Rw0G015550

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00715
Physical Location & Seq
Forward (+)
21316 .. 24345
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015550.1

Sequence Viewer

Length: 1476 bp
ATGAAGCAACTCACATTCTCACTCCAATCATCCCTTCTATTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAGGCCGACCCAGCGAAGCTTCATCATCTGCATTTGATCCCAAAGATCTTCAGACATTTTACTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCTATACTCGCTTACTTAGGCGCAGAACAATCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCAACGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAGCTACATGCTGAACATTCTCCGGTCATTGTTATCGGCGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGTCTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTTGACGACATAGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATATTATTGCTTCTAAGCCTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCACGTCGTCTGAGCTCAAGGACTACTTGGAATCGATGTATGCTTTGGCAGCTCAATACGATGATCCACCGAATTATCCGGTTACTGTAGTCTATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCTGTCATGCTACGTCAACGAGCCCAGAAATGTAACAGAGGGGTGGGCCTGGCAGACATGTAGTGACATGGTGATTCCCATAAACGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATCTCGATGAATTTATCAATAACTGCAAGGCAACCTATGGCGTCCCTCCCAGGCCTACTTGGGTGACTACCTACTTTGGAGGCCATGACATAAAACTGAGTCTGTCCAGGTTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTAGCTGTCCATACAAAGAATGGGTCTCACTGCTTGGATATTGTCACCTCAACCCATGCTGATCCAGAATGGTTGGTCAATCAGCGGAAAAGTGAGGTCAGAATCATCAAAGGATGGATGGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

491

Amino Acids

55.14

Weight (kDa)

