Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001787.1

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Reverse (-)

86401 .. 88185

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001787.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgtttcgatcacaccaatcgaaagctttgtctgcatttgatgcaactgaatacgaaacattctattacaaccaaacacttgatcatttcaacttcagacctgatagcttctctacttttcaacaaaaatatgtgatcaattccaagtactggggtggttccaatattagtgcaccaatatttgcttaccttggcgcagaaacatcattggatagtgttatatcttatactggctttctccctgaaaacgccaatcagtttcaagctctcctcatatatatagagcaccggtactacggagaatcaatcccattcggctctagaacagaagcatttcaaaatgcaagcactcttggctacttcaactcagcccaagctctagcagattatgctgagatcctcatacatgtaaagacgcaactgaatgctggacattctccggtcattgttattggtgcatcatatggtggaatgcttgcttcatggtttcggctaaaatacccccatatcgctcttggagctctagcttcatcggctccgattatttactttgatgacattattccgccagaaaatggatacttctccattgtcacgaaggattttcgagaagctagtgagacttgctaccaaaccataaaacagtcttggtctgaaattgatgcacttgcttctatgcctgatggtctctcaaatcttagcaaaatgttccacacttgcagtcccttgagcgcggcatcctatctcaagtactccttgcagtcaatgtacatgaaggcagctcagttcgatgatccatcaacaaatccagttaatatgatctgcaatggtattgatggagcttcttcaactaatgatactcttgcgaaaatatttgctggccttgttgcaattgcaggaaacaactcatgctaccttaatgatgcacccagtagtactaatgcattaccaagcagtactaacgatgatgaaacatctgtgggatggagttggcaggcatgtagtgaaatggtgatcccggtttttgctatcggcaacaacaccatgttccaaccttcttcttttgacccgcaaagctacaataacaactgcaaggcacagtatggcgtcccttctcgccctaattgggtcactacatattacggaggccatgtatgtaaaatcggaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

390

Amino Acids

42.97

Weight (kDa)

