Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

31382232 .. 31385686

Gene Structure 3455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG163500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCATTCGAAACACAACTGCTGCCTCCAAGGATTTCCCATAACATTGAAATGAAGCAACTCACATTCTCACTCCAATCATCCCTTCTATTAATATCTCTTATATTTGACACAACCTCAGTTTCCTTAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACTATTGGACACAAGGCCGACCCAGCGAAGCTTTATCATCTGCATTTGATCCCAAAGATCTTCAGACATGTTACTACAACCAAACACTTGACCACTTCAACTTTAGGTATGATAGCTTCAATACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCTATACTCGCTTACTTAGGCGCAGAAGAATCACTTGATGATGATATACCTAATATTGGGTTCCTACCTGAAAACGCCATTCACTTTCAAGCGCTCCAGATATATATAGAGCACCGGTACTATGGGAAATCAATCCCATTCGGATCAACGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATATTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAGCTACATGCTGAACGTTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGTCTAAAGTATCCTCACGTTGCTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTTGATGACATAGTTCCTCCAGAAACAGGATACTACTCCATTGTCACCAAGGATTTTCGAGAAGCTAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATAATGTTGCTTCTAAGCCTGAAGGCCTCTCATGTCTTAGCAAGAAATTCCGAACTTGCAGGTGTGGTTGCATATTTCGGAAACCTGTCATGCTATGTAACAGAAAGACACGAGGGGTGGGCCTGGCAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

326

Amino Acids

36.68

Weight (kDa)

