Rw0G012700

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00564
Physical Location & Seq
Reverse (-)
204260 .. 207009
2750 bp
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UTR
Exon/CDS
Intron
Rw0G012700.1

Sequence Viewer

Length: 1305 bp
ATGAATCCACTTTTAGGTTCAGTTCTTCAATGCCTTGTCCTAATTATCTCTCGATTCGCCCTAACCTCTGGTTCTCTACACATTCCAAGGTTGAGTCCAATTAGACCAGGGATGTTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATTGCACCATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAAGCTCTCCTCATATATATAGAGCACCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGGACATTCTCCGGTCATTGTTATTGGTGCATATATGGTGGAAGTGATGCTTGCTTCATGGTTTCGGCTAAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCATCGGCTCCGATTCTTTACTTTGATGACATTATTCCGCCAGAAAATGGATACTTCTCCATTGTCACGAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATAAAACAGTCTTGGTCTGAAATTGATGCACTTGCTTCTATGCCTGATGCGCGGCATCCTATCTCAAATACTCCTGCAGTCAATGTACAGACGGCAGCTCAGTTCGATGATCCATCAACAAATCCAGTTAATATGATCTGCAATGGTATTGATGGAGCTTCTTCAACTAATGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACTCATGCTACCTTAATGATACACCCAGTAGTACTAATGCATTACCAAGCAGTACTAACGATGATGAAACATCTTTGGGATGGAGTTGGCAGGCACAGTATGGCGTCCCTTCTCGCCCTAATTGGGTCACTACATATTACGGAGGCCATGTATATTCGCTAGTAATCATTTTCTCTAATGGGCTCAGAGATCCTTACAGCAGTGGCGGGGTATTGCAAAATATATCAGACAGTCTTGTCGCAGTCTATACAAACAATGGGTCTCATTGCCTAGATATAGTTCCATCAACTAGTACCGATCCAGACTGGTTGGTCAATCAGCGGAAAATGGGAGGTCGAGATTATCAAAAAATGGATGACCGCGTACTATGCTGA

Protein Analysis

434

Amino Acids

47.91

Weight (kDa)

