Rw0G004460

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00168
Physical Location & Seq
Forward (+)
156667 .. 159339
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004460.1

Sequence Viewer

Length: 1476 bp
ATGAGTCCACTTATAGGTTCAGTTCTTCAATGCCTTGTCCTAATTATCTCTCGATTCGCCCAAACCTCTGGTTCTCTACACATTCCAAGGTTGAGTCCAATTAGACCAGGGATGTTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGTGGTTCCAATATTAGTGCACCAATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAAGCTCTCCTCATATATATAGAGCACCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGGACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCATCGGCTCCGATTATTTACTTTGATGACATTATTCCGCCAGAAAATGGATACTTCTCCATTGTCACGAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATAAAACAGTCTTGGTCTGAAATTGATGCACTTGCTTCTATGCCTGATGGTCTCTCAAATCTTAGACTACTTAAGCGCTTGATCACACTCTTCTCTGATCTCTTGTCACCACTACCCTTTCTTAATATGATCTGCAATGGTATTGATGGAGCTTCTTCAACTAATGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACTCATGCTACCTTAATGATGCACCCAGTAGTACTAATGCATTACCAAGCAGTACTAACGATGATGAAACATCTGTGGGATGGAGTTGGCAGGCATGTAGTGAAATGGTGATCCCGGTTTTTGCTATCGGCAACAACACCATGTTCCAACCTTCTTCTTTTGACCCGCAAAGCTACAATAACAACTGCAAGGCACAGTATGGCGTCCCTTCTCGCCCTAATTGGGTCACTACATATTACGGAGGCCATGATATAAAACTGACTCTCTCTAGATTCGCTAGTAACATCATTTTCTCTAATGGGCTCAGAGATCCTTACAGCAGTGGCGGGGTATTGCAAAATATATCAGACAGTCTTGTCGCAGTCTATACAAACAATGGGTCTCATTGCCTAGATATAGTTCCATCAACTAGTACCGATCCAGACTGGTTGGTCAGTCAGCGGAAAATGGAGGTCGAGATTATCAAAAAATGGATGACCGCGTACTATGCTGACCTTCAGACATTCAAATCTTAA

Protein Analysis

491

Amino Acids

54.27

Weight (kDa)

