Rw0G004410

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00168
Physical Location & Seq
Forward (+)
81522 .. 84900
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004410.1

Sequence Viewer

Length: 1518 bp
ATGAAGCGACTGACATTCTCACTCCAATCATCCCTTCTAGTAATATCTCTTATATTTGTCACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAAGCCGACCCAGCGAAGCTTCATCACCTGCATTTGATCCCAAAGATTTTCAGACATTTTATTACAACCAAACTCTTGACCATTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTTCAATATCAGTGCACCAATTCTCGCTTACTTAGGCGCAGAAGAGTCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGGAATCAATCCCATTCGGATCCAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGACTAAAGTATCCCCACGTCGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTCGATGACATTGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCAAGAAGCGAGTGAGACTTGCTACCAAATCATAAAAAAGTCTTGGTCTGAAATTGATAATATTGCTTCTAAGCGTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCAAACTTGCAGACCGTTGACCAAGTCGTCTGAGCTCAAGGACTACTTGAAGTCGATGTATGCTAGGGCAGCTCAATATGATCGTCCACCGAAATATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGCTTCATCTACAGGTGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCGGTCATGCTATGTCAACCGGCCCAGAAACCTAACAGAAACAGACGTGGGGTGGCGATGGCAGACATGTAGCGACTTGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATGTCGATGAATATATCAATAAATGCAAGGCAACCTATGGCGTCCCTCCCAGACCTAATTGGGTGACTACATACTTTGGAGGCCATGACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCGTTTTGGAAGACATATCAGACAGTGTGGTTGCTGTCCATGCAAAAAATGGGTCTCACTGCTTGGATATTCTCACCTCAAACCAGACTACCGATCCAGACTGGCTGGTCAATCAGCGGAAAAGTGAGGTCAAAATCATCAAAGGATGGATAGCTAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

505

Amino Acids

56.75

Weight (kDa)

