RchiOBHm_Chr5g0056301

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
59896265 .. 59901751
5487 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33320

Sequence Viewer

Length: 1524 bp
ATGGAAATGAAGCAACTCACATTCTCACTCAAATCATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGACAATTTATACATGGTAACTATTGGACACAAGGCCGGCCCAGCGAAGCTTCATCATCTGCATTTGATCCCAAAGATTTTCAGAAATTTTACTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCAATACTCGCATACTTAGGCGCAGAAGAATCAGTTGATGTTGATATACCTATTATTGGGTTCCTATCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAGATTCTCATACATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGCCTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTCGATGACATTGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCAAGAAGCGAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATAATATTGCTTCTAAGCCTGAAGGCCTCTCAAATCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCAAGTCGTCTGACCTCAAGGACTACTTGGACTCGATGTATACTAGGGCAGCTCAATACGATCATCCACCGAATTATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTGCGGATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCGGTCATGCTATGTCAACCCGCCCAAAAACCTAACAGAAACAGACGAGGGGTGGGGATGGCAGACATGTAGTGACATGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATGTCGATGAATATATCAATAAATGCAAGGCAACCTATGGCGTCCCTCCCAGGCCTAATTGGGTGACTACATACTTTGGAGGCCATAACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTTGCTGTCCATGCAAAAAATGGGTCTCACTGCTTGGATATTCTCACCTCAAACCAGACTACCGATCCAGACTGGCTGGTCAATCAGCGGAAAAGTGAGGTCAAAATCATCGAAGGATGGATAGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

507

Amino Acids

56.75

Weight (kDa)

