Prupe.6G031200_v2.0.a1

Lysosomal Pro-X carboxypeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000745
Physical Location & Seq
Reverse (-)
2422721 .. 2424869
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G031200.1

Sequence Viewer

Length: 687 bp
ATGGCATCTGATTCTCTACTCAAATTCGTACACATTACACAGTTGGCCTGGCTACCTGAATTAATTTGGGTTGTTCTTTCAAGTTTCTGTTCTTCTTCATCTAAACCCTATGTGATCAATTTGAAGTATTGGGGTGGCTCCAATATTAGTGCACCAATATTTGCTTACCTGGGTGCAGAACAACCATTAGGTGATAATTTAACTTGGCTTGGCTTTCTCACAGATAATGCCCTTCAGTTTAAAGCTCTCCTGGTATATATAGAGCACCGATGCTATGGGGAATCAGTCCCGTTCGGACCAATGGAGGAAGCATTTGAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAGATACTCATACATGTGAAGAAGGAACTACATGCTCAACATAGTCTGGTGATTGTTATTGGTGGATCATATGGTGGAATGCTTGCTGCATGGTTGCGCCTAAAATATCCGCACGTCACTGTTGGAGCTCTGGCCTCATCAGCTCCAGTTTTTTACTTCGATAACATTGTTGCCCCAGAAAATGGATACTACTCCATCGTTTCAAGAAGGTTGGTCAACCGGCGCAAAATTGAGGTGAGAATTATTAAAGGATGGATTGACAAGTACTCCGTGGATCTTCAGGCATTAAAACATGAAAAACCACTCCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 ko04974 map04614 map04974
Pfam Domains
Protein Families
Peptidase_S28

Protein Analysis

229

Amino Acids

25.54

Weight (kDa)

