Rh5DG392500

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
61463436 .. 61466419
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG392500.1

Sequence Viewer

Length: 1290 bp
ATGAATCCACTTTTAGGTTCAGTTCTTCAATGCCTTGTCCTAATTATCTCTCGATTCGCCCTAACCTCTGGTTCTCTACACATTCCAAGGTTGAGTCCAATTAGACCAGGGATGTTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGTGGTTCCAATATTAGTGCACCAATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAGGCTCTCCTCATATATATAGAGCACCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGGACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCATCGGCTCCGATTCTTTACTTTGATGACATTATTCCGCCAGAAAATGGATACTTCTCCATTGTCACGAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATAAAACAGTCTTGGTCTGAAATTGATGCACTTGCTTCTATGCCTGATGGTCTCTCAAATCTTAGCAAAATGTTCCACACTTGCAGGCCCTTGAGCGCGGCATCCTATCTCAAATACTCCTTGCAGTCAATGTACATGAAGGCAGCTCAGTTCGATGATCCATCAACAAATCCAGTTAATATGATCTGCAATGGTATTGATGGAGCTTCTTCAACTAATGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACTCATGCTACCTTAATGATACACCCAGTAGTACTAATGCATTACCAAGCAGTACTAACGATGATGAAACATCTTTGGGATGGAGTTGGCAGGCACAGTATGGCGTCCCTTCTCGCCCTAATTGGGTCACTACATATTACGGAGGCCATGTATATTCGCTAGTAACATCATTTTCTCTAATGGACTCAGAGATCCTTACAGCAGTGGCGGGGTATTGCAAAATATATCAGACAGTCTTGTCGCAGTCTATACAAACAATGGGTCTCATTGCCTAG

Protein Analysis

429

Amino Acids

47.23

Weight (kDa)