5.92

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 71 - 486 4.4e-71 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1007
AasI GACNNNNNNGTC 2 cut(s) 874, 1442
Acc36I ACCTGC 1 cut(s) 1007
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 908
AciI CCGC 5 cut(s) 963, 989, 1061, 1335, 1453
AclWI GGATC 3 cut(s) 173, 463, 1424
AcsI RAATTY 4 cut(s) 87, 197, 845, 1166
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 1 cut(s) 1212
AfaI GTAC 2 cut(s) 431, 1163
AfiI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
AflIII ACRYGT 2 cut(s) 544, 1106
AgeI ACCGGT 2 cut(s) 426, 1041
AgsI TTSAA 7 cut(s) 229, 250, 260, 401, 502, 746, 1511
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 1220
AluBI AGCT 9 cut(s) 161, 246, 515, 659, 674, 920, 980, 1490, 1514
AluI AGCT 9 cut(s) 161, 246, 515, 659, 674, 920, 980, 1490, 1514
Alw21I GWGCWC 3 cut(s) 313, 426, 661
Alw26I GTCTC 4 cut(s) 752, 1277, 1311, 1395
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 3 cut(s) 173, 463, 1424
AoxI GGCC 6 cut(s) 145, 149, 663, 823, 1223, 1252
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 4 cut(s) 87, 197, 845, 1166
ArsI GACNNNNNNTTYG 4 cut(s) 1158, 1190, 1373, 1405
AsiGI ACCGGT 2 cut(s) 426, 1041
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 724, 1132, 1246, 1402
AsuNHI GCTAGC 1 cut(s) 1286
BaeGI GKGCMC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 661
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 3 cut(s) 313, 426, 661
BbvI GCAGC 1 cut(s) 929
BccI CCATC 3 cut(s) 968, 1092, 1476
BciT130I CCWGG 1 cut(s) 1222
BciVI GTATCC 3 cut(s) 488, 648, 710
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BfaI CTAG 2 cut(s) 912, 1287
BfmI CTRYAG 2 cut(s) 516, 954
BfuAI ACCTGC 1 cut(s) 1007
BfuI GTATCC 3 cut(s) 488, 648, 710
BisI GCNGC 2 cut(s) 918, 1336
BlsI GCNGC 2 cut(s) 919, 1337
Bme1390I CCNGG 1 cut(s) 1222
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 298, 374
BmrFI CCNGG 1 cut(s) 1222
BmtI GCTAGC 1 cut(s) 1290
BpiI GAAGAC 1 cut(s) 1353
BpmI CTGGAG 4 cut(s) 129, 392, 690, 1261
BpuEI CTTGAG 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 1212
BsaI GGTCTC 2 cut(s) 1311, 1395
BsaJI CCNNGG 3 cut(s) 92, 735, 1220
BsaWI WCCGGW 5 cut(s) 426, 577, 946, 1034, 1041
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
Bse118I RCCGGY 3 cut(s) 147, 426, 1041
Bse1I ACTGG 2 cut(s) 112, 1442
BseBI CCWGG 1 cut(s) 1222
BseDI CCNNGG 3 cut(s) 92, 735, 1220
BseGI GGATG 5 cut(s) 35, 931, 997, 1103, 1487
BseLI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
BseMII CTCAG 4 cut(s) 87, 89, 519, 1259
BseNI ACTGG 2 cut(s) 112, 1442
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 929
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 6 cut(s) 147, 151, 665, 825, 1225, 1254
BshTI ACCGGT 2 cut(s) 426, 1041
BsiHKAI GWGCWC 3 cut(s) 313, 426, 661
BsiSI CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
BslFI GGGAC 1 cut(s) 1199
BslI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1041
BsmAI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BsmFI GGGAC 1 cut(s) 1199
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 6 cut(s) 147, 151, 665, 825, 1225, 1254
Bso31I GGTCTC 2 cut(s) 1311, 1395
Bsp1286I GDGCHC 3 cut(s) 313, 426, 661
Bsp143I GATC 5 cut(s) 178, 273, 455, 928, 1429
BspACI CCGC 5 cut(s) 963, 989, 1061, 1335, 1453
BspANI GGCC 6 cut(s) 147, 151, 665, 825, 1225, 1254
BspCNI CTCAG 4 cut(s) 86, 90, 518, 1260
BspLI GGNNCC 2 cut(s) 298, 374
BspMI ACCTGC 1 cut(s) 1007
BspOI GCTAGC 1 cut(s) 1290
BspPI GGATC 3 cut(s) 173, 463, 1424
BspTNI GGTCTC 2 cut(s) 1311, 1395
BsrFI RCCGGY 3 cut(s) 147, 426, 1041
BsrI ACTGG 2 cut(s) 112, 1442
BssAI RCCGGY 3 cut(s) 147, 426, 1041
BssECI CCNNGG 3 cut(s) 92, 735, 1220