7.05

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 554
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 445, 654
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 218, 635
AfaI GTAC 2 cut(s) 30, 638
AfiI CCNNNNNNNGG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 5 cut(s) 81, 124, 317, 343, 576
AjiI CACGTC 1 cut(s) 487
AjnI CCWGG 3 cut(s) 47, 168, 249
AluBI AGCT 4 cut(s) 245, 356, 500, 515
AluI AGCT 4 cut(s) 245, 356, 500, 515
Alw21I GWGCWC 3 cut(s) 154, 267, 502
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 2 cut(s) 445, 654
AoxI GGCC 2 cut(s) 45, 504
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 23
AseI ATTAAT 1 cut(s) 62
AspLEI GCGC 2 cut(s) 471, 597
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 203, 433, 619
AvaII GGWCC 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 502
Bbv12I GWGCWC 3 cut(s) 154, 267, 502
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 575, 618
BciT130I CCWGG 3 cut(s) 49, 170, 251
BciVI GTATCC 2 cut(s) 329, 551
BclI TGATCA 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 357
BfuI GTATCC 2 cut(s) 329, 551
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 3 cut(s) 49, 170, 251
Bme18I GGWCC 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 3 cut(s) 49, 170, 251
BmsI GCATC 2 cut(s) 14, 260
BpmI CTGGAG 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 169, 642
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 1 cut(s) 518
BseBI CCWGG 3 cut(s) 49, 170, 251
BseDI CCNNGG 2 cut(s) 169, 642
BseGI GGATG 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 47, 506
BsiHKAI GWGCWC 3 cut(s) 154, 267, 502
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 2 cut(s) 47, 506
Bsp1286I GDGCHC 3 cut(s) 154, 267, 502
Bsp143I GATC 3 cut(s) 114, 437, 646
BspACI CCGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 47, 506
BspCNI CTCAG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 445, 654
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 169, 642
BssMI GATC 3 cut(s) 114, 437, 646
Bst2UI CCWGG 3 cut(s) 49, 170, 251
Bst4CI ACNGT 2 cut(s) 42, 493
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 325, 456
BstDEI CTNAG 1 cut(s) 346
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 1 cut(s) 629
BstHHI GCGC 2 cut(s) 471, 597
BstKTI GATC 3 cut(s) 117, 440, 649
BstMBI GATC 3 cut(s) 114, 437, 646
BstMWI GCNNNNNNNGC 2 cut(s) 368, 512
BstNI CCWGG 3 cut(s) 49, 170, 251
BstNSI RCATGY 2 cut(s) 389, 407
BstSCI CCNGG 3 cut(s) 47, 168, 249
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuI GTATCC 2 cut(s) 329, 551
BsuRI GGCC 2 cut(s) 47, 506
BtgI CCRYGG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 1 cut(s) 629
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 2 cut(s) 325, 456
CfoI GCGC 2 cut(s) 471, 597
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 29, 637
CviAII CATG 4 cut(s) 386, 404, 462, 665
CviQI GTAC 2 cut(s) 29, 637
DdeI CTNAG 1 cut(s) 346
DpnI GATC 3 cut(s) 116, 439, 648
DpnII GATC 3 cut(s) 114, 437, 646
DraI TTTAAA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 500
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 218, 635
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 3 cut(s) 47, 168, 249
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 4 cut(s) 389, 407, 465, 668
FaqI GGGAC 1 cut(s) 272
FatI CATG 4 cut(s) 385, 403, 461, 664
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 1 cut(s) 636
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 1 cut(s) 459
GlaI GCGC 2 cut(s) 470, 596
GluI GCNGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 47, 506
HapII CCGG 1 cut(s) 592
HhaI GCGC 2 cut(s) 471, 597
Hin1II CATG 4 cut(s) 389, 407, 465, 668
Hin6I GCGC 2 cut(s) 469, 595
HinP1I GCGC 2 cut(s) 469, 595
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 2 cut(s) 11, 281
HpaII CCGG 1 cut(s) 592
HphI GGTGA 3 cut(s) 203, 433, 619
Hpy166II GTNNAC 3 cut(s) 31, 152, 589
Hpy188I TCNGA 2 cut(s) 10, 296
Hpy188III TCNNGA 1 cut(s) 576
Hpy8I GTNNAC 3 cut(s) 31, 152, 589
HpyAV CCTTC 3 cut(s) 242, 388, 573
HpyCH4III ACNGT 2 cut(s) 42, 493
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 5 cut(s) 152, 176, 323, 371, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 512
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 4 cut(s) 389, 407, 465, 668
HspAI GCGC 2 cut(s) 469, 595
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 114, 437, 646
LmnI GCTCC 3 cut(s) 143, 497, 520
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 14, 260
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 116, 439, 648
MboI GATC 3 cut(s) 114, 437, 646
MboII GAAGA 4 cut(s) 84, 87, 403, 641
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 3 cut(s) 154, 267, 502
MluCI AATT 7 cut(s) 23, 59, 63, 118, 196, 600, 612
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 3 cut(s) 298, 517, 598
MseI TTAA 5 cut(s) 62, 200, 240, 618, 659
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 3 cut(s) 49, 170, 251
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 3 cut(s) 49, 170, 251
MwoI GCNNNNNNNGC 2 cut(s) 368, 512
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 114, 437, 646
NlaIII CATG 4 cut(s) 389, 407, 465, 668
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 2 cut(s) 389, 407
PciI ACATGT 1 cut(s) 385
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 11, 281
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 1 cut(s) 460
PscI ACATGT 1 cut(s) 385
PshBI ATTAAT 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 47, 168, 249
PspGI CCWGG 3 cut(s) 47, 168, 249
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 30, 638
RsaNI GTAC 2 cut(s) 29, 637
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 502
SaqAI TTAA 5 cut(s) 62, 200, 240, 618, 659
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 3 cut(s) 114, 437, 646
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 638
ScrFI CCNGG 3 cut(s) 49, 170, 251
SduI GDGCHC 3 cut(s) 154, 267, 502
SfaNI GCATC 2 cut(s) 14, 260
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 7 cut(s) 23, 59, 63, 118, 196, 600, 612
SsiI CCGC 1 cut(s) 482
SspI AATATT 2 cut(s) 145, 159
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 3 cut(s) 47, 168, 249
TaaI ACNGT 2 cut(s) 42, 493
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 531
TasI AATT 7 cut(s) 23, 59, 63, 118, 196, 600, 612
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 11, 281
Tru1I TTAA 5 cut(s) 62, 200, 240, 618, 659
Tru9I TTAA 5 cut(s) 62, 200, 240, 618, 659
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 87, 681
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 554
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 62
XapI RAATTY 1 cut(s) 23
XceI RCATGY 2 cut(s) 389, 407
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.