5.44

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 62 - 370 7.6e-58 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1252
AccB7I CCANNNNNTGG 2 cut(s) 261, 686
AccII CGCG 1 cut(s) 845
AciI CCGC 3 cut(s) 677, 845, 1223
AclWI GGATC 3 cut(s) 502, 899, 1201
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 1119
AfaI GTAC 5 cut(s) 260, 404, 881, 1048, 1069
AfiI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1138
AflIII ACRYGT 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 6 cut(s) 29, 202, 233, 449, 475, 960
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 8 cut(s) 137, 219, 488, 632, 638, 725, 893, 953
AluI AGCT 8 cut(s) 137, 219, 488, 632, 638, 725, 893, 953
Alw21I GWGCWC 3 cut(s) 286, 399, 634
Alw26I GTCTC 3 cut(s) 725, 803, 1283
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 3 cut(s) 502, 899, 1201
AoxI GGCC 3 cut(s) 833, 991, 1159
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 890
ArsI GACNNNNNNTTYG 3 cut(s) 125, 157, 1261
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 308, 845
AspS9I GGNCC 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 634
Bbv12I GWGCWC 3 cut(s) 286, 399, 634
BbvI GCAGC 1 cut(s) 902
BccI CCATC 4 cut(s) 788, 916, 941, 1089
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 2 cut(s) 193, 246
BcoDI GTCTC 3 cut(s) 725, 803, 1283
BfaI CTAG 6 cut(s) 432, 491, 635, 726, 1175, 1288
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 2 cut(s) 846, 891
BlsI GCNGC 2 cut(s) 847, 892
BmcAI AGTACT 3 cut(s) 260, 1048, 1069
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 2 cut(s) 271, 648
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 2 cut(s) 271, 1035
BmsI GCATC 4 cut(s) 142, 578, 763, 857
BmuI ACTGGG 2 cut(s) 271, 1035
BpuEI CTTGAG 1 cut(s) 859
BsaHI GRCGYC 1 cut(s) 1119
BsaI GGTCTC 2 cut(s) 803, 1283
BsaJI CCNNGG 3 cut(s) 86, 107, 301
BsaWI WCCGGW 2 cut(s) 399, 550
BsaXI ACNNNNNCTCC 2 cut(s) 1149, 1179
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1138
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 4 cut(s) 266, 346, 920, 1041
Bse3DI GCAATG 2 cut(s) 943, 1281
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 86, 107, 301
BseGI GGATG 3 cut(s) 117, 848, 1100
BseLI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1138
BseMI GCAATG 2 cut(s) 943, 1281
BseMII CTCAG 4 cut(s) 492, 495, 908, 1215
BseNI ACTGG 4 cut(s) 266, 346, 920, 1041
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 902
Bsh1236I CGCG 1 cut(s) 845
BshFI GGCC 3 cut(s) 835, 993, 1161
BshTI ACCGGT 1 cut(s) 399
BsiHKAI GWGCWC 3 cut(s) 286, 399, 634
BsiSI CCGG 2 cut(s) 400, 551
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1138
BsmAI GTCTC 3 cut(s) 725, 803, 1283
BsmFI GGGAC 1 cut(s) 1106
BsmI GAATGC 2 cut(s) 541, 588
BsnI GGCC 3 cut(s) 835, 993, 1161
Bso31I GGTCTC 2 cut(s) 803, 1283
Bsp1286I GDGCHC 3 cut(s) 286, 399, 634
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
BspACI CCGC 3 cut(s) 677, 845, 1223
BspANI GGCC 3 cut(s) 835, 993, 1161
BspCNI CTCAG 4 cut(s) 491, 496, 907, 1214
BspFNI CGCG 1 cut(s) 845
BspLI GGNNCC 2 cut(s) 271, 648
BspPI GGATC 3 cut(s) 502, 899, 1201
BspTNI GGTCTC 2 cut(s) 803, 1283
BsrDI GCAATG 2 cut(s) 943, 1281
BsrFI RCCGGY 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 4 cut(s) 266, 346, 920, 1041
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 86, 107, 301
BssMI GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
BssNI GRCGYC 1 cut(s) 1119
BssT1I CCWWGG 2 cut(s) 86, 301
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 756, 1113, 1249
BstACI GRCGYC 1 cut(s) 1119
BstAPI GCANNNNNTGC 2 cut(s) 152, 500
BstAUI TGTACA 1 cut(s) 879
BstC8I GCNNGC 5 cut(s) 457, 588, 833, 991, 1107
BstDEI CTNAG 5 cut(s) 478, 504, 809, 894, 1201
BstF5I GGATG 3 cut(s) 117, 848, 1100
BstFNI CGCG 1 cut(s) 845
BstHHI GCGC 2 cut(s) 308, 845
BstKTI GATC 7 cut(s) 122, 196, 249, 510, 907, 933, 1209
BstMAI GTCTC 3 cut(s) 725, 803, 1283
BstMBI GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
BstMWI GCNNNNNNNGC 6 cut(s) 143, 152, 465, 500, 629, 644
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 845
BstV1I GCAGC 1 cut(s) 902
BstX2I RGATCY 2 cut(s) 507, 1206
BstYI RGATCY 2 cut(s) 507, 1206
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 3 cut(s) 835, 993, 1161
BtsCI GGATG 3 cut(s) 117, 848, 1100
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 1 cut(s) 1224
Cac8I GCNNGC 5 cut(s) 457, 588, 833, 991, 1107
CfoI GCGC 2 cut(s) 308, 845
Cfr10I RCCGGY 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 834
CseI GACGC 2 cut(s) 535, 1108
Csp6I GTAC 5 cut(s) 259, 403, 880, 1047, 1068
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 5 cut(s) 518, 594, 883, 1020, 1163
CviQI GTAC 5 cut(s) 259, 403, 880, 1047, 1068
DdeI CTNAG 5 cut(s) 478, 504, 809, 894, 1201
DpnI GATC 7 cut(s) 121, 195, 248, 509, 906, 932, 1208
DpnII GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
DrdI GACNNNNNNGTC 1 cut(s) 1252