BssMI GATC 5 cut(s) 178, 273, 455, 928, 1429
BssNAI GTATAC 1 cut(s) 909
BssNI GRCGYC 1 cut(s) 1212
BssT1I CCWWGG 2 cut(s) 92, 735
Bst1107I GTATAC 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 1222
Bst4CI ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
BstACI GRCGYC 1 cut(s) 1212
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 4 cut(s) 149, 484, 615, 1288
BstDEI CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 1268, 1313
BstF5I GGATG 5 cut(s) 35, 931, 997, 1103, 1487
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 5 cut(s) 181, 276, 458, 931, 1432
BstMAI GTCTC 4 cut(s) 752, 1277, 1311, 1395
BstMBI GATC 5 cut(s) 178, 273, 455, 928, 1429
BstMWI GCNNNNNNNGC 6 cut(s) 153, 527, 656, 671, 986, 1376
BstNI CCWGG 1 cut(s) 1222
BstNSI RCATGY 3 cut(s) 548, 566, 1110
BstSCI CCNGG 1 cut(s) 1220
BstSFI CTRYAG 2 cut(s) 516, 954
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 929
BstV2I GAAGAC 1 cut(s) 1353
BstZ17I GTATAC 1 cut(s) 909
BsuI GTATCC 3 cut(s) 488, 648, 710
BsuRI GGCC 6 cut(s) 147, 151, 665, 825, 1225, 1254
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 5 cut(s) 35, 931, 997, 1103, 1487
BtsI GCAGTG 1 cut(s) 1393
BtsIMutI CAGTG 3 cut(s) 313, 1366, 1393
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 4 cut(s) 149, 484, 615, 1288
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 3 cut(s) 147, 426, 1041
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 1201
Csp6I GTAC 2 cut(s) 430, 1162
CspAI ACCGGT 2 cut(s) 426, 1041
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 9 cut(s) 125, 545, 563, 621, 1047, 1107, 1117, 1150, 1376
CviQI GTAC 2 cut(s) 430, 1162
DdeI CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 1268, 1313
DpnI GATC 5 cut(s) 180, 275, 457, 930, 1431
DpnII GATC 5 cut(s) 178, 273, 455, 928, 1429
DraI TTTAAA 1 cut(s) 475
DrdI GACNNNNNNGTC 2 cut(s) 874, 1442
DseDI GACNNNNNNGTC 2 cut(s) 874, 1442
Ecl136II GAGCTC 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 92, 735
Eco147I AGGCCT 2 cut(s) 825, 1225
Eco24I GRGCYC 1 cut(s) 661
Eco31I GGTCTC 2 cut(s) 1311, 1395
Eco53kI GAGCTC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 1220
EcoT14I CCWWGG 2 cut(s) 92, 735
EcoT38I GRGCYC 1 cut(s) 661
ErhI CCWWGG 2 cut(s) 92, 735
FaeI CATG 9 cut(s) 128, 548, 566, 624, 1050, 1110, 1120, 1153, 1379
FalI AAGNNNNNCTT 4 cut(s) 878, 910, 1306, 1338
FaqI GGGAC 1 cut(s) 1199
FatI CATG 9 cut(s) 124, 544, 562, 620, 1046, 1106, 1116, 1149, 1375
FauI CCCGC 1 cut(s) 1068
FauNDI CATATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 2 cut(s) 918, 1336
FokI GGATG 5 cut(s) 22, 918, 1004, 1110, 1494
FriOI GRGCYC 1 cut(s) 661
FseI GGCCGGCC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 918, 1336
FspBI CTAG 2 cut(s) 912, 1287
GlaI GCGC 1 cut(s) 334
GluI GCNGC 2 cut(s) 918, 1336
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 4 cut(s) 129, 392, 690, 1261
HaeIII GGCC 6 cut(s) 147, 151, 665, 825, 1225, 1254
HapII CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
HgaI GACGC 1 cut(s) 1201
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 1212
Hin1II CATG 9 cut(s) 128, 548, 566, 624, 1050, 1110, 1120, 1153, 1379
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 2 cut(s) 867, 1057
HindII GTYRAC 2 cut(s) 867, 1057
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 7 cut(s) 100, 341, 440, 535, 899, 1123, 1270
HpaII CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
HphI GGTGA 4 cut(s) 724, 1132, 1246, 1402
Hpy166II GTNNAC 5 cut(s) 311, 867, 909, 1057, 1138
Hpy188I TCNGA 7 cut(s) 195, 382, 455, 793, 851, 880, 1357
Hpy188III TCNNGA 5 cut(s) 409, 707, 746, 1278, 1433
Hpy8I GTNNAC 5 cut(s) 311, 867, 909, 1057, 1138
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 4 cut(s) 50, 815, 1472, 1517
