Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

14522167 .. 14524585

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1151900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAACCCACTCATATCTTTGCTTCAATGCCTTGTACTAATTATTTCTCTCTTTATCACAATCTCAGTTTCTGCTACACTCTTTAACATCCCGCGGCTAAGTCCGAATGCTGGAGCATTCGTACAAGGAAATTATTTTGCACACGACCACCCAAAACCTTTGTCTGCATTTGATCCAGTTACAGAATTTCAAACATTTTATTACAACCAAACACTTGACCATTTCAACTTCAGGCCTGATAGCTTCAATACTTTTCAGCAAAGATATTTGATCAATTTCAAGCATTGGGGAGGCTCCAATATCAGCGCACCAATATTTGCTTACCTTGGTGAAGAAGAAGCCATTGATGTTGATCTATCTATTATTGGCTTTCTTAGTGAAAACGCCGATCAGTTTCAAGCTCTCCAGATATTTATCGAGCACCGTTACTATGGGCAATCAGTCCCATTTAGATCAAGGGAAGAGGCATTTAAAAATGCAAGCACTATTGGGTACTTCAACTCAGCTCAAGCAATGGCAGATTATGCAGAGATCCTCATACATGTAAAGAAGCAACTCCGCGCTGAACATTCTCCGGTGATTGTTATCGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATATCCCCATGTCGCTCTAGGAGCTCTAGCCTCATCAGCTCCAATTCTGTACTTTGAGGACATTATTCCACCTGAAAAAGGATATTATTCAATTGTTACCAAAGATTTTCAAGAAGCCAGTGAAACTTGCTACCAGACCATAAAAAAGTCGTGGTCCGAAATTGATGATATTGCTTCCAAGCCTGAAGGCCTCTCATTTCTTAGCAACAAATTCCGCACTTGCAGGTTGTCTGAGCTGAAGAACTACTTGGATAGTTTGTATTGTGAGGCAGCTCAATACAATAGTCCACCAAGTTATCCAGTTACTGTTGTCTGTGGCGGAATTGATGGAGTTTCTTCTGGAAATGATACTCTAAGCAAAATATTTGCAGGTGTTGTTGCATATTATGGAAACAGGTCGTGCTATGTTAATGAACCCAGAAACCTATCTGAAACAGATGTAGGGTGGCGTTGGCAGGTAATTACGTATATCTTGTCACCTTATCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

375

Amino Acids

42.17

Weight (kDa)