8.08

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	86 - 301	3.3e-49	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	894
AccB7I	CCANNNNNTGG	1 cut(s)	333
AclI	AACGTT	1 cut(s)	616
AclWI	GGATC	2 cut(s)	218, 508
AcsI	RAATTY	3 cut(s)	132, 579, 890
AcuI	CTGAAG	2 cut(s)	221, 885
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	450
AfiI	CCNNNNNNNGG	4 cut(s)	155, 333, 413, 758
AflIII	ACRYGT	3 cut(s)	242, 589, 975
AgeI	ACCGGT	1 cut(s)	471
AgsI	TTSAA	6 cut(s)	50, 274, 295, 305, 446, 547
AjnI	CCWGG	1 cut(s)	966
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	7 cut(s)	206, 291, 560, 604, 704, 719, 797
AluI	AGCT	7 cut(s)	206, 291, 560, 604, 704, 719, 797
Alw21I	GWGCWC	3 cut(s)	358, 471, 706
Alw26I	GTCTC	1 cut(s)	797
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	218, 508
Aor51HI	AGCGCT	1 cut(s)	450
AoxI	GGCC	4 cut(s)	190, 708, 868, 964
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	22, 601
ApoI	RAATTY	3 cut(s)	132, 579, 890
AseI	ATTAAT	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	380, 451
AspS9I	GGNCC	1 cut(s)	964
AsuHPI	GGTGA	1 cut(s)	769
AsuII	TTCGAA	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	706
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	954
Bbv12I	GWGCWC	3 cut(s)	358, 471, 706
BbvI	GCAGC	2 cut(s)	9, 613
BciT130I	CCWGG	1 cut(s)	968
BciVI	GTATCC	2 cut(s)	693, 755
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	894
BfuI	GTATCC	2 cut(s)	693, 755
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	2 cut(s)	23, 602
BlsI	GCNGC	2 cut(s)	24, 603
Bme1390I	CCNGG	1 cut(s)	968
BmgT120I	GGNCC	1 cut(s)	964
BmiI	GGNNCC	2 cut(s)	343, 419
BmrFI	CCNGG	1 cut(s)	968
BpmI	CTGGAG	3 cut(s)	174, 437, 735
Bpu14I	TTCGAA	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	29, 137, 780
BsaWI	WCCGGW	2 cut(s)	471, 622
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 333, 413, 758
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	968
BseDI	CCNNGG	3 cut(s)	29, 137, 780
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	155, 333, 413, 758
BseMII	CTCAG	3 cut(s)	132, 134, 564
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	9, 613
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	4 cut(s)	192, 710, 870, 966
BshTI	ACCGGT	1 cut(s)	471
BsiHKAI	GWGCWC	3 cut(s)	358, 471, 706
BsiSI	CCGG	2 cut(s)	472, 623
BslI	CCNNNNNNNGG	4 cut(s)	155, 333, 413, 758
BsmAI	GTCTC	1 cut(s)	797
BsmI	GAATGC	2 cut(s)	5, 660
BsnI	GGCC	4 cut(s)	192, 710, 870, 966
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	358, 471, 706
Bsp143I	GATC	4 cut(s)	223, 232, 318, 500
BspANI	GGCC	4 cut(s)	192, 710, 870, 966
BspCNI	CTCAG	3 cut(s)	131, 135, 563
BspLI	GGNNCC	2 cut(s)	343, 419
BspMI	ACCTGC	1 cut(s)	894
BspPI	GGATC	2 cut(s)	218, 508
BspT104I	TTCGAA	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	29, 137, 780
BssMI	GATC	4 cut(s)	223, 232, 318, 500
BssSI	CACGAG	1 cut(s)	954
BssT1I	CCWWGG	3 cut(s)	29, 137, 780
Bst2BI	CACGAG	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	968
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	529, 660
BstDEI	CTNAG	6 cut(s)	118, 143, 373, 550, 858, 881
BstF5I	GGATG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	380, 451
BstKTI	GATC	4 cut(s)	226, 235, 321, 503
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	4 cut(s)	223, 232, 318, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 572, 701, 716
BstNI	CCWGG	1 cut(s)	968
BstNSI	RCATGY	4 cut(s)	246, 593, 611, 979
BstSCI	CCNGG	1 cut(s)	966
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	9, 613
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	2 cut(s)	693, 755
BsuRI	GGCC	4 cut(s)	192, 710, 870, 966
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	2 cut(s)	529, 660
CfoI	GCGC	2 cut(s)	380, 451
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	964
Csp6I	GTAC	1 cut(s)	475
CspAI	ACCGGT	1 cut(s)	471
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	8 cut(s)	170, 243, 590, 608, 666, 876, 934, 976
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	6 cut(s)	118, 143, 373, 550, 858, 881
DpnI	GATC	4 cut(s)	225, 234, 320, 502
DpnII	GATC	4 cut(s)	223, 232, 318, 500
DraI	TTTAAA	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	704
Eco130I	CCWWGG	3 cut(s)	29, 137, 780
Eco147I	AGGCCT	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	706
Eco47III	AGCGCT	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	704