5.81

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 69 - 309 2.1e-50 Serine carboxypeptidase S28
Peptidase_S28 PF05577 346 - 470 1.4e-16 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 971
AasI GACNNNNNNGTC 1 cut(s) 868
Acc36I ACCTGC 1 cut(s) 971
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 3 cut(s) 588, 1290, 1405
AclWI GGATC 4 cut(s) 167, 457, 920, 1376
AcsI RAATTY 5 cut(s) 81, 528, 839, 1121, 1136
AcuI CTGAAG 2 cut(s) 170, 834
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 2 cut(s) 425, 1118
AfiI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
AflIII ACRYGT 2 cut(s) 538, 1061
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 6 cut(s) 223, 244, 254, 395, 496, 1463
AjiI CACGTC 2 cut(s) 640, 867
AjnI CCWGG 3 cut(s) 1052, 1175, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
Alw21I GWGCWC 4 cut(s) 307, 420, 655, 879
Alw26I GTCTC 3 cut(s) 746, 1266, 1350
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 4 cut(s) 167, 457, 920, 1376
AoxI GGCC 6 cut(s) 139, 657, 817, 1050, 1178, 1207
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 550, 911
ApoI RAATTY 5 cut(s) 81, 528, 839, 1121, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 1328, 1360
AseI ATTAAT 1 cut(s) 41
AsiGI ACCGGT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 1050
AsuHPI GGTGA 4 cut(s) 718, 1087, 1201, 1357
AsuNHI GCTAGC 1 cut(s) 1241
BaeGI GKGCMC 1 cut(s) 307
BanII GRGCYC 3 cut(s) 655, 879, 1029
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbsI GAAGAC 1 cut(s) 1308
Bbv12I GWGCWC 4 cut(s) 307, 420, 655, 879
BbvI GCAGC 2 cut(s) 562, 923
BccI CCATC 2 cut(s) 1428, 1432
BciT130I CCWGG 3 cut(s) 1054, 1177, 1234
BciVI GTATCC 3 cut(s) 482, 642, 704
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 3 cut(s) 746, 1266, 1350
BfaI CTAG 2 cut(s) 747, 1242
BfmI CTRYAG 2 cut(s) 510, 948
BfuAI ACCTGC 1 cut(s) 971
BfuI GTATCC 3 cut(s) 482, 642, 704
BglII AGATCT 1 cut(s) 181
BisI GCNGC 4 cut(s) 551, 589, 912, 1291
BlsI GCNGC 4 cut(s) 552, 590, 913, 1292
Bme1390I CCNGG 3 cut(s) 1054, 1177, 1234
BmgBI CACGTC 2 cut(s) 640, 867
BmgT120I GGNCC 1 cut(s) 1050
BmiI GGNNCC 2 cut(s) 292, 368
BmrFI CCNGG 3 cut(s) 1054, 1177, 1234
BmtI GCTAGC 1 cut(s) 1245
BpiI GAAGAC 1 cut(s) 1308
BpmI CTGGAG 3 cut(s) 123, 386, 684
BpuEI CTTGAG 2 cut(s) 808, 863
Bsa29I ATCGAT 1 cut(s) 896
BsaHI GRCGYC 1 cut(s) 1167
BsaI GGTCTC 2 cut(s) 1266, 1350
BsaJI CCNNGG 3 cut(s) 86, 729, 1175
BsaWI WCCGGW 4 cut(s) 420, 571, 940, 998
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 3 cut(s) 1054, 1177, 1234
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 86, 729, 1175
BseGI GGATG 3 cut(s) 29, 1439, 1443
BseLI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
BseMII CTCAG 5 cut(s) 81, 83, 513, 864, 1214
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 2 cut(s) 562, 923
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 6 cut(s) 141, 659, 819, 1052, 1180, 1209
BshTI ACCGGT 1 cut(s) 420
BshVI ATCGAT 1 cut(s) 896
BsiHKAI GWGCWC 4 cut(s) 307, 420, 655, 879
BsiSI CCGG 4 cut(s) 421, 572, 941, 999
BslFI GGGAC 1 cut(s) 1154
BslI CCNNNNNNNGG 4 cut(s) 104, 282, 362, 707
BsmAI GTCTC 3 cut(s) 746, 1266, 1350
BsmFI GGGAC 1 cut(s) 1154
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 6 cut(s) 141, 659, 819, 1052, 1180, 1209
Bso31I GGTCTC 2 cut(s) 1266, 1350
Bsp1286I GDGCHC 5 cut(s) 307, 420, 655, 879, 1029
Bsp143I GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
BspACI CCGC 3 cut(s) 588, 1290, 1405
BspANI GGCC 6 cut(s) 141, 659, 819, 1052, 1180, 1209
BspCNI CTCAG 5 cut(s) 80, 84, 512, 865, 1215
BspDI ATCGAT 1 cut(s) 896
BspLI GGNNCC 2 cut(s) 292, 368
BspMI ACCTGC 1 cut(s) 971