4.98

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 62 - 259 2.4e-36 Serine carboxypeptidase S28
Peptidase_S28 PF05577 350 - 420 2.7e-09 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1166, 1241
AccB7I CCANNNNNTGG 1 cut(s) 650
AccII CGCG 2 cut(s) 763, 1293
AciI CCGC 5 cut(s) 641, 763, 1137, 1252, 1291
AclWI GGATC 4 cut(s) 463, 815, 1115, 1223
AcuI CTGAAG 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 1035
AfaI GTAC 6 cut(s) 365, 798, 964, 985, 1225, 1296
AfiI CCNNNNNNNGG 3 cut(s) 14, 650, 1054
AflIII ACRYGT 1 cut(s) 478
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 7 cut(s) 29, 202, 233, 335, 410, 436, 876
AhlI ACTAGT 1 cut(s) 1220
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 9 cut(s) 137, 219, 338, 449, 596, 602, 689, 809, 869
AluI AGCT 9 cut(s) 137, 219, 338, 449, 596, 602, 689, 809, 869
Alw21I GWGCWC 2 cut(s) 360, 598
Alw26I GTCTC 2 cut(s) 689, 1197
AlwI GGATC 4 cut(s) 463, 815, 1115, 1223
AoxI GGCC 2 cut(s) 907, 1075
ApeKI GCWGC 1 cut(s) 806
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 1175, 1207
AsiGI ACCGGT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 269, 763
BanII GRGCYC 2 cut(s) 598, 1116
Bbv12I GWGCWC 2 cut(s) 360, 598
BbvI GCAGC 1 cut(s) 818
BccI CCATC 4 cut(s) 832, 857, 1005, 1222
BceAI ACGGC 1 cut(s) 819
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 647
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 689, 1197
BcuI ACTAGT 1 cut(s) 1220
BfaI CTAG 7 cut(s) 393, 452, 599, 690, 1091, 1202, 1221
BfmI CTRYAG 1 cut(s) 786
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 2 cut(s) 764, 807
BlsI GCNGC 2 cut(s) 765, 808
BmcAI AGTACT 2 cut(s) 964, 985
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 5 cut(s) 142, 537, 727, 748, 775
BmuI ACTGGG 1 cut(s) 951
BsaHI GRCGYC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 1197
BsaJI CCNNGG 3 cut(s) 86, 107, 262
BsaWI WCCGGW 2 cut(s) 360, 511
BsaXI ACNNNNNCTCC 2 cut(s) 1065, 1095
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 650, 1054
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 4 cut(s) 307, 836, 957, 1241
Bse3DI GCAATG 2 cut(s) 859, 1195
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 86, 107, 262
BseGI GGATG 4 cut(s) 117, 766, 1016, 1291
BseLI CCNNNNNNNGG 3 cut(s) 14, 650, 1054
BseMI GCAATG 2 cut(s) 859, 1195
BseMII CTCAG 4 cut(s) 453, 456, 824, 1129
BseNI ACTGG 4 cut(s) 307, 836, 957, 1241
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 818
Bsh1236I CGCG 2 cut(s) 763, 1293
BshFI GGCC 2 cut(s) 909, 1077
BshTI ACCGGT 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 360, 598
BsiSI CCGG 2 cut(s) 361, 512
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 14, 650, 1054
BsmAI GTCTC 2 cut(s) 689, 1197
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 2 cut(s) 909, 1077
Bso31I GGTCTC 1 cut(s) 1197
Bsp1286I GDGCHC 3 cut(s) 360, 598, 1116
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
BspACI CCGC 5 cut(s) 641, 763, 1137, 1252, 1291
BspANI GGCC 2 cut(s) 909, 1077
BspCNI CTCAG 4 cut(s) 452, 457, 823, 1128
BspFNI CGCG 2 cut(s) 763, 1293
BspLI GGNNCC 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 4 cut(s) 463, 815, 1115, 1223
BspTNI GGTCTC 1 cut(s) 1197
BsrDI GCAATG 2 cut(s) 859, 1195
BsrFI RCCGGY 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 4 cut(s) 307, 836, 957, 1241
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 3 cut(s) 86, 107, 262
BssMI GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
BssNI GRCGYC 1 cut(s) 1035
BssT1I CCWWGG 2 cut(s) 86, 262
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 720, 1029, 1163
BstACI GRCGYC 1 cut(s) 1035
BstAPI GCANNNNNTGC 2 cut(s) 152, 461
BstAUI TGTACA 1 cut(s) 796
BstC8I GCNNGC 4 cut(s) 418, 552, 907, 1023
BstDEI CTNAG 4 cut(s) 439, 465, 810, 1115
BstF5I GGATG 4 cut(s) 117, 766, 1016, 1291
BstFNI CGCG 2 cut(s) 763, 1293
BstHHI GCGC 2 cut(s) 269, 763
BstKTI GATC 7 cut(s) 122, 196, 471, 823, 849, 1123, 1231
BstMAI GTCTC 2 cut(s) 689, 1197
BstMBI GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
BstMWI GCNNNNNNNGC 8 cut(s) 143, 152, 426, 461, 593, 608, 760, 1299
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 786
BstUI CGCG 2 cut(s) 763, 1293
BstV1I GCAGC 1 cut(s) 818
BstX2I RGATCY 2 cut(s) 468, 1120
BstYI RGATCY 2 cut(s) 468, 1120
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 2 cut(s) 909, 1077
BtsCI GGATG 4 cut(s) 117, 766, 1016, 1291
BtsI GCAGTG 1 cut(s) 1138
BtsIMutI CAGTG 1 cut(s) 1138
Cac8I GCNNGC 4 cut(s) 418, 552, 907, 1023
CfoI GCGC 2 cut(s) 269, 763
Cfr10I RCCGGY 1 cut(s) 360
CseI GACGC 2 cut(s) 496, 1024
Csp6I GTAC 6 cut(s) 364, 797, 963, 984, 1224, 1295
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 4 cut(s) 479, 558, 936, 1079
CviQI GTAC 6 cut(s) 364, 797, 963, 984, 1224, 1295