5.37

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 62 - 271 2e-49 Serine carboxypeptidase S28
Peptidase_S28 PF05577 292 - 470 3.1e-18 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1316, 1391
AccB7I CCANNNNNTGG 2 cut(s) 261, 686
AccII CGCG 1 cut(s) 1442
AciI CCGC 5 cut(s) 677, 1127, 1287, 1402, 1440
AclWI GGATC 4 cut(s) 502, 1066, 1265, 1373
AcuI CTGAAG 2 cut(s) 190, 1442
AcyI GRCGYC 1 cut(s) 1164
AfaI GTAC 6 cut(s) 260, 404, 994, 1015, 1375, 1445
AfeI AGCGCT 1 cut(s) 824
AfiI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1183
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 8 cut(s) 29, 202, 233, 374, 449, 475, 906, 1468
AhlI ACTAGT 1 cut(s) 1370
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 9 cut(s) 137, 219, 377, 488, 632, 638, 725, 899, 1134
AluI AGCT 9 cut(s) 137, 219, 377, 488, 632, 638, 725, 899, 1134
Alw21I GWGCWC 3 cut(s) 286, 399, 634
Alw26I GTCTC 3 cut(s) 725, 803, 1347
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 4 cut(s) 502, 1066, 1265, 1373
Aor51HI AGCGCT 1 cut(s) 824
AoxI GGCC 2 cut(s) 937, 1204
ApaLI GTGCAC 1 cut(s) 282
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 1325, 1357
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 308, 825
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 2 cut(s) 846, 1081
BaeGI GKGCMC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 634, 1266
Bbv12I GWGCWC 3 cut(s) 286, 399, 634
BccI CCATC 4 cut(s) 788, 887, 1035, 1372
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 3 cut(s) 193, 246, 828
BcnI CCSGG 1 cut(s) 1076
BcoDI GTCTC 3 cut(s) 725, 803, 1347
BcuI ACTAGT 1 cut(s) 1370
BfaI CTAG 8 cut(s) 432, 491, 635, 726, 1230, 1239, 1352, 1371
BfoI RGCGCY 1 cut(s) 826
BfrI CTTAAG 1 cut(s) 818
BfuI GTATCC 1 cut(s) 683
BmcAI AGTACT 3 cut(s) 260, 994, 1015
Bme1390I CCNGG 2 cut(s) 108, 1076
BmiI GGNNCC 2 cut(s) 271, 648
BmrFI CCNGG 2 cut(s) 108, 1076
BmrI ACTGGG 2 cut(s) 271, 981
BmsI GCATC 4 cut(s) 142, 578, 763, 970
BmuI ACTGGG 2 cut(s) 271, 981
BpuMI CCSGG 1 cut(s) 1076
BsaHI GRCGYC 1 cut(s) 1164
BsaI GGTCTC 2 cut(s) 803, 1347
BsaJI CCNNGG 3 cut(s) 86, 107, 301
BsaWI WCCGGW 2 cut(s) 399, 550
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1183
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 4 cut(s) 266, 346, 987, 1391
Bse3DI GCAATG 2 cut(s) 889, 1345
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 86, 107, 301
BseGI GGATG 3 cut(s) 117, 1046, 1440
BseLI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1183
BseMI GCAATG 2 cut(s) 889, 1345
BseMII CTCAG 3 cut(s) 492, 495, 1279
BseNI ACTGG 4 cut(s) 266, 346, 987, 1391
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 1442
BshFI GGCC 2 cut(s) 939, 1206
BshTI ACCGGT 1 cut(s) 399
BsiHKAI GWGCWC 3 cut(s) 286, 399, 634
BsiSI CCGG 3 cut(s) 400, 551, 1076
BslFI GGGAC 1 cut(s) 1151
BslI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1183
BsmAI GTCTC 3 cut(s) 725, 803, 1347
BsmFI GGGAC 1 cut(s) 1151
BsmI GAATGC 2 cut(s) 541, 588
BsnI GGCC 2 cut(s) 939, 1206
Bso31I GGTCTC 2 cut(s) 803, 1347
Bsp1286I GDGCHC 4 cut(s) 286, 399, 634, 1266
BspACI CCGC 5 cut(s) 677, 1127, 1287, 1402, 1440
BspANI GGCC 2 cut(s) 939, 1206
BspCNI CTCAG 3 cut(s) 491, 496, 1278
BspFNI CGCG 1 cut(s) 1442
BspLI GGNNCC 2 cut(s) 271, 648
BspPI GGATC 4 cut(s) 502, 1066, 1265, 1373
