Rh5DG393300

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
61622689 .. 61625958
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG393300.1

Sequence Viewer

Length: 1422 bp
ATGGCATTCGAAACACAACTGCTGCCCTCCAAGGATTTGCCATACCATGGAAATGAAGCGACTGACATTCTCACTCCAATCATCCCTTCTAGTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCAATTCTCGCTTACTTAGGCGCAGAAGAGTCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCCAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATTCATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGACTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTCGATGACATTGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCAAGAAGCGAGTGAGACTTGCTACCAAATCATAAAAAAGTCTTGGTCTGAAATTGATAATATTGCTTCTAAGCGTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCAAACTTGCAGACCGTTGACCAAGTCGTCTGAGCTCAAGGACTACTTGAAGTCGATGTATGCTAGGGCAGCTCAATATGATCGTCCACCGAAATATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGGTGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCGGTCATGCTATGTCAACCGGCCCAGAAACCTAACAGAAACAGACGTGGGGTGGCGATGGCAGACATGTAGCGACTTGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATGTCGATGAATATATCAATAAATGCAAGGCAACCTATGGCGTCCCTCCCAGACCTAATTGGGTGACTACATACTTTGGAGGCCATGACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTCTGGTTGCTGTCCATGCAAAAAATGGTATGTATCCTTCCAAATTCATTTGTTTGGAGTACCCCATGTTACGAGTTTTAGGGCAATACATATTTTCCTTTAACTTTTCAACTACCCAAAATTAA

Protein Analysis

473

Amino Acids

53.11

Weight (kDa)