DseDI GACNNNNNNGTC 1 cut(s) 1252
EciI GGCGGA 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 632
Eco130I CCWWGG 2 cut(s) 86, 301
Eco24I GRGCYC 1 cut(s) 634
Eco31I GGTCTC 2 cut(s) 803, 1283
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 86, 301
EcoT22I ATGCAT 1 cut(s) 1057
EcoT38I GRGCYC 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 86, 301
FaeI CATG 5 cut(s) 521, 597, 886, 1023, 1166
FaqI GGGAC 1 cut(s) 1106
FatI CATG 5 cut(s) 517, 593, 882, 1019, 1162
FauI CCCGC 1 cut(s) 1216
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 193, 246
Fnu4HI GCNGC 2 cut(s) 846, 891
FokI GGATG 3 cut(s) 124, 835, 1107
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 2 cut(s) 846, 891
FspBI CTAG 6 cut(s) 432, 491, 635, 726, 1175, 1288
GlaI GCGC 2 cut(s) 307, 844
GluI GCNGC 2 cut(s) 846, 891
HaeIII GGCC 3 cut(s) 835, 993, 1161
HapII CCGG 2 cut(s) 400, 551
HgaI GACGC 2 cut(s) 535, 1108
HhaI GCGC 2 cut(s) 308, 845
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 5 cut(s) 521, 597, 886, 1023, 1166
Hin6I GCGC 2 cut(s) 306, 843
HinP1I GCGC 2 cut(s) 306, 843
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 6 cut(s) 4, 54, 94, 413, 652, 1199
HpaII CCGG 2 cut(s) 400, 551
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 5 cut(s) 209, 651, 766, 1204, 1245
Hpy188III TCNNGA 4 cut(s) 51, 432, 706, 719
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 703, 880, 1134
HpyCH4III ACNGT 3 cut(s) 756, 1113, 1249
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 152, 465, 500, 629, 644
HpyF3I CTNAG 5 cut(s) 478, 504, 809, 894, 1201
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 5 cut(s) 521, 597, 886, 1023, 1166
HspAI GCGC 2 cut(s) 306, 843
Ksp22I TGATCA 2 cut(s) 193, 246
Kzo9I GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
LmnI GCTCC 3 cut(s) 629, 652, 950
Lsp1109I GCAGC 1 cut(s) 902
LweI GCATC 4 cut(s) 142, 578, 763, 857
MaeI CTAG 6 cut(s) 432, 491, 635, 726, 1175, 1288
MaeIII GTNAC 3 cut(s) 703, 1141, 1177
MalI GATC 7 cut(s) 121, 195, 248, 509, 906, 932, 1208
MboI GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
MboII GAAGA 2 cut(s) 17, 948
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 2 cut(s) 507, 1206
MhlI GDGCHC 3 cut(s) 286, 399, 634
MluCI AATT 6 cut(s) 42, 99, 250, 768, 1002, 1135
MlyI GAGTC 2 cut(s) 103, 1193
MnlI CCTC 4 cut(s) 76, 392, 521, 1151
Mph1103I ATGCAT 1 cut(s) 1057
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 2 cut(s) 924, 1029
MspI CCGG 2 cut(s) 400, 551
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 1002
Mva1269I GAATGC 2 cut(s) 541, 588
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 845
MwoI GCNNNNNNNGC 6 cut(s) 143, 152, 465, 500, 629, 644
NdeI CATATG 1 cut(s) 574
NdeII GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
NlaIII CATG 5 cut(s) 521, 597, 886, 1023, 1166
NlaIV GGNNCC 2 cut(s) 271, 648
NmuCI GTSAC 2 cut(s) 703, 1141
NsiI ATGCAT 1 cut(s) 1057
NspI RCATGY 1 cut(s) 521
PciI ACATGT 1 cut(s) 517
PctI GAATGC 2 cut(s) 541, 588
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 4 cut(s) 4, 54, 413, 652
PflMI CCANNNNNTGG 2 cut(s) 261, 686
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 2 cut(s) 847, 892
PleI GAGTC 2 cut(s) 102, 1193
PpsI GAGTC 2 cut(s) 102, 1193
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 271, 648
PspPI GGNCC 1 cut(s) 834
PsuI RGATCY 2 cut(s) 507, 1206
RsaI GTAC 5 cut(s) 260, 404, 881, 1048, 1069
RsaNI GTAC 5 cut(s) 259, 403, 880, 1047, 1068
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 2 cut(s) 924, 1029
SatI GCNGC 2 cut(s) 846, 891
Sau3AI GATC 7 cut(s) 119, 193, 246, 507, 904, 930, 1206
Sau96I GGNCC 1 cut(s) 834
ScaI AGTACT 3 cut(s) 260, 1048, 1069
SchI GAGTC 2 cut(s) 103, 1193
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 3 cut(s) 286, 399, 634
SfaNI GCATC 4 cut(s) 142, 578, 763, 857
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
Sse9I AATT 6 cut(s) 42, 99, 250, 768, 1002, 1135
SsiI CCGC 3 cut(s) 677, 845, 1223
SspI AATATT 3 cut(s) 277, 291, 984
SspMI CTAG 6 cut(s) 432, 491, 635, 726, 1175, 1288
SstI GAGCTC 1 cut(s) 634
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 86, 301
TaaI ACNGT 3 cut(s) 756, 1113, 1249
TaqI TCGA 5 cut(s) 52, 118, 131, 718, 900
TasI AATT 6 cut(s) 42, 99, 250, 768, 1002, 1135
TatI WGTACW 4 cut(s) 258, 879, 1046, 1067
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 4 cut(s) 4, 54, 413, 652
Tru1I TTAA 2 cut(s) 924, 1029
Tru9I TTAA 2 cut(s) 924, 1029
TscAI CASTG 1 cut(s) 1224
TseFI GTSAC 2 cut(s) 703, 1141
TseI GCWGC 1 cut(s) 890
Tsp45I GTSAC 2 cut(s) 703, 1141
TspDTI ATGAA 5 cut(s) 17, 582, 630, 899, 1095
TspGWI ACGGA 2 cut(s) 423, 1170
TspRI CASTG 1 cut(s) 1224
Van91I CCANNNNNTGG 2 cut(s) 261, 686
VneI GTGCAC 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 6 cut(s) 432, 491, 635, 726, 1175, 1288
ZrmI AGTACT 3 cut(s) 260, 1048, 1069
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.