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 2 cut(s) 803, 1347
BsrDI GCAATG 2 cut(s) 889, 1345
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 4 cut(s) 266, 346, 987, 1391
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 86, 107, 301
BssNI GRCGYC 1 cut(s) 1164
BssT1I CCWWGG 2 cut(s) 86, 301
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 756, 1158, 1313
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 1164
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 2 cut(s) 152, 500
BstC8I GCNNGC 4 cut(s) 457, 588, 937, 1053
BstDEI CTNAG 4 cut(s) 478, 504, 809, 1265
BstF5I GGATG 3 cut(s) 117, 1046, 1440
BstFNI CGCG 1 cut(s) 1442
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 2 cut(s) 308, 825
BstMAI GTCTC 3 cut(s) 725, 803, 1347
BstMWI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1448
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 521, 1059
BstSCI CCNGG 2 cut(s) 106, 1074
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 1442
BstX2I RGATCY 2 cut(s) 507, 1270
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 2 cut(s) 507, 1270
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 939, 1206
BtsCI GGATG 3 cut(s) 117, 1046, 1440
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 1 cut(s) 1288
Cac8I GCNNGC 4 cut(s) 457, 588, 937, 1053
CfoI GCGC 2 cut(s) 308, 825
Cfr10I RCCGGY 1 cut(s) 399
CseI GACGC 2 cut(s) 535, 1153
Csp6I GTAC 6 cut(s) 259, 403, 993, 1014, 1374, 1444
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 6 cut(s) 518, 594, 966, 1056, 1102, 1208
CviQI GTAC 6 cut(s) 259, 403, 993, 1014, 1374, 1444
DdeI CTNAG 4 cut(s) 478, 504, 809, 1265
DrdI GACNNNNNNGTC 2 cut(s) 1316, 1391
DseDI GACNNNNNNGTC 2 cut(s) 1316, 1391
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
EciI GGCGGA 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 632
Eco130I CCWWGG 2 cut(s) 86, 301
Eco24I GRGCYC 2 cut(s) 634, 1266
Eco31I GGTCTC 2 cut(s) 803, 1347
Eco47III AGCGCT 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 190, 1442
EcoICRI GAGCTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 86, 301
EcoT22I ATGCAT 1 cut(s) 1003
EcoT38I GRGCYC 2 cut(s) 634, 1266
ErhI CCWWGG 2 cut(s) 86, 301
FaeI CATG 6 cut(s) 521, 597, 969, 1059, 1105, 1211
FaqI GGGAC 1 cut(s) 1151
FatI CATG 6 cut(s) 517, 593, 965, 1055, 1101, 1207
FauI CCCGC 2 cut(s) 1134, 1280
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 3 cut(s) 193, 246, 828
FokI GGATG 3 cut(s) 124, 1053, 1447
FriOI GRGCYC 2 cut(s) 634, 1266
FspBI CTAG 8 cut(s) 432, 491, 635, 726, 1230, 1239, 1352, 1371
GlaI GCGC 2 cut(s) 307, 824
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 2 cut(s) 939, 1206
HapII CCGG 3 cut(s) 400, 551, 1076
HgaI GACGC 2 cut(s) 535, 1153
HhaI GCGC 2 cut(s) 308, 825
Hin1I GRCGYC 1 cut(s) 1164
Hin1II CATG 6 cut(s) 521, 597, 969, 1059, 1105, 1211
Hin6I GCGC 2 cut(s) 306, 823
HinP1I GCGC 2 cut(s) 306, 823
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 6 cut(s) 4, 54, 94, 413, 1222, 1233
HpaII CCGG 3 cut(s) 400, 551, 1076
HphI GGTGA 2 cut(s) 846, 1081
Hpy166II GTNNAC 2 cut(s) 8, 284
Hpy188I TCNGA 7 cut(s) 209, 651, 766, 844, 1268, 1309, 1461
Hpy188III TCNNGA 7 cut(s) 51, 432, 706, 719, 1230, 1382, 1417
Hpy8I GTNNAC 2 cut(s) 8, 284
HpyAV CCTTC 4 cut(s) 703, 1122, 1179, 1466
HpyCH4III ACNGT 3 cut(s) 756, 1158, 1313
