Rw5G034620

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
59658497 .. 59661064
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G034620.1

Sequence Viewer

Length: 1500 bp
ATGAATCCACTTTTAGGTTCAGTTCTTCAATGCCTTGTCCTAATTATCTCTCGATTCGCCCTAACCTCTGGTTCTCTACACATTCCAAGGTTGAGTCCAATTAGACCAGGGATGTTTCGATCACACCAATCGAAAGCTTTGTCTGCATTTGATGCAACTGAATACGAAACATTCTATTACAACCAAACACTTGATCATTTCAACTTCAGACCTGATAGCTTCTCTACTTTTCAACAAAAATATGTGATCAATTCCAAGTACTGGGGTGGTTCCAATATTAGTGCACCAATATTTGCTTACCTTGGCGCAGAAACATCATTGGATAGTGTTATATCTTATACTGGCTTTCTCCCTGAAAACGCCAATCAGTTTCAAGCTCTCCTCATATATATAGAGCACCGGTACTACGGAGAATCAATCCCATTCGGCTCTAGAACAGAAGCATTTCAAAATGCAAGCACTCTTGGCTACTTCAACTCAGCCCAAGCTCTAGCAGATTATGCTGAGATCCTCATACATGTAAAGACGCAACTGAATGCTGGACATTCTCCGGTCATTGTTATTGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATACCCCCATATCGCTCTTGGAGCTCTAGCTTCATCGGCTCCGATTCTTTACTTTGATGACATTATTCCGCCAGAAAATGGATACTTCTCCATTGTCACGAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAACCATAAAACAGTCTTGGTCTGAAATTGATGCACTTGCTTCTATGCCTGATGGTCTCTCAAATCTTAGCAAAATGTTCCACACTTGCAGTCCCTTGAGCGCAGCATCCTATCTCAAGTACTCCTTGCAGTCAATGTACATGAAGGCAGCTCAGTTCGATGATCCATCAACAAATCCAGTTAATATGATCTGCAATGGTATTGATGGAGCTTCTTCAACTAATGATACTCTTGCGAAAATATTTGCTGGCCTTGTTGCAATTGCAGGAAACAACTCATGCTACCTTAATGATGCACCCAGTAGTACTAATGCATTACCAAGCAGTACTAACGATGATGAAACATCTGTGGGATGGAGTTGGCAGGCATGTAGTGAAATGGTGATCCCGGTTTTTGCTATCGGCAACAACACCATGTTCCAACCTTCTTCTTTTGACCCGCAAAGCTACAATAACAACTGCAAGGCACAGTATGGCGTCCCTTCTCGCCCTAATTGGGTCACTACATATTACGGAGGCCATGATATAAAACTGACTCTCTCTAGATTCGCTAGTAACATCATTTTCTCTGAGGTATTGCAAAATATATCAGACAGTCTTGTCGCAGTCTATACAAACAATGGGTCTCATTGCCTAGATATAGTTCCATCAACTAGTACCGATCCAGACTGGTTGGTCAATCAGCGGAAAATGGAGGTCGAGATTATCAAAAAATGGATGACCGCGTACTATGCTGACCTTCAGACATTCAAATCTTAA

Protein Analysis

499

Amino Acids

55.22

Weight (kDa)