DdeI CTNAG 4 cut(s) 439, 465, 810, 1115
DpnI GATC 7 cut(s) 121, 195, 470, 822, 848, 1122, 1230
DpnII GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
DrdI GACNNNNNNGTC 2 cut(s) 1166, 1241
DseDI GACNNNNNNGTC 2 cut(s) 1166, 1241
EciI GGCGGA 1 cut(s) 630
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 86, 262
Eco24I GRGCYC 2 cut(s) 598, 1116
Eco31I GGTCTC 1 cut(s) 1197
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 86, 262
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 2 cut(s) 598, 1116
ErhI CCWWGG 2 cut(s) 86, 262
FaeI CATG 4 cut(s) 482, 561, 939, 1082
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 1022
FatI CATG 4 cut(s) 478, 557, 935, 1078
FauI CCCGC 1 cut(s) 1130
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 764, 807
FokI GGATG 4 cut(s) 124, 753, 1023, 1298
FriOI GRGCYC 2 cut(s) 598, 1116
Fsp4HI GCNGC 2 cut(s) 764, 807
FspBI CTAG 7 cut(s) 393, 452, 599, 690, 1091, 1202, 1221
GlaI GCGC 2 cut(s) 268, 762
GluI GCNGC 2 cut(s) 764, 807
HaeIII GGCC 2 cut(s) 909, 1077
HapII CCGG 2 cut(s) 361, 512
HgaI GACGC 2 cut(s) 496, 1024
HhaI GCGC 2 cut(s) 269, 763
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 4 cut(s) 482, 561, 939, 1082
Hin6I GCGC 2 cut(s) 267, 761
HinP1I GCGC 2 cut(s) 267, 761
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 5 cut(s) 4, 54, 94, 374, 616
HpaII CCGG 2 cut(s) 361, 512
Hpy188I TCNGA 5 cut(s) 209, 615, 730, 1118, 1159
Hpy188III TCNNGA 6 cut(s) 51, 393, 670, 683, 1232, 1268
HpyAV CCTTC 2 cut(s) 667, 1050
HpyCH4III ACNGT 3 cut(s) 720, 1029, 1163
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 152, 426, 461, 593, 608, 760, 1299
HpyF3I CTNAG 4 cut(s) 439, 465, 810, 1115
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 4 cut(s) 482, 561, 939, 1082
HspAI GCGC 2 cut(s) 267, 761
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
LmnI GCTCC 3 cut(s) 593, 616, 866
Lsp1109I GCAGC 1 cut(s) 818
LweI GCATC 5 cut(s) 142, 537, 727, 748, 775
MaeI CTAG 7 cut(s) 393, 452, 599, 690, 1091, 1202, 1221
MaeIII GTNAC 2 cut(s) 667, 1057
MalI GATC 7 cut(s) 121, 195, 470, 822, 848, 1122, 1230
MboI GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
MboII GAAGA 2 cut(s) 17, 864
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 2 cut(s) 468, 1120
MhlI GDGCHC 3 cut(s) 360, 598, 1116
MluCI AATT 5 cut(s) 42, 99, 732, 918, 1051
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 5 cut(s) 76, 353, 482, 1067, 1256
Mph1103I ATGCAT 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 840, 945
MspA1I CMGCKG 1 cut(s) 1252
MspI CCGG 2 cut(s) 361, 512
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 918
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 763, 1293
MwoI GCNNNNNNNGC 8 cut(s) 143, 152, 426, 461, 593, 608, 760, 1299
NdeII GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
NlaIII CATG 4 cut(s) 482, 561, 939, 1082
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 2 cut(s) 667, 1057
NsiI ATGCAT 1 cut(s) 973
NspI RCATGY 1 cut(s) 482
PciI ACATGT 1 cut(s) 478
PctI GAATGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 4 cut(s) 4, 54, 374, 616
PflMI CCANNNNNTGG 1 cut(s) 650
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 2 cut(s) 765, 808
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 478
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 612
PstI CTGCAG 1 cut(s) 790
PsuI RGATCY 2 cut(s) 468, 1120
RsaI GTAC 6 cut(s) 365, 798, 964, 985, 1225, 1296
RsaNI GTAC 6 cut(s) 364, 797, 963, 984, 1224, 1295
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 840, 945
SatI GCNGC 2 cut(s) 764, 807
Sau3AI GATC 7 cut(s) 119, 193, 468, 820, 846, 1120, 1228
ScaI AGTACT 2 cut(s) 964, 985
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 3 cut(s) 360, 598, 1116
SfaNI GCATC 5 cut(s) 142, 537, 727, 748, 775
SfcI CTRYAG 1 cut(s) 786
SpeI ACTAGT 1 cut(s) 1220
Sse9I AATT 5 cut(s) 42, 99, 732, 918, 1051
SsiI CCGC 5 cut(s) 641, 763, 1137, 1252, 1291
SspI AATATT 2 cut(s) 242, 900
SspMI CTAG 7 cut(s) 393, 452, 599, 690, 1091, 1202, 1221
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 86, 262
TaaI ACNGT 3 cut(s) 720, 1029, 1163
TaqI TCGA 6 cut(s) 52, 118, 131, 682, 816, 1267
TasI AATT 5 cut(s) 42, 99, 732, 918, 1051
TatI WGTACW 3 cut(s) 796, 962, 983
TauI GCSGC 1 cut(s) 766
TfiI GAWTC 4 cut(s) 4, 54, 374, 616
Tru1I TTAA 2 cut(s) 840, 945
Tru9I TTAA 2 cut(s) 840, 945
TscAI CASTG 1 cut(s) 1138
TseFI GTSAC 2 cut(s) 667, 1057
TseI GCWGC 1 cut(s) 806
Tsp45I GTSAC 2 cut(s) 667, 1057
TspDTI ATGAA 4 cut(s) 17, 546, 594, 1011
TspGWI ACGGA 2 cut(s) 384, 1086
TspRI CASTG 1 cut(s) 1138
Van91I CCANNNNNTGG 1 cut(s) 650
XbaI TCTAGA 1 cut(s) 392
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 7 cut(s) 393, 452, 599, 690, 1091, 1202, 1221
ZrmI AGTACT 2 cut(s) 964, 985
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.