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1448
HpyF3I CTNAG 4 cut(s) 478, 504, 809, 1265
Hsp92I GRCGYC 1 cut(s) 1164
Hsp92II CATG 6 cut(s) 521, 597, 969, 1059, 1105, 1211
HspAI GCGC 2 cut(s) 306, 823
Ksp22I TGATCA 3 cut(s) 193, 246, 828
LmnI GCTCC 3 cut(s) 629, 652, 896
LweI GCATC 4 cut(s) 142, 578, 763, 970
MaeI CTAG 8 cut(s) 432, 491, 635, 726, 1230, 1239, 1352, 1371
MaeIII GTNAC 4 cut(s) 703, 852, 1186, 1241
MboII GAAGA 4 cut(s) 17, 829, 894, 1107
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 2 cut(s) 507, 1270
MhlI GDGCHC 4 cut(s) 286, 399, 634, 1266
MluCI AATT 6 cut(s) 42, 99, 250, 768, 948, 1180
MlyI GAGTC 3 cut(s) 13, 103, 1216
MmeI TCCRAC 1 cut(s) 1132
MnlI CCTC 5 cut(s) 76, 392, 521, 1196, 1405
Mph1103I ATGCAT 1 cut(s) 1003
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 4 cut(s) 819, 870, 975, 1474
MspA1I CMGCKG 1 cut(s) 1402
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 3 cut(s) 400, 551, 1076
MspR9I CCNGG 2 cut(s) 108, 1076
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 2 cut(s) 541, 588
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 1442
MwoI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1448
NciI CCSGG 1 cut(s) 1076
NdeI CATATG 1 cut(s) 574
NlaIII CATG 6 cut(s) 521, 597, 969, 1059, 1105, 1211
NlaIV GGNNCC 2 cut(s) 271, 648
NmuCI GTSAC 3 cut(s) 703, 852, 1186
NsiI ATGCAT 1 cut(s) 1003
NspI RCATGY 2 cut(s) 521, 1059
PciI ACATGT 1 cut(s) 517
PctI GAATGC 2 cut(s) 541, 588
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 3 cut(s) 54, 413, 1233
PflMI CCANNNNNTGG 2 cut(s) 261, 686
PinAI ACCGGT 1 cut(s) 399
PleI GAGTC 3 cut(s) 12, 102, 1216
PpsI GAGTC 3 cut(s) 12, 102, 1216
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 271, 648
PsuI RGATCY 2 cut(s) 507, 1270
RsaI GTAC 6 cut(s) 260, 404, 994, 1015, 1375, 1445
RsaNI GTAC 6 cut(s) 259, 403, 993, 1014, 1374, 1444
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 4 cut(s) 819, 870, 975, 1474
ScaI AGTACT 3 cut(s) 260, 994, 1015
SchI GAGTC 3 cut(s) 13, 103, 1216
ScrFI CCNGG 2 cut(s) 108, 1076
SduI GDGCHC 4 cut(s) 286, 399, 634, 1266
SfaNI GCATC 4 cut(s) 142, 578, 763, 970
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SpeI ACTAGT 1 cut(s) 1370
Sse9I AATT 6 cut(s) 42, 99, 250, 768, 948, 1180
SsiI CCGC 5 cut(s) 677, 1127, 1287, 1402, 1440
SspI AATATT 3 cut(s) 277, 291, 930
SspMI CTAG 8 cut(s) 432, 491, 635, 726, 1230, 1239, 1352, 1371
SstI GAGCTC 1 cut(s) 634
StyD4I CCNGG 2 cut(s) 106, 1074
StyI CCWWGG 2 cut(s) 86, 301
TaaI ACNGT 3 cut(s) 756, 1158, 1313
TaqI TCGA 5 cut(s) 52, 118, 131, 718, 1416
TasI AATT 6 cut(s) 42, 99, 250, 768, 948, 1180
TatI WGTACW 3 cut(s) 258, 992, 1013
TfiI GAWTC 3 cut(s) 54, 413, 1233
Tru1I TTAA 4 cut(s) 819, 870, 975, 1474
Tru9I TTAA 4 cut(s) 819, 870, 975, 1474
TscAI CASTG 1 cut(s) 1288
TseFI GTSAC 3 cut(s) 703, 852, 1186
Tsp45I GTSAC 3 cut(s) 703, 852, 1186
TspDTI ATGAA 3 cut(s) 582, 630, 1041
TspGWI ACGGA 2 cut(s) 423, 1215
TspRI CASTG 1 cut(s) 1288
Van91I CCANNNNNTGG 2 cut(s) 261, 686
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 282
XbaI TCTAGA 2 cut(s) 431, 1229
XceI RCATGY 2 cut(s) 521, 1059
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 8 cut(s) 432, 491, 635, 726, 1230, 1239, 1352, 1371
ZrmI AGTACT 3 cut(s) 260, 994, 1015
Zsp2I ATGCAT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.