Eco57I	CTGAAG	2 cut(s)	221, 885
EcoICRI	GAGCTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	966
EcoT14I	CCWWGG	3 cut(s)	29, 137, 780
EcoT38I	GRGCYC	1 cut(s)	706
ErhI	CCWWGG	3 cut(s)	29, 137, 780
FaeI	CATG	8 cut(s)	173, 246, 593, 611, 669, 879, 937, 979
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	8 cut(s)	169, 242, 589, 607, 665, 875, 933, 975
FauNDI	CATATG	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	23, 602
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	2 cut(s)	23, 602
FspBI	CTAG	1 cut(s)	798
GlaI	GCGC	2 cut(s)	379, 450
GluI	GCNGC	2 cut(s)	23, 602
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	3 cut(s)	174, 437, 735
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	4 cut(s)	192, 710, 870, 966
HapII	CCGG	2 cut(s)	472, 623
HhaI	GCGC	2 cut(s)	380, 451
Hin1II	CATG	8 cut(s)	173, 246, 593, 611, 669, 879, 937, 979
Hin6I	GCGC	2 cut(s)	378, 449
HinP1I	GCGC	2 cut(s)	378, 449
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	2 cut(s)	145, 386
HpaII	CCGG	2 cut(s)	472, 623
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	5 cut(s)	240, 500, 838, 896, 924
Hpy188III	TCNNGA	3 cut(s)	454, 752, 791
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	95, 860
HpyCH4IV	ACGT	2 cut(s)	616, 690
HpyCH4V	TGCA	6 cut(s)	218, 356, 527, 575, 903, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 572, 701, 716
HpyF3I	CTNAG	6 cut(s)	118, 143, 373, 550, 858, 881
HpySE526I	ACGT	2 cut(s)	616, 690
Hsp92II	CATG	8 cut(s)	173, 246, 593, 611, 669, 879, 937, 979
HspAI	GCGC	2 cut(s)	378, 449
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	223, 232, 318, 500
LmnI	GCTCC	4 cut(s)	347, 456, 701, 724
Lsp1109I	GCAGC	2 cut(s)	9, 613
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	2 cut(s)	616, 690
MaeIII	GTNAC	4 cut(s)	173, 245, 775, 941
MalI	GATC	4 cut(s)	225, 234, 320, 502
MboI	GATC	4 cut(s)	223, 232, 318, 500
MboII	GAAGA	2 cut(s)	227, 395
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	358, 471, 706
MluCI	AATT	7 cut(s)	132, 161, 322, 579, 723, 840, 890
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	8 cut(s)	36, 127, 149, 696, 721, 759, 881, 950
MseI	TTAA	3 cut(s)	92, 128, 519
MslI	CAYNNNNRTG	2 cut(s)	50, 336
MspI	CCGG	2 cut(s)	472, 623
MspR9I	CCNGG	1 cut(s)	968
Mva1269I	GAATGC	2 cut(s)	5, 660
MvaI	CCWGG	1 cut(s)	968
MwoI	GCNNNNNNNGC	4 cut(s)	198, 572, 701, 716
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	4 cut(s)	223, 232, 318, 500
NlaIII	CATG	8 cut(s)	173, 246, 593, 611, 669, 879, 937, 979
NlaIV	GGNNCC	2 cut(s)	343, 419
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	4 cut(s)	246, 593, 611, 979
NspV	TTCGAA	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	894
PceI	AGGCCT	1 cut(s)	870
PciI	ACATGT	3 cut(s)	242, 589, 975
PctI	GAATGC	2 cut(s)	5, 660
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	24, 603
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PscI	ACATGT	3 cut(s)	242, 589, 975
PshBI	ATTAAT	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	966
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	966
PspN4I	GGNNCC	2 cut(s)	343, 419
PspPI	GGNCC	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	50, 336
SacI	GAGCTC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	92, 128, 519
SatI	GCNGC	2 cut(s)	23, 602
Sau3AI	GATC	4 cut(s)	223, 232, 318, 500
Sau96I	GGNCC	1 cut(s)	964
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	3 cut(s)	358, 471, 706
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	50, 336
Sse9I	AATT	7 cut(s)	132, 161, 322, 579, 723, 840, 890
SseBI	AGGCCT	1 cut(s)	870
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	798
SstI	GAGCTC	1 cut(s)	706
StuI	AGGCCT	1 cut(s)	870
StyD4I	CCNGG	1 cut(s)	966
StyI	CCWWGG	3 cut(s)	29, 137, 780
TaiI	ACGT	2 cut(s)	619, 693
TaqI	TCGA	2 cut(s)	9, 790
TasI	AATT	7 cut(s)	132, 161, 322, 579, 723, 840, 890
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	92, 128, 519
Tru9I	TTAA	3 cut(s)	92, 128, 519
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	2 cut(s)	22, 601
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	2 cut(s)	68, 654
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	333
VneI	GTGCAC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	3 cut(s)	132, 579, 890
XceI	RCATGY	4 cut(s)	246, 593, 611, 979
XspI	CTAG	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.