HpyCH4III ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 9 cut(s) 173, 311, 482, 530, 858, 1016, 1028, 1197, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 527, 656, 671, 986, 1376
HpyF3I CTNAG 8 cut(s) 73, 98, 328, 505, 813, 836, 1268, 1313
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 1 cut(s) 1212
Hsp92II CATG 9 cut(s) 128, 548, 566, 624, 1050, 1110, 1120, 1153, 1379
HspAI GCGC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 178, 273, 455, 928, 1429
LmnI GCTCC 4 cut(s) 302, 656, 679, 977
Lsp1109I GCAGC 1 cut(s) 929
MaeI CTAG 2 cut(s) 912, 1287
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 6 cut(s) 64, 128, 730, 949, 1112, 1234
MalI GATC 5 cut(s) 180, 275, 457, 930, 1431
MboI GATC 5 cut(s) 178, 273, 455, 928, 1429
MboII GAAGA 2 cut(s) 350, 1358
MhlI GDGCHC 3 cut(s) 313, 426, 661
MlyI GAGTC 3 cut(s) 109, 893, 1279
MmeI TCCRAC 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 2 cut(s) 83, 474
MslI CAYNNNNRTG 2 cut(s) 291, 1133
MspA1I CMGCKG 1 cut(s) 1453
MspI CCGG 6 cut(s) 148, 427, 578, 947, 1035, 1042
MspR9I CCNGG 1 cut(s) 1222
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 1 cut(s) 1222
MwoI GCNNNNNNNGC 6 cut(s) 153, 527, 656, 671, 986, 1376
NaeI GCCGGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 601
NdeII GATC 5 cut(s) 178, 273, 455, 928, 1429
NgoMIV GCCGGC 1 cut(s) 147
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 9 cut(s) 128, 548, 566, 624, 1050, 1110, 1120, 1153, 1379
NlaIV GGNNCC 2 cut(s) 298, 374
NmuCI GTSAC 4 cut(s) 64, 730, 1112, 1234
NspI RCATGY 3 cut(s) 548, 566, 1110
PaqCI CACCTGC 1 cut(s) 1007
PceI AGGCCT 2 cut(s) 825, 1225
PciI ACATGT 2 cut(s) 544, 1106
PctI GAATGC 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 341, 440, 535, 1123
PflFI GACNNNGTC 1 cut(s) 871
PflMI CCANNNNNTGG 1 cut(s) 288
PinAI ACCGGT 2 cut(s) 426, 1041
PkrI GCNGC 2 cut(s) 919, 1337
PleI GAGTC 3 cut(s) 108, 893, 1278
PpsI GAGTC 3 cut(s) 108, 893, 1278
PscI ACATGT 2 cut(s) 544, 1106
Psp124BI GAGCTC 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 1220
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 1220
PspN4I GGNNCC 2 cut(s) 298, 374
PspPI GGNCC 1 cut(s) 150
PsyI GACNNNGTC 1 cut(s) 871
RigI GGCCGGCC 1 cut(s) 151
RsaI GTAC 2 cut(s) 431, 1163
RsaNI GTAC 2 cut(s) 430, 1162
RseI CAYNNNNRTG 2 cut(s) 291, 1133
SacI GAGCTC 1 cut(s) 661
SaqAI TTAA 2 cut(s) 83, 474
SatI GCNGC 2 cut(s) 918, 1336
Sau3AI GATC 5 cut(s) 178, 273, 455, 928, 1429
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 3 cut(s) 109, 893, 1279
ScrFI CCNGG 1 cut(s) 1222
SduI GDGCHC 3 cut(s) 313, 426, 661
SfcI CTRYAG 2 cut(s) 516, 954
SmiMI CAYNNNNRTG 2 cut(s) 291, 1133
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SseBI AGGCCT 2 cut(s) 825, 1225
SsiI CCGC 5 cut(s) 963, 989, 1061, 1335, 1453
SspI AATATT 2 cut(s) 805, 1011
SspMI CTAG 2 cut(s) 912, 1287
SstI GAGCTC 1 cut(s) 661
StuI AGGCCT 2 cut(s) 825, 1225
StyD4I CCNGG 1 cut(s) 1220
StyI CCWWGG 2 cut(s) 92, 735
TaaI ACNGT 5 cut(s) 864, 955, 1161, 1328, 1361
TaiI ACGT 1 cut(s) 648
TaqI TCGA 4 cut(s) 690, 902, 1176, 1476
TauI GCSGC 1 cut(s) 1338
TfiI GAWTC 4 cut(s) 341, 440, 535, 1123
Tru1I TTAA 2 cut(s) 83, 474
Tru9I TTAA 2 cut(s) 83, 474
TscAI CASTG 3 cut(s) 313, 1366, 1400
TseFI GTSAC 4 cut(s) 64, 730, 1112, 1234
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 4 cut(s) 64, 730, 1112, 1234
TspDTI ATGAA 5 cut(s) 23, 153, 609, 972, 1194
TspRI CASTG 3 cut(s) 313, 1366, 1400
Tth111I GACNNNGTC 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 4 cut(s) 87, 197, 845, 1166
XceI RCATGY 3 cut(s) 548, 566, 1110
XcmI CCANNNNNNNNNTGG 2 cut(s) 650, 1382
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 2 cut(s) 912, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.