6.6

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 63 - 438 8e-63 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 944
AasI GACNNNNNNGTC 1 cut(s) 811
Acc36I ACCTGC 1 cut(s) 944
AccB7I CCANNNNNTGG 2 cut(s) 47, 225
AciI CCGC 2 cut(s) 900, 1272
AclWI GGATC 2 cut(s) 387, 400
AcsI RAATTY 5 cut(s) 133, 471, 782, 1103, 1340
AcyI GRCGYC 1 cut(s) 1149
AfaI GTAC 3 cut(s) 368, 1100, 1358
AfiI CCNNNNNNNGG 6 cut(s) 47, 156, 225, 305, 650, 978
AflIII ACRYGT 1 cut(s) 1043
AgeI ACCGGT 2 cut(s) 363, 978
AgsI TTSAA 7 cut(s) 187, 197, 338, 439, 683, 835, 1407
AjiI CACGTC 2 cut(s) 583, 1024
AjnI CCWGG 1 cut(s) 395
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 7 cut(s) 183, 452, 596, 611, 820, 857, 917
AluI AGCT 7 cut(s) 183, 452, 596, 611, 820, 857, 917
Alw21I GWGCWC 4 cut(s) 250, 363, 598, 822
Alw26I GTCTC 3 cut(s) 689, 1214, 1248
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 2 cut(s) 387, 400
AoxI GGCC 4 cut(s) 600, 760, 998, 1189
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 22, 854
ApoI RAATTY 5 cut(s) 133, 471, 782, 1103, 1340
ArsI GACNNNNNNTTYG 2 cut(s) 1095, 1127
AsiGI ACCGGT 2 cut(s) 363, 978
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 999
AsuHPI GGTGA 4 cut(s) 661, 941, 1069, 1183
AsuII TTCGAA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 1223
BaeGI GKGCMC 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 557, 590
BamHI GGATCC 1 cut(s) 392
BanII GRGCYC 2 cut(s) 598, 822
BarI GAAGNNNNNNTAC 4 cut(s) 167, 199, 1318, 1350
BbsI GAAGAC 1 cut(s) 1290
Bbv12I GWGCWC 4 cut(s) 250, 363, 598, 822
BbvI GCAGC 2 cut(s) 9, 866
BccI CCATC 2 cut(s) 905, 1029
BciT130I CCWGG 1 cut(s) 397
BciVI GTATCC 4 cut(s) 425, 585, 647, 1341
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 689, 1214, 1248
BfaI CTAG 3 cut(s) 90, 849, 1224
BfmI CTRYAG 3 cut(s) 453, 891, 924
BfuAI ACCTGC 1 cut(s) 944
BfuI GTATCC 4 cut(s) 425, 585, 647, 1341
BisI GCNGC 3 cut(s) 23, 855, 1273
BlsI GCNGC 3 cut(s) 24, 856, 1274
Bme1390I CCNGG 1 cut(s) 397
BmgBI CACGTC 2 cut(s) 583, 1024
BmgT120I GGNCC 1 cut(s) 999
BmiI GGNNCC 3 cut(s) 235, 311, 394
BmrFI CCNGG 1 cut(s) 397
BmtI GCTAGC 1 cut(s) 1227
BpiI GAAGAC 1 cut(s) 1290
BpmI CTGGAG 4 cut(s) 175, 329, 627, 1198
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 751, 806
BsaHI GRCGYC 1 cut(s) 1149
BsaI GGTCTC 1 cut(s) 1248
BsaJI CCNNGG 5 cut(s) 30, 46, 138, 396, 672
BsaWI WCCGGW 5 cut(s) 363, 514, 883, 971, 978
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 156, 225, 305, 650, 978
Bse118I RCCGGY 3 cut(s) 363, 978, 996
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 5 cut(s) 30, 46, 138, 396, 672
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 6 cut(s) 47, 156, 225, 305, 650, 978
BseMII CTCAG 5 cut(s) 133, 135, 456, 807, 1196
BseNI ACTGG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 2 cut(s) 9, 866
BshFI GGCC 4 cut(s) 602, 762, 1000, 1191
BshTI ACCGGT 2 cut(s) 363, 978
BsiHKAI GWGCWC 4 cut(s) 250, 363, 598, 822
BsiSI CCGG 6 cut(s) 364, 515, 884, 972, 979, 997
BslFI GGGAC 1 cut(s) 1136
BslI CCNNNNNNNGG 6 cut(s) 47, 156, 225, 305, 650, 978
BsmAI GTCTC 3 cut(s) 689, 1214, 1248
BsmFI GGGAC 1 cut(s) 1136
BsmI GAATGC 2 cut(s) 5, 552
BsnI GGCC 4 cut(s) 602, 762, 1000, 1191
Bso31I GGTCTC 1 cut(s) 1248
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 4 cut(s) 250, 363, 598, 822
Bsp143I GATC 3 cut(s) 210, 392, 865
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 2 cut(s) 900, 1272
BspANI GGCC 4 cut(s) 602, 762, 1000, 1191
BspCNI CTCAG 5 cut(s) 132, 136, 455, 808, 1197