5.27

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 62 - 478 4.6e-68 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1340, 1415
AccB7I CCANNNNNTGG 2 cut(s) 261, 686
AccII CGCG 1 cut(s) 1466
AciI CCGC 4 cut(s) 677, 1181, 1426, 1464
AclWI GGATC 4 cut(s) 502, 899, 1120, 1397
AcuI CTGAAG 2 cut(s) 190, 1466
AcyI GRCGYC 1 cut(s) 1218
AfaI GTAC 8 cut(s) 260, 404, 863, 881, 1048, 1069, 1399, 1469
AfiI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1237
AflIII ACRYGT 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 8 cut(s) 29, 202, 233, 374, 449, 475, 960, 1492
AhlI ACTAGT 1 cut(s) 1394
AjnI CCWGG 1 cut(s) 106
Alw21I GWGCWC 3 cut(s) 286, 399, 634
Alw26I GTCTC 3 cut(s) 725, 803, 1371
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 4 cut(s) 502, 899, 1120, 1397
AoxI GGCC 2 cut(s) 991, 1258
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 845, 890
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 1349, 1381
AsiGI ACCGGT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 308, 845
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 1 cut(s) 1135
BaeGI GKGCMC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 634
Bbv12I GWGCWC 3 cut(s) 286, 399, 634
BbvI GCAGC 2 cut(s) 857, 902
BccI CCATC 5 cut(s) 788, 916, 941, 1089, 1396
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 2 cut(s) 193, 246
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 3 cut(s) 725, 803, 1371
BcuI ACTAGT 1 cut(s) 1394
BfaI CTAG 8 cut(s) 432, 491, 635, 726, 1284, 1293, 1376, 1395
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 2 cut(s) 846, 891
BlsI GCNGC 2 cut(s) 847, 892
BmcAI AGTACT 4 cut(s) 260, 863, 1048, 1069
Bme1390I CCNGG 2 cut(s) 108, 1130
BmiI GGNNCC 2 cut(s) 271, 648
BmrFI CCNGG 2 cut(s) 108, 1130
BmrI ACTGGG 2 cut(s) 271, 1035
BmsI GCATC 5 cut(s) 142, 578, 763, 857, 1024
BmuI ACTGGG 2 cut(s) 271, 1035
BpuEI CTTGAG 2 cut(s) 842, 859
BpuMI CCSGG 1 cut(s) 1130
BsaHI GRCGYC 1 cut(s) 1218
BsaI GGTCTC 2 cut(s) 803, 1371
BsaJI CCNNGG 3 cut(s) 86, 107, 301
BsaWI WCCGGW 2 cut(s) 399, 550
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1237
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 5 cut(s) 266, 346, 920, 1041, 1415
Bse3DI GCAATG 2 cut(s) 943, 1369
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 86, 107, 301
BseGI GGATG 4 cut(s) 117, 848, 1100, 1464
BseLI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1237
BseMI GCAATG 2 cut(s) 943, 1369
BseMII CTCAG 4 cut(s) 492, 495, 908, 1302
BseNI ACTGG 5 cut(s) 266, 346, 920, 1041, 1415
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 857, 902
Bsh1236I CGCG 1 cut(s) 1466
BshFI GGCC 2 cut(s) 993, 1260
BshTI ACCGGT 1 cut(s) 399
BsiHKAI GWGCWC 3 cut(s) 286, 399, 634
BsiSI CCGG 3 cut(s) 400, 551, 1130
BslFI GGGAC 2 cut(s) 819, 1205
BslI CCNNNNNNNGG 4 cut(s) 14, 261, 686, 1237
BsmAI GTCTC 3 cut(s) 725, 803, 1371
BsmFI GGGAC 2 cut(s) 819, 1205
BsmI GAATGC 2 cut(s) 541, 588
BsnI GGCC 2 cut(s) 993, 1260
Bso31I GGTCTC 2 cut(s) 803, 1371
Bsp1286I GDGCHC 3 cut(s) 286, 399, 634
Bsp1407I TGTACA 1 cut(s) 879
Bsp143I GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
BspACI CCGC 4 cut(s) 677, 1181, 1426, 1464
BspANI GGCC 2 cut(s) 993, 1260
BspCNI CTCAG 4 cut(s) 491, 496, 907, 1303
BspFNI CGCG 1 cut(s) 1466
BspLI GGNNCC 2 cut(s) 271, 648
BspPI GGATC 4 cut(s) 502, 899, 1120, 1397
BspTNI GGTCTC 2 cut(s) 803, 1371
BsrDI GCAATG 2 cut(s) 943, 1369
BsrFI RCCGGY 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 879
BsrI ACTGG 5 cut(s) 266, 346, 920, 1041, 1415