BspOI GCTAGC 1 cut(s) 1245
BspPI GGATC 4 cut(s) 167, 457, 920, 1376
BspTNI GGTCTC 2 cut(s) 1266, 1350
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 3 cut(s) 86, 729, 1175
BssMI GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 2 cut(s) 86, 729
Bst2UI CCWGG 3 cut(s) 1054, 1177, 1234
Bst4CI ACNGT 5 cut(s) 858, 949, 1116, 1283, 1316
BstACI GRCGYC 1 cut(s) 1167
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 478, 609, 1243
BstDEI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1223, 1268
BstF5I GGATG 3 cut(s) 29, 1439, 1443
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 7 cut(s) 175, 184, 270, 452, 928, 1129, 1384
BstMAI GTCTC 3 cut(s) 746, 1266, 1350
BstMBI GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
BstMWI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
BstNI CCWGG 3 cut(s) 1054, 1177, 1234
BstNSI RCATGY 3 cut(s) 542, 560, 1065
BstSCI CCNGG 3 cut(s) 1052, 1175, 1232
BstSFI CTRYAG 2 cut(s) 510, 948
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 562, 923
BstV2I GAAGAC 1 cut(s) 1308
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 896
BsuI GTATCC 3 cut(s) 482, 642, 704
BsuRI GGCC 6 cut(s) 141, 659, 819, 1052, 1180, 1209
BsuTUI ATCGAT 1 cut(s) 896
BtrI CACGTC 2 cut(s) 640, 867
BtsCI GGATG 3 cut(s) 29, 1439, 1443
BtsI GCAGTG 1 cut(s) 1348
BtsIMutI CAGTG 3 cut(s) 307, 1321, 1348
BveI ACCTGC 1 cut(s) 971
Cac8I GCNNGC 3 cut(s) 478, 609, 1243
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 1050
ClaI ATCGAT 1 cut(s) 896
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 2 cut(s) 424, 1117
CspAI ACCGGT 1 cut(s) 420
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviQI GTAC 2 cut(s) 424, 1117
DdeI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1223, 1268
DpnI GATC 7 cut(s) 174, 183, 269, 451, 927, 1128, 1383
DpnII GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
DraI TTTAAA 1 cut(s) 469
DrdI GACNNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 868
Ecl136II GAGCTC 2 cut(s) 653, 877
Eco130I CCWWGG 2 cut(s) 86, 729
Eco147I AGGCCT 2 cut(s) 819, 1180
Eco24I GRGCYC 3 cut(s) 655, 879, 1029
Eco31I GGTCTC 2 cut(s) 1266, 1350
Eco53kI GAGCTC 2 cut(s) 653, 877
Eco57I CTGAAG 2 cut(s) 170, 834
EcoICRI GAGCTC 2 cut(s) 653, 877
EcoRII CCWGG 3 cut(s) 1052, 1175, 1232
EcoT14I CCWWGG 2 cut(s) 86, 729
EcoT38I GRGCYC 3 cut(s) 655, 879, 1029
ErhI CCWWGG 2 cut(s) 86, 729
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1261, 1293
FaqI GGGAC 1 cut(s) 1154
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 551, 589, 912, 1291
FokI GGATG 3 cut(s) 16, 1446, 1450
FriOI GRGCYC 3 cut(s) 655, 879, 1029
Fsp4HI GCNGC 4 cut(s) 551, 589, 912, 1291
FspBI CTAG 2 cut(s) 747, 1242
GlaI GCGC 1 cut(s) 328
GluI GCNGC 4 cut(s) 551, 589, 912, 1291
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 3 cut(s) 123, 386, 684
HaeIII GGCC 6 cut(s) 141, 659, 819, 1052, 1180, 1209
HapII CCGG 4 cut(s) 421, 572, 941, 999
HgaI GACGC 1 cut(s) 1156
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 1167
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 2 cut(s) 861, 1021
HindII GTYRAC 2 cut(s) 861, 1021
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 6 cut(s) 94, 434, 893, 1078, 1225, 1422
HpaII CCGG 4 cut(s) 421, 572, 941, 999
HphI GGTGA 4 cut(s) 718, 1087, 1201, 1357
Hpy166II GTNNAC 4 cut(s) 305, 861, 1021, 1093
Hpy188I TCNGA 7 cut(s) 189, 449, 787, 845, 874, 1312, 1421
Hpy188III TCNNGA 5 cut(s) 403, 701, 740, 1130, 1385
Hpy8I GTNNAC 4 cut(s) 305, 861, 1021, 1093
Hpy99I CGWCG 2 cut(s) 644, 871
HpyAV CCTTC 3 cut(s) 44, 809, 1469
HpyCH4III ACNGT 5 cut(s) 858, 949, 1116, 1283, 1316
HpyCH4IV ACGT 4 cut(s) 639, 866, 1017, 1089
