Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

34328792 .. 34329070

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGTCGCTTGGCATCGGGTTCCCGTGCGTTCTTTGGTACTGGGTTGTTGTCACCTCTTCTAGATGCATCGGTCTTCATTGCCCTTGTGGCGTCGCGGGCTCTGCAATTGTCATGGCATTGGATGCTCGGGTGTTTTCAACCCGATTTGGGTCGGATCTTCTGATGTTTTCCTATGTTGGTGACTTCTGGATTGTTGACGGCGTCTGGGCTTTGGTGGTGGAGGCGAGAGTACTGGTTGGCGCCTGCGGCAGCATCCTAGAGGGGCTGTGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

92

Amino Acids

9.85

Weight (kDa)

4.65

Isoelectric Point (pI)

16.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	98
AciI	CCGC	2 cut(s)	98, 249
AclWI	GGATC	1 cut(s)	165
AcyI	GRCGYC	3 cut(s)	93, 204, 243
AfaI	GTAC	2 cut(s)	41, 234
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	141
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	46, 194
AvaI	CYCGRG	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	217
BfaI	CTAG	2 cut(s)	63, 260
BfoI	RGCGCY	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	2 cut(s)	250, 253
BlsI	GCNGC	2 cut(s)	251, 254
BmcAI	AGTACT	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	23, 244
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	5 cut(s)	24, 56, 78, 115, 264
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	68
BsaHI	GRCGYC	3 cut(s)	93, 204, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	47, 240
Bse3DI	GCAATG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	130, 255
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	47, 240
BseXI	GCAGC	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	98, 249
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	23, 244
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	47, 240
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	3 cut(s)	93, 204, 243
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	3 cut(s)	93, 204, 243
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	100, 247
BstF5I	GGATG	2 cut(s)	130, 255
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 99, 104, 125, 249
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	130, 255
Cac8I	GCNNGC	2 cut(s)	100, 247
CfoI	GCGC	1 cut(s)	245
CseI	GACGC	2 cut(s)	82, 193
Csp6I	GTAC	2 cut(s)	40, 233
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	102, 212, 268
CviKI_1	RGCY	3 cut(s)	102, 212, 268
CviQI	GTAC	2 cut(s)	40, 233
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 177
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	250, 253
FokI	GGATG	2 cut(s)	137, 242
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	250, 253
FspBI	CTAG	2 cut(s)	63, 260
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	250, 253
HaeII	RGCGCY	1 cut(s)	246
HgaI	GACGC	2 cut(s)	82, 193
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	3 cut(s)	93, 204, 243
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	46, 194
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	157, 165
Hpy188III	TCNNGA	2 cut(s)	63, 190
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	69, 107
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 99, 104, 125, 249
Hsp92I	GRCGYC	3 cut(s)	93, 204, 243
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	28, 175, 193, 221, 259
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	5 cut(s)	24, 56, 78, 115, 264
MaeI	CTAG	2 cut(s)	63, 260
MaeIII	GTNAC	2 cut(s)	52, 182
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	51, 68, 152
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	108
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	67, 217, 256
Mph1103I	ATGCAT	1 cut(s)	71
MunI	CAATTG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	90, 99, 104, 125, 249
NarI	GGCGCC	1 cut(s)	243
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	23, 244
NmuCI	GTSAC	2 cut(s)	52, 182
NsiI	ATGCAT	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	251, 254
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	23, 244
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	2 cut(s)	41, 234
RsaNI	GTAC	2 cut(s)	40, 233
SatI	GCNGC	2 cut(s)	250, 253
Sau3AI	GATC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	1 cut(s)	59
SfaNI	GCATC	5 cut(s)	24, 56, 78, 115, 264
SfoI	GGCGCC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	98, 249
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	63, 260
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	52, 182
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	2 cut(s)	52, 182
TspDTI	ATGAA	1 cut(s)	68
Tth111I	GACNNNGTC	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	62
XspI	CTAG	2 cut(s)	63, 260
ZrmI	AGTACT	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.