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 86, 107, 301
BssMI GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
BssNI GRCGYC 1 cut(s) 1218
BssT1I CCWWGG 2 cut(s) 86, 301
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 756, 1212, 1337
BstACI GRCGYC 1 cut(s) 1218
BstAPI GCANNNNNTGC 2 cut(s) 152, 500
BstAUI TGTACA 1 cut(s) 879
BstC8I GCNNGC 4 cut(s) 457, 588, 991, 1107
BstDEI CTNAG 5 cut(s) 478, 504, 809, 894, 1311
BstF5I GGATG 4 cut(s) 117, 848, 1100, 1464
BstFNI CGCG 1 cut(s) 1466
BstHHI GCGC 2 cut(s) 308, 845
BstKTI GATC 8 cut(s) 122, 196, 249, 510, 907, 933, 1128, 1405
BstMAI GTCTC 3 cut(s) 725, 803, 1371
BstMBI GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
BstMWI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1472
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 521, 1113
BstSCI CCNGG 2 cut(s) 106, 1128
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 1466
BstV1I GCAGC 2 cut(s) 857, 902
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 2 cut(s) 993, 1260
BtsCI GGATG 4 cut(s) 117, 848, 1100, 1464
Cac8I GCNNGC 4 cut(s) 457, 588, 991, 1107
CfoI GCGC 2 cut(s) 308, 845
Cfr10I RCCGGY 1 cut(s) 399
CseI GACGC 2 cut(s) 535, 1207
Csp6I GTAC 8 cut(s) 259, 403, 862, 880, 1047, 1068, 1398, 1468
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 7 cut(s) 518, 594, 883, 1020, 1110, 1156, 1262
CviQI GTAC 8 cut(s) 259, 403, 862, 880, 1047, 1068, 1398, 1468
DdeI CTNAG 5 cut(s) 478, 504, 809, 894, 1311
DpnI GATC 8 cut(s) 121, 195, 248, 509, 906, 932, 1127, 1404
DpnII GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
DrdI GACNNNNNNGTC 2 cut(s) 1340, 1415
DseDI GACNNNNNNGTC 2 cut(s) 1340, 1415
EciI GGCGGA 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 632
Eco130I CCWWGG 2 cut(s) 86, 301
Eco24I GRGCYC 1 cut(s) 634
Eco31I GGTCTC 2 cut(s) 803, 1371
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 190, 1466
EcoICRI GAGCTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 86, 301
EcoT22I ATGCAT 1 cut(s) 1057
EcoT38I GRGCYC 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 86, 301
FaeI CATG 7 cut(s) 521, 597, 886, 1023, 1113, 1159, 1265
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 819, 1205
FatI CATG 7 cut(s) 517, 593, 882, 1019, 1109, 1155, 1261
FauI CCCGC 1 cut(s) 1188
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 193, 246
Fnu4HI GCNGC 2 cut(s) 846, 891
FokI GGATG 4 cut(s) 124, 835, 1107, 1471
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 2 cut(s) 846, 891
FspBI CTAG 8 cut(s) 432, 491, 635, 726, 1284, 1293, 1376, 1395
GlaI GCGC 2 cut(s) 307, 844
GluI GCNGC 2 cut(s) 846, 891
HaeIII GGCC 2 cut(s) 993, 1260
HapII CCGG 3 cut(s) 400, 551, 1130
HgaI GACGC 2 cut(s) 535, 1207
HhaI GCGC 2 cut(s) 308, 845
Hin1I GRCGYC 1 cut(s) 1218
Hin1II CATG 7 cut(s) 521, 597, 886, 1023, 1113, 1159, 1265
Hin6I GCGC 2 cut(s) 306, 843
HinP1I GCGC 2 cut(s) 306, 843
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 7 cut(s) 4, 54, 94, 413, 652, 1276, 1287
HpaII CCGG 3 cut(s) 400, 551, 1130
HphI GGTGA 1 cut(s) 1135
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 6 cut(s) 209, 651, 766, 1312, 1333, 1485
Hpy188III TCNNGA 7 cut(s) 51, 432, 706, 719, 1284, 1406, 1441
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 5 cut(s) 703, 880, 1176, 1233, 1490
HpyCH4III ACNGT 3 cut(s) 756, 1212, 1337
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1472
HpyF3I CTNAG 5 cut(s) 478, 504, 809, 894, 1311
Hsp92I GRCGYC 1 cut(s) 1218
