, 710
BsuRI GGCC 3 cut(s) 665, 825, 1254
BtgZI GCGATG 1 cut(s) 1111
BtrI CACGTC 2 cut(s) 646, 1087
BtsCI GGATG 2 cut(s) 35, 1487
BtsI GCAGTG 1 cut(s) 1393
BtsIMutI CAGTG 3 cut(s) 313, 1366, 1393
BveI ACCTGC 2 cut(s) 178, 1007
Cac8I GCNNGC 3 cut(s) 484, 615, 1288
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 2 cut(s) 426, 1041
CseI GACGC 1 cut(s) 1201
Csp6I GTAC 2 cut(s) 430, 1162
CspAI ACCGGT 2 cut(s) 426, 1041
CviAII CATG 9 cut(s) 545, 563, 621, 786, 1047, 1107, 1150, 1256, 1376
CviQI GTAC 2 cut(s) 430, 1162
DdeI CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1268, 1313
DpnI GATC 5 cut(s) 180, 275, 457, 930, 1431
DpnII GATC 5 cut(s) 178, 273, 455, 928, 1429
DraI TTTAAA 1 cut(s) 475
DrdI GACNNNNNNGTC 2 cut(s) 874, 1442
DseDI GACNNNNNNGTC 2 cut(s) 874, 1442
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 2 cut(s) 659, 883
Eco130I CCWWGG 1 cut(s) 735
Eco147I AGGCCT 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 661, 885
Eco31I GGTCTC 2 cut(s) 1311, 1395
Eco53kI GAGCTC 2 cut(s) 659, 883
EcoICRI GAGCTC 2 cut(s) 659, 883
EcoRII CCWGG 2 cut(s) 92, 458
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 2 cut(s) 661, 885
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 9 cut(s) 548, 566, 624, 789, 1050, 1110, 1153, 1259, 1379
FalI AAGNNNNNCTT 4 cut(s) 878, 910, 1306, 1338
FaqI GGGAC 1 cut(s) 1199
FatI CATG 9 cut(s) 544, 562, 620, 785, 1046, 1106, 1149, 1255, 1375
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 918, 1336
FokI GGATG 2 cut(s) 22, 1494
FriOI GRGCYC 2 cut(s) 661, 885
Fsp4HI GCNGC 2 cut(s) 918, 1336
FspBI CTAG 2 cut(s) 912, 1287
GlaI GCGC 1 cut(s) 334
GluI GCNGC 2 cut(s) 918, 1336
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 5 cut(s) 129, 392, 690, 1261, 1502
HaeIII GGCC 3 cut(s) 665, 825, 1254
HapII CCGG 4 cut(s) 427, 578, 947, 1042
HgaI GACGC 1 cut(s) 1201
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 1212
Hin1II CATG 9 cut(s) 548, 566, 624, 789, 1050, 1110, 1153, 1259, 1379
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 2 cut(s) 867, 1057
HindII GTYRAC 2 cut(s) 867, 1057
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 5 cut(s) 100, 341, 440, 1123, 1270
HpaII CCGG 4 cut(s) 427, 578, 947, 1042
HphI GGTGA 5 cut(s) 159, 724, 1132, 1246, 1402
Hpy166II GTNNAC 5 cut(s) 311, 867, 935, 1057, 1138
Hpy188I TCNGA 5 cut(s) 455, 793, 851, 880, 1357
Hpy188III TCNNGA 6 cut(s) 409, 707, 746, 886, 1278, 1433
Hpy8I GTNNAC 5 cut(s) 311, 867, 935, 1057, 1138
HpyAV CCTTC 2 cut(s) 50, 815
HpyCH4III ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
HpyCH4IV ACGT 2 cut(s) 645, 1086
HpyCH4V TGCA 9 cut(s) 173, 311, 482, 530, 858, 1016, 1028, 1197, 1379
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 527, 671, 917, 1376
HpyF3I CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1268, 1313
HpySE526I ACGT 2 cut(s) 645, 1086
Hsp92I GRCGYC 1 cut(s) 1212
Hsp92II CATG 9 cut(s) 548, 566, 624, 789, 1050, 1110, 1153, 1259, 1379
HspAI GCGC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 178, 273, 455, 928, 1429