BspLI GGNNCC 3 cut(s) 235, 311, 394
BspMI ACCTGC 1 cut(s) 944
BspOI GCTAGC 1 cut(s) 1227
BspPI GGATC 2 cut(s) 387, 400
BspT104I TTCGAA 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 1248
BsrFI RCCGGY 3 cut(s) 363, 978, 996
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 3 cut(s) 363, 978, 996
BssECI CCNNGG 5 cut(s) 30, 46, 138, 396, 672
BssMI GATC 3 cut(s) 210, 392, 865
BssNI GRCGYC 1 cut(s) 1149
BssT1I CCWWGG 4 cut(s) 30, 46, 138, 672
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 5 cut(s) 801, 892, 1098, 1265, 1298
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 1149
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 421, 552, 1225
BstDEI CTNAG 9 cut(s) 119, 144, 265, 442, 750, 773, 816, 1205, 1250
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 3 cut(s) 213, 395, 868
BstMAI GTCTC 3 cut(s) 689, 1214, 1248
BstMBI GATC 3 cut(s) 210, 392, 865
BstMWI GCNNNNNNNGC 5 cut(s) 464, 593, 608, 854, 1313
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 2 cut(s) 503, 1047
BstSCI CCNGG 1 cut(s) 395
BstSFI CTRYAG 3 cut(s) 453, 891, 924
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 9, 866
BstV2I GAAGAC 1 cut(s) 1290
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 392
BsuI GTATCC 4 cut(s) 425, 585, 647, 1341
BsuRI GGCC 4 cut(s) 602, 762, 1000, 1191
BtgI CCRYGG 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 1048
BtrI CACGTC 2 cut(s) 583, 1024
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 944
Cac8I GCNNGC 3 cut(s) 421, 552, 1225
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 3 cut(s) 363, 978, 996
Cfr13I GGNCC 1 cut(s) 999
CseI GACGC 1 cut(s) 1138
Csp6I GTAC 3 cut(s) 367, 1099, 1357
CspAI ACCGGT 2 cut(s) 363, 978
CviQI GTAC 3 cut(s) 367, 1099, 1357
DdeI CTNAG 9 cut(s) 119, 144, 265, 442, 750, 773, 816, 1205, 1250
DpnI GATC 3 cut(s) 212, 394, 867
DpnII GATC 3 cut(s) 210, 392, 865
DraI TTTAAA 1 cut(s) 412
DrdI GACNNNNNNGTC 1 cut(s) 811
DseDI GACNNNNNNGTC 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Ecl136II GAGCTC 2 cut(s) 596, 820
Eco130I CCWWGG 4 cut(s) 30, 46, 138, 672
Eco147I AGGCCT 1 cut(s) 762
Eco24I GRGCYC 2 cut(s) 598, 822
Eco31I GGTCTC 1 cut(s) 1248
Eco53kI GAGCTC 2 cut(s) 596, 820
EcoICRI GAGCTC 2 cut(s) 596, 820
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 4 cut(s) 30, 46, 138, 672
EcoT38I GRGCYC 2 cut(s) 598, 822
ErhI CCWWGG 4 cut(s) 30, 46, 138, 672
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 1243, 1275
FaqI GGGAC 1 cut(s) 1136
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 23, 855, 1273
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 598, 822
Fsp4HI GCNGC 3 cut(s) 23, 855, 1273
FspBI CTAG 3 cut(s) 90, 849, 1224
GlaI GCGC 1 cut(s) 271
GluI GCNGC 3 cut(s) 23, 855, 1273
GsuI CTGGAG 4 cut(s) 175, 329, 627, 1198
HaeIII GGCC 4 cut(s) 602, 762, 1000, 1191
HapII CCGG 6 cut(s) 364, 515, 884, 972, 979, 997
HgaI GACGC 1 cut(s) 1138
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 1149
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 2 cut(s) 804, 994
HindII GTYRAC 2 cut(s) 804, 994
HinfI GANTC 5 cut(s) 146, 278, 377, 1060, 1207
HpaII CCGG 6 cut(s) 364, 515, 884, 972, 979, 997
HphI GGTGA 4 cut(s) 661, 941, 1069, 1183
Hpy166II GTNNAC 5 cut(s) 248, 804, 872, 994, 1075
Hpy188I TCNGA 4 cut(s) 392, 730, 817, 1294
Hpy188III TCNNGA 4 cut(s) 346, 644, 683, 1215
Hpy8I GTNNAC 5 cut(s) 248, 804, 872, 994, 1075
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 3 cut(s) 96, 752, 1344
HpyCH4III ACNGT 5 cut(s) 801, 892, 1098, 1265, 1298
HpyCH4IV ACGT 2 cut(s) 582, 1023