Hsp92II CATG 7 cut(s) 521, 597, 886, 1023, 1113, 1159, 1265
HspAI GCGC 2 cut(s) 306, 843
Ksp22I TGATCA 2 cut(s) 193, 246
Kzo9I GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
LmnI GCTCC 3 cut(s) 629, 652, 950
Lsp1109I GCAGC 2 cut(s) 857, 902
LweI GCATC 5 cut(s) 142, 578, 763, 857, 1024
MaeI CTAG 8 cut(s) 432, 491, 635, 726, 1284, 1293, 1376, 1395
MaeIII GTNAC 3 cut(s) 703, 1240, 1295
MalI GATC 8 cut(s) 121, 195, 248, 509, 906, 932, 1127, 1404
MboI GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
MboII GAAGA 3 cut(s) 17, 948, 1161
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 3 cut(s) 286, 399, 634
MluCI AATT 6 cut(s) 42, 99, 250, 768, 1002, 1234
MlyI GAGTC 2 cut(s) 103, 1270
MmeI TCCRAC 1 cut(s) 1186
MnlI CCTC 6 cut(s) 76, 392, 521, 1250, 1306, 1429
Mph1103I ATGCAT 1 cut(s) 1057
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 924, 1029, 1498
MspA1I CMGCKG 1 cut(s) 1426
MspI CCGG 3 cut(s) 400, 551, 1130
MspR9I CCNGG 2 cut(s) 108, 1130
MunI CAATTG 1 cut(s) 1002
Mva1269I GAATGC 2 cut(s) 541, 588
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 1466
MwoI GCNNNNNNNGC 7 cut(s) 143, 152, 465, 500, 629, 644, 1472
NciI CCSGG 1 cut(s) 1130
NdeI CATATG 1 cut(s) 574
NdeII GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
NlaIII CATG 7 cut(s) 521, 597, 886, 1023, 1113, 1159, 1265
NlaIV GGNNCC 2 cut(s) 271, 648
NmuCI GTSAC 2 cut(s) 703, 1240
NsiI ATGCAT 1 cut(s) 1057
NspI RCATGY 2 cut(s) 521, 1113
PciI ACATGT 1 cut(s) 517
PctI GAATGC 2 cut(s) 541, 588
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 5 cut(s) 4, 54, 413, 652, 1287
PflMI CCANNNNNTGG 2 cut(s) 261, 686
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 2 cut(s) 847, 892
PleI GAGTC 2 cut(s) 102, 1270
PpsI GAGTC 2 cut(s) 102, 1270
PscI ACATGT 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 271, 648
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 8 cut(s) 260, 404, 863, 881, 1048, 1069, 1399, 1469
RsaNI GTAC 8 cut(s) 259, 403, 862, 880, 1047, 1068, 1398, 1468
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 3 cut(s) 924, 1029, 1498
SatI GCNGC 2 cut(s) 846, 891
Sau3AI GATC 8 cut(s) 119, 193, 246, 507, 904, 930, 1125, 1402
ScaI AGTACT 4 cut(s) 260, 863, 1048, 1069
SchI GAGTC 2 cut(s) 103, 1270
ScrFI CCNGG 2 cut(s) 108, 1130
SduI GDGCHC 3 cut(s) 286, 399, 634
SfaNI GCATC 5 cut(s) 142, 578, 763, 857, 1024
SmlI CTYRAG 2 cut(s) 838, 857
SmoI CTYRAG 2 cut(s) 838, 857
SpeI ACTAGT 1 cut(s) 1394
Sse9I AATT 6 cut(s) 42, 99, 250, 768, 1002, 1234
SsiI CCGC 4 cut(s) 677, 1181, 1426, 1464
SspI AATATT 3 cut(s) 277, 291, 984
SspMI CTAG 8 cut(s) 432, 491, 635, 726, 1284, 1293, 1376, 1395
SstI GAGCTC 1 cut(s) 634
StyD4I CCNGG 2 cut(s) 106, 1128
StyI CCWWGG 2 cut(s) 86, 301
TaaI ACNGT 3 cut(s) 756, 1212, 1337
TaqI TCGA 6 cut(s) 52, 118, 131, 718, 900, 1440
TasI AATT 6 cut(s) 42, 99, 250, 768, 1002, 1234
TatI WGTACW 5 cut(s) 258, 861, 879, 1046, 1067
TfiI GAWTC 5 cut(s) 4, 54, 413, 652, 1287
Tru1I TTAA 3 cut(s) 924, 1029, 1498
Tru9I TTAA 3 cut(s) 924, 1029, 1498
TseFI GTSAC 2 cut(s) 703, 1240
TseI GCWGC 2 cut(s) 845, 890
Tsp45I GTSAC 2 cut(s) 703, 1240
TspDTI ATGAA 5 cut(s) 17, 582, 630, 899, 1095
TspGWI ACGGA 2 cut(s) 423, 1269
Van91I CCANNNNNTGG 2 cut(s) 261, 686
VneI GTGCAC 1 cut(s) 282
XbaI TCTAGA 2 cut(s) 431, 1283
XceI RCATGY 2 cut(s) 521, 1113
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 8 cut(s) 432, 491, 635, 726, 1284, 1293, 1376, 1395
ZrmI AGTACT 4 cut(s) 260, 863, 1048, 1069
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.