LmnI GCTCC 4 cut(s) 302, 656, 679, 977
Lsp1109I GCAGC 1 cut(s) 929
MaeI CTAG 2 cut(s) 912, 1287
MaeII ACGT 2 cut(s) 645, 1086
MaeIII GTNAC 6 cut(s) 64, 128, 646, 730, 949, 1234
MalI GATC 5 cut(s) 180, 275, 457, 930, 1431
MboI GATC 5 cut(s) 178, 273, 455, 928, 1429
MboII GAAGA 2 cut(s) 350, 1358
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 4 cut(s) 313, 426, 661, 885
MlyI GAGTC 3 cut(s) 109, 350, 1279
MmeI TCCRAC 1 cut(s) 128
MseI TTAA 2 cut(s) 83, 474
MslI CAYNNNNRTG 2 cut(s) 291, 1133
MspA1I CMGCKG 1 cut(s) 1453
MspI CCGG 4 cut(s) 427, 578, 947, 1042
MspR9I CCNGG 2 cut(s) 94, 460
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 2 cut(s) 94, 460
MwoI GCNNNNNNNGC 5 cut(s) 153, 527, 671, 917, 1376
NdeI CATATG 1 cut(s) 601
NdeII GATC 5 cut(s) 178, 273, 455, 928, 1429
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 9 cut(s) 548, 566, 624, 789, 1050, 1110, 1153, 1259, 1379
NlaIV GGNNCC 3 cut(s) 298, 374, 457
NmuCI GTSAC 4 cut(s) 64, 646, 730, 1234
NspI RCATGY 3 cut(s) 548, 566, 1110
PaqCI CACCTGC 2 cut(s) 178, 1007
PceI AGGCCT 1 cut(s) 825
PciI ACATGT 2 cut(s) 544, 1106
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 2 cut(s) 440, 1123
PflFI GACNNNGTC 1 cut(s) 871
PflMI CCANNNNNTGG 1 cut(s) 288
PinAI ACCGGT 2 cut(s) 426, 1041
PkrI GCNGC 2 cut(s) 919, 1337
PleI GAGTC 3 cut(s) 108, 349, 1278
PpsI GAGTC 3 cut(s) 108, 349, 1278
PscI ACATGT 2 cut(s) 544, 1106
Psp124BI GAGCTC 2 cut(s) 661, 885
Psp6I CCWGG 2 cut(s) 92, 458
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 92, 458
PspN4I GGNNCC 3 cut(s) 298, 374, 457
PsuI RGATCY 1 cut(s) 455
PsyI GACNNNGTC 1 cut(s) 871
RsaI GTAC 2 cut(s) 431, 1163
RsaNI GTAC 2 cut(s) 430, 1162
RseI CAYNNNNRTG 2 cut(s) 291, 1133
SacI GAGCTC 2 cut(s) 661, 885
SaqAI TTAA 2 cut(s) 83, 474
SatI GCNGC 2 cut(s) 918, 1336
Sau3AI GATC 5 cut(s) 178, 273, 455, 928, 1429
SchI GAGTC 3 cut(s) 109, 350, 1279
ScrFI CCNGG 2 cut(s) 94, 460
SduI GDGCHC 4 cut(s) 313, 426, 661, 885
SfcI CTRYAG 3 cut(s) 516, 954, 987
SmiMI CAYNNNNRTG 2 cut(s) 291, 1133
SmlI CTYRAG 2 cut(s) 829, 884
SmoI CTYRAG 2 cut(s) 829, 884
SseBI AGGCCT 1 cut(s) 825
SsiI CCGC 3 cut(s) 963, 1335, 1453
SspI AATATT 2 cut(s) 805, 1011
SspMI CTAG 2 cut(s) 912, 1287
SstI GAGCTC 2 cut(s) 661, 885
StuI AGGCCT 1 cut(s) 825
StyD4I CCNGG 2 cut(s) 92, 458
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
TaiI ACGT 2 cut(s) 648, 1089
TaqI TCGA 4 cut(s) 628, 690, 902, 1176
TauI GCSGC 1 cut(s) 1338
TfiI GAWTC 2 cut(s) 440, 1123
Tru1I TTAA 2 cut(s) 83, 474
Tru9I TTAA 2 cut(s) 83, 474
TscAI CASTG 3 cut(s) 313, 1366, 1400
TseFI GTSAC 4 cut(s) 64, 646, 730, 1234
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 4 cut(s) 64, 646, 730, 1234
TspDTI ATGAA 4 cut(s) 153, 609, 972, 1194
TspRI CASTG 3 cut(s) 313, 1366, 1400
Tth111I GACNNNGTC 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 4 cut(s) 87, 534, 845, 1166
XceI RCATGY 3 cut(s) 548, 566, 1110
XcmI CCANNNNNNNNNTGG 2 cut(s) 650, 1382
XspI CTAG 2 cut(s) 912, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.