7.6

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 69 - 484 1.1e-70 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 172, 1001
AasI GACNNNNNNGTC 2 cut(s) 868, 1436
Acc36I ACCTGC 2 cut(s) 172, 1001
AccB7I CCANNNNNTGG 1 cut(s) 282
AciI CCGC 3 cut(s) 957, 1329, 1447
AclWI GGATC 4 cut(s) 167, 444, 457, 1418
AcsI RAATTY 4 cut(s) 81, 528, 839, 1160
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 2 cut(s) 425, 1157
AfiI CCNNNNNNNGG 5 cut(s) 104, 282, 362, 707, 1035
AflIII ACRYGT 2 cut(s) 538, 1100
AgeI ACCGGT 2 cut(s) 420, 1035
AgsI TTSAA 9 cut(s) 223, 244, 254, 295, 395, 496, 740, 892, 1505
AjiI CACGTC 2 cut(s) 640, 1081
AjnI CCWGG 1 cut(s) 452
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
Alw21I GWGCWC 4 cut(s) 307, 420, 655, 879
Alw26I GTCTC 4 cut(s) 746, 1271, 1305, 1389
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 4 cut(s) 167, 444, 457, 1418
AoxI GGCC 4 cut(s) 657, 817, 1055, 1246
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 4 cut(s) 81, 528, 839, 1160
ArsI GACNNNNNNTTYG 4 cut(s) 1152, 1184, 1367, 1399
AsiGI ACCGGT 2 cut(s) 420, 1035
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 1056
AsuHPI GGTGA 6 cut(s) 153, 718, 998, 1126, 1240, 1396
AsuNHI GCTAGC 1 cut(s) 1280
BaeGI GKGCMC 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 614, 647
BamHI GGATCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 655, 879
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbsI GAAGAC 1 cut(s) 1347
Bbv12I GWGCWC 4 cut(s) 307, 420, 655, 879
BbvI GCAGC 1 cut(s) 923
BccI CCATC 3 cut(s) 962, 1086, 1470
BciT130I CCWGG 1 cut(s) 454
BciVI GTATCC 3 cut(s) 482, 642, 704
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 4 cut(s) 746, 1271, 1305, 1389
BfaI CTAG 3 cut(s) 38, 906, 1281
BfmI CTRYAG 3 cut(s) 510, 948, 981
BfuAI ACCTGC 2 cut(s) 172, 1001
BfuI GTATCC 3 cut(s) 482, 642, 704
BisI GCNGC 2 cut(s) 912, 1330
BlsI GCNGC 2 cut(s) 913, 1331
Bme1390I CCNGG 1 cut(s) 454
BmgBI CACGTC 2 cut(s) 640, 1081
BmgT120I GGNCC 1 cut(s) 1056
BmiI GGNNCC 2 cut(s) 368, 451
BmrFI CCNGG 1 cut(s) 454
BmtI GCTAGC 1 cut(s) 1284
BpiI GAAGAC 1 cut(s) 1347
BpmI CTGGAG 4 cut(s) 123, 386, 684, 1255
BpuEI CTTGAG 2 cut(s) 808, 863
BsaHI GRCGYC 1 cut(s) 1206
BsaI GGTCTC 2 cut(s) 1305, 1389
BsaJI CCNNGG 3 cut(s) 86, 453, 729
BsaWI WCCGGW 5 cut(s) 420, 571, 940, 1028, 1035
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 282, 362, 707, 1035
Bse118I RCCGGY 3 cut(s) 420, 1035, 1053
Bse1I ACTGG 2 cut(s) 106, 1436
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 3 cut(s) 86, 453, 729
BseGI GGATG 2 cut(s) 29, 1481
BseLI CCNNNNNNNGG 5 cut(s) 104, 282, 362, 707, 1035
BseMII CTCAG 5 cut(s) 81, 83, 513, 864, 1253
BseNI ACTGG 2 cut(s) 106, 1436
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 923
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 4 cut(s) 659, 819, 1057, 1248
BshTI ACCGGT 2 cut(s) 420, 1035
BsiHKAI GWGCWC 4 cut(s) 307, 420, 655, 879
BsiSI CCGG 6 cut(s) 421, 572, 941, 1029, 1036, 1054
BslFI GGGAC 1 cut(s) 1193
BslI CCNNNNNNNGG 5 cut(s) 104, 282, 362, 707, 1035
BsmAI GTCTC 4 cut(s) 746, 1271, 1305, 1389
BsmFI GGGAC 1 cut(s) 1193
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 4 cut(s) 659, 819, 1057, 1248
Bso31I GGTCTC 2 cut(s) 1305, 1389
Bsp1286I GDGCHC 4 cut(s) 307, 420, 655, 879
Bsp143I GATC 5 cut(s) 172, 267, 449, 922, 1423
BspACI CCGC 3 cut(s) 957, 1329, 1447
BspANI GGCC 4 cut(s) 659, 819, 1057, 1248
BspCNI CTCAG 5 cut(s) 80, 84, 512, 865, 1254
BspLI GGNNCC 2 cut(s) 368, 451
BspMI ACCTGC 2 cut(s) 172, 1001
BspOI GCTAGC 1 cut(s) 1284
BspPI GGATC 4 cut(s) 167, 444, 457, 1418
BspTNI GGTCTC 2 cut(s) 1305, 1389
BsrFI RCCGGY 3 cut(s) 420, 1035, 1053