HpyCH4V TGCA 8 cut(s) 167, 305, 476, 524, 852, 980, 992, 1152
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
HpyF3I CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1223, 1268
HpySE526I ACGT 4 cut(s) 639, 866, 1017, 1089
Hsp92I GRCGYC 1 cut(s) 1167
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
LmnI GCTCC 3 cut(s) 296, 650, 673
Lsp1109I GCAGC 2 cut(s) 562, 923
MaeI CTAG 2 cut(s) 747, 1242
MaeII ACGT 4 cut(s) 639, 866, 1017, 1089
MaeIII GTNAC 8 cut(s) 58, 122, 724, 943, 1036, 1067, 1189, 1363
MalI GATC 7 cut(s) 174, 183, 269, 451, 927, 1128, 1383
MboI GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
MboII GAAGA 2 cut(s) 176, 1313
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 5 cut(s) 307, 420, 655, 879, 1029
MlyI GAGTC 2 cut(s) 103, 1234
MmeI TCCRAC 1 cut(s) 122
MseI TTAA 3 cut(s) 41, 77, 468
MslI CAYNNNNRTG 2 cut(s) 285, 1088
MspA1I CMGCKG 1 cut(s) 1405
MspI CCGG 4 cut(s) 421, 572, 941, 999
MspR9I CCNGG 3 cut(s) 1054, 1177, 1234
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 3 cut(s) 1054, 1177, 1234
MwoI GCNNNNNNNGC 5 cut(s) 147, 521, 650, 665, 911
NdeI CATATG 1 cut(s) 595
NdeII GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
NheI GCTAGC 1 cut(s) 1241
NlaIV GGNNCC 2 cut(s) 292, 368
NmuCI GTSAC 5 cut(s) 58, 724, 1067, 1189, 1363
NspI RCATGY 3 cut(s) 542, 560, 1065
PaqCI CACCTGC 1 cut(s) 971
PceI AGGCCT 2 cut(s) 819, 1180
PciI ACATGT 2 cut(s) 538, 1061
PcsI WCGNNNNNNNCGW 1 cut(s) 1095
PctI GAATGC 1 cut(s) 609
PfeI GAWTC 4 cut(s) 434, 893, 1078, 1422
PflFI GACNNNGTC 1 cut(s) 865
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 4 cut(s) 552, 590, 913, 1292
PleI GAGTC 2 cut(s) 102, 1233
PpsI GAGTC 2 cut(s) 102, 1233
PscI ACATGT 2 cut(s) 538, 1061
PshBI ATTAAT 1 cut(s) 41
Psp124BI GAGCTC 2 cut(s) 655, 879
Psp6I CCWGG 3 cut(s) 1052, 1175, 1232
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 3 cut(s) 1052, 1175, 1232
PspN4I GGNNCC 2 cut(s) 292, 368
PspPI GGNCC 1 cut(s) 1050
PsuI RGATCY 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 865
RsaI GTAC 2 cut(s) 425, 1118
RsaNI GTAC 2 cut(s) 424, 1117
RseI CAYNNNNRTG 2 cut(s) 285, 1088
SacI GAGCTC 2 cut(s) 655, 879
SaqAI TTAA 3 cut(s) 41, 77, 468
SatI GCNGC 4 cut(s) 551, 589, 912, 1291
Sau3AI GATC 7 cut(s) 172, 181, 267, 449, 925, 1126, 1381
Sau96I GGNCC 1 cut(s) 1050
SchI GAGTC 2 cut(s) 103, 1234
ScrFI CCNGG 3 cut(s) 1054, 1177, 1234
SduI GDGCHC 5 cut(s) 307, 420, 655, 879, 1029
SfcI CTRYAG 2 cut(s) 510, 948
SmiMI CAYNNNNRTG 2 cut(s) 285, 1088
SmlI CTYRAG 2 cut(s) 823, 878
SmoI CTYRAG 2 cut(s) 823, 878
SseBI AGGCCT 2 cut(s) 819, 1180
SsiI CCGC 3 cut(s) 588, 1290, 1405
SspI AATATT 1 cut(s) 975
SspMI CTAG 2 cut(s) 747, 1242
SstI GAGCTC 2 cut(s) 655, 879
StuI AGGCCT 2 cut(s) 819, 1180
StyD4I CCNGG 3 cut(s) 1052, 1175, 1232
StyI CCWWGG 2 cut(s) 86, 729
TaaI ACNGT 5 cut(s) 858, 949, 1116, 1283, 1316
TaiI ACGT 4 cut(s) 642, 869, 1020, 1092
TaqI TCGA 3 cut(s) 739, 896, 1131
TauI GCSGC 2 cut(s) 591, 1293
TfiI GAWTC 4 cut(s) 434, 893, 1078, 1422
Tru1I TTAA 3 cut(s) 41, 77, 468
Tru9I TTAA 3 cut(s) 41, 77, 468
TscAI CASTG 3 cut(s) 307, 1321, 1355
TseFI GTSAC 5 cut(s) 58, 724, 1067, 1189, 1363
TseI GCWGC 2 cut(s) 550, 911
Tsp45I GTSAC 5 cut(s) 58, 724, 1067, 1189, 1363
TspDTI ATGAA 4 cut(s) 17, 147, 603, 1149
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 3 cut(s) 307, 1321, 1355
Tth111I GACNNNGTC 1 cut(s) 865
Van91I CCANNNNNTGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 303
VspI ATTAAT 1 cut(s) 41
XapI RAATTY 5 cut(s) 81, 528, 839, 1121, 1136
XceI RCATGY 3 cut(s) 542, 560, 1065
XcmI CCANNNNNNNNNTGG 2 cut(s) 644, 1337
XspI CTAG 2 cut(s) 747, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.