5.4

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	70 - 293	4e-49	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	992
Acc36I	ACCTGC	3 cut(s)	846, 992, 1078
AccII	CGCG	2 cut(s)	94, 561
AciI	CCGC	5 cut(s)	92, 94, 559, 847, 951
AclWI	GGATC	2 cut(s)	167, 526
AcsI	RAATTY	2 cut(s)	185, 842
AcuI	CTGAAG	3 cut(s)	214, 837, 890
AfaI	GTAC	4 cut(s)	36, 123, 494, 683
AfiI	CCNNNNNNNGG	2 cut(s)	110, 710
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	9 cut(s)	26, 191, 226, 247, 280, 398, 499, 723, 743
AjuI	GAANNNNNNNTTGG	2 cut(s)	863, 895
AluBI	AGCT	7 cut(s)	243, 401, 506, 656, 671, 868, 905
AluI	AGCT	7 cut(s)	243, 401, 506, 656, 671, 868, 905
Alw21I	GWGCWC	2 cut(s)	423, 658
AlwI	GGATC	2 cut(s)	167, 526
AlwNI	CAGNNNCTG	2 cut(s)	71, 938
AoxI	GGCC	2 cut(s)	233, 820
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	2 cut(s)	185, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	2 cut(s)	308, 563
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	3 cut(s)	341, 589, 1101
AvaII	GGWCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	423, 658
BbvI	GCAGC	1 cut(s)	914
BccI	CCATC	1 cut(s)	953
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	2 cut(s)	650, 659
BfuAI	ACCTGC	3 cut(s)	846, 992, 1078
BisI	GCNGC	2 cut(s)	95, 903
BlsI	GCNGC	2 cut(s)	96, 904
Bme18I	GGWCC	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	602
BpmI	CTGGAG	2 cut(s)	132, 389
BpuEI	CTTGAG	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	1098
BsaBI	GATNNNNATC	3 cut(s)	351, 413, 584
BsaJI	CCNNGG	2 cut(s)	92, 325
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 710
Bse1I	ACTGG	3 cut(s)	176, 750, 932
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	3 cut(s)	351, 413, 584
BseDI	CCNNGG	2 cut(s)	92, 325
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	3 cut(s)	351, 413, 584
BseLI	CCNNNNNNNGG	2 cut(s)	110, 710
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	3 cut(s)	78, 516, 855
BseNI	ACTGG	3 cut(s)	176, 750, 932
BseXI	GCAGC	1 cut(s)	914
Bsh1236I	CGCG	2 cut(s)	94, 561
BshFI	GGCC	2 cut(s)	235, 822
BsiHKAI	GWGCWC	2 cut(s)	423, 658
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	110, 710
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	3 cut(s)	112, 116, 612
BsnI	GGCC	2 cut(s)	235, 822
Bsp1286I	GDGCHC	2 cut(s)	423, 658
Bsp143I	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
BspACI	CCGC	5 cut(s)	92, 94, 559, 847, 951
BspANI	GGCC	2 cut(s)	235, 822
BspCNI	CTCAG	3 cut(s)	77, 515, 856
BspFNI	CGCG	2 cut(s)	94, 561
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	3 cut(s)	846, 992, 1078
BspPI	GGATC	2 cut(s)	167, 526
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	3 cut(s)	176, 750, 932
BssECI	CCNNGG	2 cut(s)	92, 325
BssMI	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	425, 940
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	1098
BstC8I	GCNNGC	2 cut(s)	481, 612
BstDEI	CTNAG	7 cut(s)	64, 98, 374, 502, 833, 864, 986
BstDSI	CCRYGG	1 cut(s)	92
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	94, 561
BstHHI	GCGC	2 cut(s)	308, 563
BstKTI	GATC	6 cut(s)	175, 273, 355, 391, 455, 534
BstMBI	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 653, 668
BstNSI	RCATGY	1 cut(s)	545
BstSNI	TACGTA	1 cut(s)	1098
BstUI	CGCG	2 cut(s)	94, 561
BstV1I	GCAGC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	235, 822
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	757
BveI	ACCTGC	3 cut(s)	846, 992, 1078
Cac8I	GCNNGC	2 cut(s)	481, 612
CaiI	CAGNNNCTG	2 cut(s)	71, 938
CfoI	GCGC	2 cut(s)	308, 563
Cfr13I	GGNCC	1 cut(s)	786
Cfr42I	CCGCGG	1 cut(s)	95
Csp6I	GTAC	4 cut(s)	35, 122, 493, 682
CviAII	CATG	3 cut(s)	542, 618, 641
CviQI	GTAC	4 cut(s)	35, 122, 493, 682
DdeI	CTNAG	7 cut(s)	64, 98, 374, 502, 833, 864, 986
DpnI	GATC	6 cut(s)	174, 272, 354, 390, 454, 533
DpnII	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	966
Ecl136II	GAGCTC	1 cut(s)	656
Eco105I	TACGTA	1 cut(s)	1098