BsrI ACTGG 2 cut(s) 106, 1436
BssAI RCCGGY 3 cut(s) 420, 1035, 1053
BssECI CCNNGG 3 cut(s) 86, 453, 729
BssMI GATC 5 cut(s) 172, 267, 449, 922, 1423
BssNI GRCGYC 1 cut(s) 1206
BssT1I CCWWGG 2 cut(s) 86, 729
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 5 cut(s) 858, 949, 1155, 1322, 1355
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 1206
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 3 cut(s) 478, 609, 1282
BstDEI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1262, 1307
BstF5I GGATG 2 cut(s) 29, 1481
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 5 cut(s) 175, 270, 452, 925, 1426
BstMAI GTCTC 4 cut(s) 746, 1271, 1305, 1389
BstMBI GATC 5 cut(s) 172, 267, 449, 922, 1423
BstMWI GCNNNNNNNGC 6 cut(s) 147, 521, 650, 665, 911, 1370
BstNI CCWGG 1 cut(s) 454
BstNSI RCATGY 3 cut(s) 542, 560, 1104
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 3 cut(s) 510, 948, 981
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 923
BstV2I GAAGAC 1 cut(s) 1347
BstX2I RGATCY 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 449
BsuI GTATCC 3 cut(s) 482, 642, 704
BsuRI GGCC 4 cut(s) 659, 819, 1057, 1248
BtgZI GCGATG 1 cut(s) 1105
BtrI CACGTC 2 cut(s) 640, 1081
BtsCI GGATG 2 cut(s) 29, 1481
BtsI GCAGTG 1 cut(s) 1387
BtsIMutI CAGTG 3 cut(s) 307, 1360, 1387
BveI ACCTGC 2 cut(s) 172, 1001
Cac8I GCNNGC 3 cut(s) 478, 609, 1282
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 3 cut(s) 420, 1035, 1053
Cfr13I GGNCC 1 cut(s) 1056
CseI GACGC 1 cut(s) 1195
Csp6I GTAC 2 cut(s) 424, 1156
CspAI ACCGGT 2 cut(s) 420, 1035
CviAII CATG 9 cut(s) 119, 539, 557, 615, 1041, 1101, 1144, 1250, 1370
CviQI GTAC 2 cut(s) 424, 1156
DdeI CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1262, 1307
DpnI GATC 5 cut(s) 174, 269, 451, 924, 1425
DpnII GATC 5 cut(s) 172, 267, 449, 922, 1423
DraI TTTAAA 1 cut(s) 469
DrdI GACNNNNNNGTC 2 cut(s) 868, 1436
DseDI GACNNNNNNGTC 2 cut(s) 868, 1436
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Ecl136II GAGCTC 2 cut(s) 653, 877
Eco130I CCWWGG 2 cut(s) 86, 729
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 2 cut(s) 655, 879
Eco31I GGTCTC 2 cut(s) 1305, 1389
Eco53kI GAGCTC 2 cut(s) 653, 877
EcoICRI GAGCTC 2 cut(s) 653, 877
EcoRII CCWGG 1 cut(s) 452
EcoT14I CCWWGG 2 cut(s) 86, 729
EcoT38I GRGCYC 2 cut(s) 655, 879
ErhI CCWWGG 2 cut(s) 86, 729
FaeI CATG 9 cut(s) 122, 542, 560, 618, 1044, 1104, 1147, 1253, 1373
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1300, 1332
FaqI GGGAC 1 cut(s) 1193
FatI CATG 9 cut(s) 118, 538, 556, 614, 1040, 1100, 1143, 1249, 1369
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 912, 1330
FokI GGATG 2 cut(s) 16, 1488
FriOI GRGCYC 2 cut(s) 655, 879
Fsp4HI GCNGC 2 cut(s) 912, 1330
FspBI CTAG 3 cut(s) 38, 906, 1281
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 912, 1330
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 4 cut(s) 123, 386, 684, 1255
HaeIII GGCC 4 cut(s) 659, 819, 1057, 1248
HapII CCGG 6 cut(s) 421, 572, 941, 1029, 1036, 1054
HgaI GACGC 1 cut(s) 1195
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 9 cut(s) 122, 542, 560, 618, 1044, 1104, 1147, 1253, 1373
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 2 cut(s) 861, 1051
HindII GTYRAC 2 cut(s) 861, 1051
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 5 cut(s) 94, 335, 434, 1117, 1264
HpaII CCGG 6 cut(s) 421, 572, 941, 1029, 1036, 1054
HphI GGTGA 6 cut(s) 153, 718, 998, 1126, 1240, 1396
Hpy166II GTNNAC 5 cut(s) 305, 861, 929, 1051, 1132
Hpy188I TCNGA 5 cut(s) 189, 449, 787, 874, 1351
Hpy188III TCNNGA 6 cut(s) 212, 403, 701, 740, 1272, 1427
Hpy8I GTNNAC 5 cut(s) 305, 861, 929, 1051, 1132