5.01

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	150, 575
AccII	CGCG	1 cut(s)	734
AciI	CCGC	3 cut(s)	566, 734, 1070
AclWI	GGATC	3 cut(s)	391, 788, 1009
AcuI	CTGAAG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	1107
AfaI	GTAC	6 cut(s)	149, 293, 752, 770, 937, 958
AfiI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
AflIII	ACRYGT	1 cut(s)	406
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	6 cut(s)	91, 122, 263, 338, 364, 849
Alw21I	GWGCWC	3 cut(s)	175, 288, 523
Alw26I	GTCTC	2 cut(s)	614, 692
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	3 cut(s)	391, 788, 1009
AoxI	GGCC	2 cut(s)	880, 1147
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	779
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AsiGI	ACCGGT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	197, 734
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	1 cut(s)	1024
BaeGI	GKGCMC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	523
Bbv12I	GWGCWC	3 cut(s)	175, 288, 523
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	4 cut(s)	677, 805, 830, 978
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	2 cut(s)	82, 135
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	614, 692
BfaI	CTAG	4 cut(s)	321, 380, 524, 615
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	2 cut(s)	735, 780
BlsI	GCNGC	2 cut(s)	736, 781
BmcAI	AGTACT	4 cut(s)	149, 752, 937, 958
Bme1390I	CCNGG	1 cut(s)	1019
BmiI	GGNNCC	2 cut(s)	160, 537
BmrFI	CCNGG	1 cut(s)	1019
BmrI	ACTGGG	2 cut(s)	160, 924
BmsI	GCATC	5 cut(s)	31, 467, 652, 746, 913
BmuI	ACTGGG	2 cut(s)	160, 924
BpuEI	CTTGAG	2 cut(s)	731, 748
BpuMI	CCSGG	1 cut(s)	1019
BsaHI	GRCGYC	1 cut(s)	1107
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	288, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	1137, 1167
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	4 cut(s)	155, 235, 809, 930
Bse3DI	GCAATG	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	737, 989
BseLI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	3 cut(s)	381, 384, 797
BseNI	ACTGG	4 cut(s)	155, 235, 809, 930
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	2 cut(s)	882, 1149
BshTI	ACCGGT	1 cut(s)	288
BsiHKAI	GWGCWC	3 cut(s)	175, 288, 523
BsiSI	CCGG	3 cut(s)	289, 440, 1019
BslFI	GGGAC	2 cut(s)	708, 1094
BslI	CCNNNNNNNGG	3 cut(s)	150, 575, 1126
BsmAI	GTCTC	2 cut(s)	614, 692
BsmFI	GGGAC	2 cut(s)	708, 1094
BsmI	GAATGC	2 cut(s)	430, 477
BsnI	GGCC	2 cut(s)	882, 1149
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	3 cut(s)	175, 288, 523
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
BspACI	CCGC	3 cut(s)	566, 734, 1070
BspANI	GGCC	2 cut(s)	882, 1149
BspCNI	CTCAG	3 cut(s)	380, 385, 796
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	2 cut(s)	160, 537
BspPI	GGATC	3 cut(s)	391, 788, 1009
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	4 cut(s)	155, 235, 809, 930
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
BssNI	GRCGYC	1 cut(s)	1107
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	645, 1101
BstACI	GRCGYC	1 cut(s)	1107
BstAPI	GCANNNNNTGC	2 cut(s)	41, 389
BstAUI	TGTACA	1 cut(s)	768
BstC8I	GCNNGC	4 cut(s)	346, 477, 880, 996
BstDEI	CTNAG	4 cut(s)	367, 393, 698, 783
BstF5I	GGATG	2 cut(s)	737, 989
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	2 cut(s)	197, 734
BstKTI	GATC	7 cut(s)	11, 85, 138, 399, 796, 822, 1017
BstMAI	GTCTC	2 cut(s)	614, 692
BstMBI	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 41, 354, 389, 518, 533
BstNSI	RCATGY	2 cut(s)	410, 1002
BstSCI	CCNGG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	882, 1149
BtsCI	GGATG	2 cut(s)	737, 989
Cac8I	GCNNGC	4 cut(s)	346, 477, 880, 996
CfoI	GCGC	2 cut(s)	197, 734
Cfr10I	RCCGGY	1 cut(s)	288
CseI	GACGC	2 cut(s)	424, 1096
Csp6I	GTAC	6 cut(s)	148, 292, 751, 769, 936, 957
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	7 cut(s)	407, 483, 772, 909, 999, 1045, 1151
CviQI	GTAC	6 cut(s)	148, 292, 751, 769, 936, 957
DdeI	CTNAG	4 cut(s)	367, 393, 698, 783
DpnI	GATC	7 cut(s)	10, 84, 137, 398, 795, 821, 1016
DpnII	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
EciI	GGCGGA	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	946
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	2 cut(s)	708, 1094