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	2 cut(s)	235, 822
Eco24I	GRGCYC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	656
Eco57I	CTGAAG	3 cut(s)	214, 837, 890
EcoICRI	GAGCTC	1 cut(s)	656
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	545, 621, 644
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	541, 617, 640
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	95, 903
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	2 cut(s)	95, 903
FspBI	CTAG	2 cut(s)	650, 659
GlaI	GCGC	2 cut(s)	307, 562
GluI	GCNGC	2 cut(s)	95, 903
GsuI	CTGGAG	2 cut(s)	132, 389
HaeIII	GGCC	2 cut(s)	235, 822
HapII	CCGG	1 cut(s)	575
HhaI	GCGC	2 cut(s)	308, 563
Hin1II	CATG	3 cut(s)	545, 621, 644
Hin6I	GCGC	2 cut(s)	306, 561
HinP1I	GCGC	2 cut(s)	306, 561
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	3 cut(s)	341, 589, 1101
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	4 cut(s)	105, 790, 865, 1063
Hpy188III	TCNNGA	3 cut(s)	406, 743, 972
Hpy8I	GTNNAC	1 cut(s)	920
HpyAV	CCTTC	1 cut(s)	812
HpyCH4III	ACNGT	2 cut(s)	425, 940
HpyCH4IV	ACGT	1 cut(s)	1097
HpyCH4V	TGCA	8 cut(s)	140, 167, 479, 527, 593, 855, 1001, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 653, 668
HpyF3I	CTNAG	7 cut(s)	64, 98, 374, 502, 833, 864, 986
HpySE526I	ACGT	1 cut(s)	1097
Hsp92II	CATG	3 cut(s)	545, 621, 644
HspAI	GCGC	2 cut(s)	306, 561
Ksp22I	TGATCA	1 cut(s)	270
KspI	CCGCGG	1 cut(s)	95
Kzo9I	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
LmnI	GCTCC	4 cut(s)	113, 299, 653, 676
Lsp1109I	GCAGC	1 cut(s)	914
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	650, 659
MaeII	ACGT	1 cut(s)	1097
MaeIII	GTNAC	5 cut(s)	178, 425, 727, 934, 1107
MalI	GATC	6 cut(s)	174, 272, 354, 390, 454, 533
MboI	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
MboII	GAAGA	5 cut(s)	344, 347, 473, 883, 960
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	423, 658
MnlI	CCTC	7 cut(s)	284, 457, 545, 673, 682, 833, 892
MseI	TTAA	4 cut(s)	84, 471, 1041, 1119
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	3 cut(s)	112, 116, 612
MvnI	CGCG	2 cut(s)	94, 561
MwoI	GCNNNNNNNGC	3 cut(s)	524, 653, 668
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
NlaIII	CATG	3 cut(s)	545, 621, 644
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	1107
NspI	RCATGY	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	992
PceI	AGGCCT	2 cut(s)	235, 822
PciI	ACATGT	1 cut(s)	541
PctI	GAATGC	3 cut(s)	112, 116, 612
PkrI	GCNGC	2 cut(s)	96, 904
Ppu21I	YACGTR	1 cut(s)	1098
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	786
PstNI	CAGNNNCTG	2 cut(s)	71, 938
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	4 cut(s)	36, 123, 494, 683
RsaNI	GTAC	4 cut(s)	35, 122, 493, 682
SacI	GAGCTC	1 cut(s)	658
SacII	CCGCGG	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	84, 471, 1041, 1119
SatI	GCNGC	2 cut(s)	95, 903
Sau3AI	GATC	6 cut(s)	172, 270, 352, 388, 452, 531
Sau96I	GGNCC	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	423, 658
SfaNI	GCATC	1 cut(s)	602
Sfr303I	CCGCGG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
SnaBI	TACGTA	1 cut(s)	1098
SseBI	AGGCCT	2 cut(s)	235, 822
SsiI	CCGC	5 cut(s)	92, 94, 559, 847, 951
SspI	AATATT	2 cut(s)	315, 996
SspMI	CTAG	2 cut(s)	650, 659
SstI	GAGCTC	1 cut(s)	658
StuI	AGGCCT	2 cut(s)	235, 822
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	425, 940
TaiI	ACGT	1 cut(s)	1100
TaqI	TCGA	1 cut(s)	417
TatI	WGTACW	2 cut(s)	34, 681
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	84, 471, 1041, 1119
Tru9I	TTAA	4 cut(s)	84, 471, 1041, 1119
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	1107
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	1107
TspDTI	ATGAA	3 cut(s)	17, 606, 1059
TspRI	CASTG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	2 cut(s)	185, 842
XceI	RCATGY	1 cut(s)	545
XspI	CTAG	2 cut(s)	650, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.