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 3 cut(s) 44, 809, 1511
HpyCH4III ACNGT 5 cut(s) 858, 949, 1155, 1322, 1355
HpyCH4IV ACGT 2 cut(s) 639, 1080
HpyCH4V TGCA 9 cut(s) 167, 305, 476, 524, 852, 1010, 1022, 1191, 1373
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 521, 650, 665, 911, 1370
HpyF3I CTNAG 9 cut(s) 67, 92, 322, 499, 807, 830, 873, 1262, 1307
HpySE526I ACGT 2 cut(s) 639, 1080
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 9 cut(s) 122, 542, 560, 618, 1044, 1104, 1147, 1253, 1373
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 5 cut(s) 172, 267, 449, 922, 1423
LmnI GCTCC 3 cut(s) 650, 673, 971
Lsp1109I GCAGC 1 cut(s) 923
MaeI CTAG 3 cut(s) 38, 906, 1281
MaeII ACGT 2 cut(s) 639, 1080
MaeIII GTNAC 5 cut(s) 58, 122, 724, 943, 1228
MalI GATC 5 cut(s) 174, 269, 451, 924, 1425
MboI GATC 5 cut(s) 172, 267, 449, 922, 1423
MboII GAAGA 2 cut(s) 344, 1352
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 4 cut(s) 307, 420, 655, 879
MlyI GAGTC 3 cut(s) 103, 344, 1273
MmeI TCCRAC 1 cut(s) 122
MseI TTAA 2 cut(s) 77, 468
MslI CAYNNNNRTG 2 cut(s) 285, 1127
MspA1I CMGCKG 1 cut(s) 1447
MspI CCGG 6 cut(s) 421, 572, 941, 1029, 1036, 1054
MspR9I CCNGG 1 cut(s) 454
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 6 cut(s) 147, 521, 650, 665, 911, 1370
NdeI CATATG 1 cut(s) 595
NdeII GATC 5 cut(s) 172, 267, 449, 922, 1423
NheI GCTAGC 1 cut(s) 1280
NlaIII CATG 9 cut(s) 122, 542, 560, 618, 1044, 1104, 1147, 1253, 1373
NlaIV GGNNCC 2 cut(s) 368, 451
NmuCI GTSAC 3 cut(s) 58, 724, 1228
NspI RCATGY 3 cut(s) 542, 560, 1104
PaqCI CACCTGC 2 cut(s) 172, 1001
PceI AGGCCT 1 cut(s) 819
PciI ACATGT 2 cut(s) 538, 1100
PctI GAATGC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 434, 1117
PflFI GACNNNGTC 1 cut(s) 865
PflMI CCANNNNNTGG 1 cut(s) 282
PinAI ACCGGT 2 cut(s) 420, 1035
PkrI GCNGC 2 cut(s) 913, 1331
PleI GAGTC 3 cut(s) 102, 343, 1272
PpsI GAGTC 3 cut(s) 102, 343, 1272
PscI ACATGT 2 cut(s) 538, 1100
Psp124BI GAGCTC 2 cut(s) 655, 879
Psp6I CCWGG 1 cut(s) 452
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 368, 451
PspPI GGNCC 1 cut(s) 1056
PsuI RGATCY 1 cut(s) 449
PsyI GACNNNGTC 1 cut(s) 865
RsaI GTAC 2 cut(s) 425, 1157
RsaNI GTAC 2 cut(s) 424, 1156
RseI CAYNNNNRTG 2 cut(s) 285, 1127
SacI GAGCTC 2 cut(s) 655, 879
SaqAI TTAA 2 cut(s) 77, 468
SatI GCNGC 2 cut(s) 912, 1330
Sau3AI GATC 5 cut(s) 172, 267, 449, 922, 1423
Sau96I GGNCC 1 cut(s) 1056
SchI GAGTC 3 cut(s) 103, 344, 1273
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 4 cut(s) 307, 420, 655, 879
SfcI CTRYAG 3 cut(s) 510, 948, 981
SmiMI CAYNNNNRTG 2 cut(s) 285, 1127
SmlI CTYRAG 2 cut(s) 823, 878
SmoI CTYRAG 2 cut(s) 823, 878
SseBI AGGCCT 1 cut(s) 819
SsiI CCGC 3 cut(s) 957, 1329, 1447
SspI AATATT 2 cut(s) 799, 1005
SspMI CTAG 3 cut(s) 38, 906, 1281
SstI GAGCTC 2 cut(s) 655, 879
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 2 cut(s) 86, 729
TaaI ACNGT 5 cut(s) 858, 949, 1155, 1322, 1355
TaiI ACGT 2 cut(s) 642, 1083
TaqI TCGA 4 cut(s) 622, 684, 896, 1170
TauI GCSGC 1 cut(s) 1332
TfiI GAWTC 2 cut(s) 434, 1117
Tru1I TTAA 2 cut(s) 77, 468
Tru9I TTAA 2 cut(s) 77, 468
TscAI CASTG 3 cut(s) 307, 1360, 1394
TseFI GTSAC 3 cut(s) 58, 724, 1228
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 3 cut(s) 58, 724, 1228
TspDTI ATGAA 5 cut(s) 17, 147, 603, 966, 1188
TspRI CASTG 3 cut(s) 307, 1360, 1394
Tth111I GACNNNGTC 1 cut(s) 865
Van91I CCANNNNNTGG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 303
XapI RAATTY 4 cut(s) 81, 528, 839, 1160
XceI RCATGY 3 cut(s) 542, 560, 1104
XcmI CCANNNNNNNNNTGG 2 cut(s) 644, 1376
XspI CTAG 3 cut(s) 38, 906, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.