FatI	CATG	7 cut(s)	406, 482, 771, 908, 998, 1044, 1150
FauI	CCCGC	1 cut(s)	1077
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	2 cut(s)	82, 135
Fnu4HI	GCNGC	2 cut(s)	735, 780
FokI	GGATG	2 cut(s)	724, 996
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	735, 780
FspBI	CTAG	4 cut(s)	321, 380, 524, 615
GlaI	GCGC	2 cut(s)	196, 733
GluI	GCNGC	2 cut(s)	735, 780
HaeIII	GGCC	2 cut(s)	882, 1149
HapII	CCGG	3 cut(s)	289, 440, 1019
HgaI	GACGC	2 cut(s)	424, 1096
HhaI	GCGC	2 cut(s)	197, 734
Hin1I	GRCGYC	1 cut(s)	1107
Hin1II	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
Hin6I	GCGC	2 cut(s)	195, 732
HinP1I	GCGC	2 cut(s)	195, 732
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	3 cut(s)	289, 440, 1019
HphI	GGTGA	1 cut(s)	1024
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	98, 540, 655, 1166
Hpy188III	TCNNGA	3 cut(s)	321, 595, 608
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	592, 769, 1065, 1122
HpyCH4III	ACNGT	2 cut(s)	645, 1101
HpyCH4IV	ACGT	1 cut(s)	1169
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 41, 354, 389, 518, 533
HpyF3I	CTNAG	4 cut(s)	367, 393, 698, 783
HpySE526I	ACGT	1 cut(s)	1169
Hsp92I	GRCGYC	1 cut(s)	1107
Hsp92II	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
HspAI	GCGC	2 cut(s)	195, 732
Ksp22I	TGATCA	2 cut(s)	82, 135
Kzo9I	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
LmnI	GCTCC	3 cut(s)	518, 541, 839
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	5 cut(s)	31, 467, 652, 746, 913
MaeI	CTAG	4 cut(s)	321, 380, 524, 615
MaeII	ACGT	1 cut(s)	1169
MaeIII	GTNAC	2 cut(s)	592, 1129
MalI	GATC	7 cut(s)	10, 84, 137, 398, 795, 821, 1016
MboI	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
MboII	GAAGA	2 cut(s)	837, 1050
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	3 cut(s)	175, 288, 523
MluCI	AATT	4 cut(s)	139, 657, 891, 1123
MmeI	TCCRAC	1 cut(s)	1075
MnlI	CCTC	3 cut(s)	281, 410, 1139
Mph1103I	ATGCAT	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	813, 918
MspI	CCGG	3 cut(s)	289, 440, 1019
MspR9I	CCNGG	1 cut(s)	1019
MunI	CAATTG	1 cut(s)	891
Mva1269I	GAATGC	2 cut(s)	430, 477
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	6 cut(s)	32, 41, 354, 389, 518, 533
NciI	CCSGG	1 cut(s)	1019
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
NlaIII	CATG	7 cut(s)	410, 486, 775, 912, 1002, 1048, 1154
NlaIV	GGNNCC	2 cut(s)	160, 537
NmuCI	GTSAC	2 cut(s)	592, 1129
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	410, 1002
PciI	ACATGT	1 cut(s)	406
PctI	GAATGC	2 cut(s)	430, 477
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	302
PflMI	CCANNNNNTGG	2 cut(s)	150, 575
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	736, 781
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	160, 537
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	6 cut(s)	149, 293, 752, 770, 937, 958
RsaNI	GTAC	6 cut(s)	148, 292, 751, 769, 936, 957
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	813, 918
SatI	GCNGC	2 cut(s)	735, 780
Sau3AI	GATC	7 cut(s)	8, 82, 135, 396, 793, 819, 1014
ScaI	AGTACT	4 cut(s)	149, 752, 937, 958
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	3 cut(s)	175, 288, 523
SfaNI	GCATC	5 cut(s)	31, 467, 652, 746, 913
SmlI	CTYRAG	2 cut(s)	727, 746
SmoI	CTYRAG	2 cut(s)	727, 746
Sse9I	AATT	4 cut(s)	139, 657, 891, 1123
SsiI	CCGC	3 cut(s)	566, 734, 1070
SspI	AATATT	3 cut(s)	166, 180, 873
SspMI	CTAG	4 cut(s)	321, 380, 524, 615
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	645, 1101
TaiI	ACGT	1 cut(s)	1172
TaqI	TCGA	4 cut(s)	7, 20, 607, 789
TasI	AATT	4 cut(s)	139, 657, 891, 1123
TatI	WGTACW	5 cut(s)	147, 750, 768, 935, 956
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	813, 918
Tru9I	TTAA	2 cut(s)	813, 918
TseFI	GTSAC	2 cut(s)	592, 1129
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	592, 1129
TspDTI	ATGAA	4 cut(s)	471, 519, 788, 984
TspGWI	ACGGA	2 cut(s)	312, 1158
Van91I	CCANNNNNTGG	2 cut(s)	150, 575
VneI	GTGCAC	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	2 cut(s)	410, 1002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	4 cut(s)	321, 380, 524, 615
ZrmI	AGTACT	4 cut(s)	149, 752, 937, 958
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.