HpyCH4V TGCA 8 cut(s) 248, 419, 467, 795, 953, 965, 1134, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 593, 608, 854, 1313
HpyF3I CTNAG 9 cut(s) 119, 144, 265, 442, 750, 773, 816, 1205, 1250
HpySE526I ACGT 2 cut(s) 582, 1023
Hsp92I GRCGYC 1 cut(s) 1149
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 3 cut(s) 210, 392, 865
LmnI GCTCC 4 cut(s) 239, 593, 616, 914
Lsp1109I GCAGC 2 cut(s) 9, 866
MaeI CTAG 3 cut(s) 90, 849, 1224
MaeII ACGT 2 cut(s) 582, 1023
MaeIII GTNAC 5 cut(s) 110, 667, 886, 1171, 1365
MalI GATC 3 cut(s) 212, 394, 867
MboI GATC 3 cut(s) 210, 392, 865
MboII GAAGA 2 cut(s) 287, 1295
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 4 cut(s) 250, 363, 598, 822
MlyI GAGTC 3 cut(s) 155, 287, 1216
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 37, 128, 150, 353, 613, 651, 773, 1164, 1181
MseI TTAA 4 cut(s) 129, 411, 1398, 1420
MslI CAYNNNNRTG 3 cut(s) 51, 228, 1070
MspI CCGG 6 cut(s) 364, 515, 884, 972, 979, 997
MspR9I CCNGG 1 cut(s) 397
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 5, 552
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 5 cut(s) 464, 593, 608, 854, 1313
NcoI CCATGG 1 cut(s) 46
NdeI CATATG 1 cut(s) 538
NdeII GATC 3 cut(s) 210, 392, 865
NheI GCTAGC 1 cut(s) 1223
NlaIV GGNNCC 3 cut(s) 235, 311, 394
NmuCI GTSAC 3 cut(s) 110, 667, 1171
NspI RCATGY 2 cut(s) 503, 1047
NspV TTCGAA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 944
PceI AGGCCT 1 cut(s) 762
PciI ACATGT 1 cut(s) 1043
PctI GAATGC 2 cut(s) 5, 552
PfeI GAWTC 2 cut(s) 377, 1060
PflFI GACNNNGTC 1 cut(s) 808
PflMI CCANNNNNTGG 2 cut(s) 47, 225
PinAI ACCGGT 2 cut(s) 363, 978
PkrI GCNGC 3 cut(s) 24, 856, 1274
PleI GAGTC 3 cut(s) 154, 286, 1215
PpsI GAGTC 3 cut(s) 154, 286, 1215
PscI ACATGT 1 cut(s) 1043
Psp124BI GAGCTC 2 cut(s) 598, 822
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 3 cut(s) 235, 311, 394
PspPI GGNCC 1 cut(s) 999
PsuI RGATCY 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 3 cut(s) 368, 1100, 1358
RsaNI GTAC 3 cut(s) 367, 1099, 1357
RseI CAYNNNNRTG 3 cut(s) 51, 228, 1070
SacI GAGCTC 2 cut(s) 598, 822
SaqAI TTAA 4 cut(s) 129, 411, 1398, 1420
SatI GCNGC 3 cut(s) 23, 855, 1273
Sau3AI GATC 3 cut(s) 210, 392, 865
Sau96I GGNCC 1 cut(s) 999
SchI GAGTC 3 cut(s) 155, 287, 1216
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 4 cut(s) 250, 363, 598, 822
SfcI CTRYAG 3 cut(s) 453, 891, 924
SfuI TTCGAA 1 cut(s) 9
SmiMI CAYNNNNRTG 3 cut(s) 51, 228, 1070
SmlI CTYRAG 2 cut(s) 766, 821
SmoI CTYRAG 2 cut(s) 766, 821
SseBI AGGCCT 1 cut(s) 762
SsiI CCGC 2 cut(s) 900, 1272
SspI AATATT 2 cut(s) 742, 948
SspMI CTAG 3 cut(s) 90, 849, 1224
SstI GAGCTC 2 cut(s) 598, 822
StuI AGGCCT 1 cut(s) 762
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 4 cut(s) 30, 46, 138, 672
TaaI ACNGT 5 cut(s) 801, 892, 1098, 1265, 1298
TaiI ACGT 2 cut(s) 585, 1026
TaqI TCGA 5 cut(s) 9, 565, 627, 839, 1113
TauI GCSGC 1 cut(s) 1275
TfiI GAWTC 2 cut(s) 377, 1060
Tru1I TTAA 4 cut(s) 129, 411, 1398, 1420
Tru9I TTAA 4 cut(s) 129, 411, 1398, 1420
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 3 cut(s) 110, 667, 1171
TseI GCWGC 2 cut(s) 22, 854
Tsp45I GTSAC 3 cut(s) 110, 667, 1171
TspDTI ATGAA 6 cut(s) 69, 470, 546, 909, 1131, 1333
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 808
Van91I CCANNNNNTGG 2 cut(s) 47, 225
VneI GTGCAC 1 cut(s) 246
XapI RAATTY 5 cut(s) 133, 471, 782, 1103, 1340
XceI RCATGY 2 cut(s) 503, 1047
XcmI CCANNNNNNNNNTGG 2 cut(s) 587, 1319
XspI CTAG 3 cut(s) 90, 849, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.