Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

11336043 .. 11339315

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAACTGTCTCATATCTTTGCTTCAATGCCTTGTACTAATTATTTCTCTCTTTATCACAATCTCAGTTTCTGCTAAACCTTTAAACATCCCGCTGCTAAGTCCGAATGCTGGAACATTTGTACAAGGAAATTCTTTTGCACACGACCACCCAAAACCTTTGTCTGCATTTGATCCAGCTACAGAATTTGAAACATTTTATTACAACCAAGCACTTGACCATTTCAACTCCAGGCCTGATAGCTTCAATACTTTTCAGCAAAGATATTTGATCAATTTCAAGCATTGGGGAGGCTCCAATATCAGCGCGCCAATATTTGCTTACCTTGGTGAAGAAGAAGCCATTGATGCTGATCTATCTATTATTGGCTTTCTTAGTGAAAATGCCAATCAGTTTCAAGCTCTCCAGATATTTATCGAGCACCGTTACTATGGGCAATCAGTCCCATTTGGATCGATCGAAGACGCATTTAAAAATGCAAGCACTATTGGGTACTTCAACTCAGCTCAAGCAATGGCAGATTATGCAGAGATCCTCATACATGTAAAGAAGCAACTCCGCGCTGAACATTCTCCGGTGATTGTTATCGGTGCATCATATGGTGGAATGCTTGCTTCATGGTTTCGGCTAAAATATCCCCATTTTGATAACATTATTCCACCAGAAAAAGGATATTACTCAATTGTTACCAAAGATTTTCAAGAAGCCAGTGAAACTTGCTACCAAACCATAAAAAAGTCGTGGTCCGAAATTGATGATATTGCTTCCAAGCCTGAAGGCCTCTCATTTCTTAGCAACAAATTCCACACTTGCAGTCCGTTGACCACGTCGTCTGATCTGAAGAACTACTTGGATGGTTTGTATTGTGGGGCAGCTCAATACAATAGTCCACCAAGTTATCCAGTTACTGTTTTCTGTGGCGGCATTGATGGAGTGTCTTCTGGAAATGATACTCTAAGCAAAATATTTGCAGGTGTTGTTGCATATAGTGGAAATAGGTCGTGCTATGTTAATGAACCCAGAAACCTATCTGAAACAGATGTAGGGTGGAGTTGGCAGAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

356

Amino Acids

39.47

Weight (kDa)

5.24

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	962
AasI	GACNNNNNNGTC	1 cut(s)	829
Acc36I	ACCTGC	1 cut(s)	962
AccII	CGCG	2 cut(s)	308, 561
AciI	CCGC	3 cut(s)	92, 559, 921
AclWI	GGATC	3 cut(s)	167, 460, 526
AcsI	RAATTY	3 cut(s)	130, 185, 800
AcuI	CTGAAG	2 cut(s)	795, 860
AfaI	GTAC	3 cut(s)	36, 123, 494
AfiI	CCNNNNNNNGG	2 cut(s)	110, 668
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	8 cut(s)	26, 191, 226, 247, 280, 398, 499, 701
AjiI	CACGTC	1 cut(s)	828
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AluBI	AGCT	5 cut(s)	179, 243, 401, 506, 875
AluI	AGCT	5 cut(s)	179, 243, 401, 506, 875
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	167, 460, 526
AlwNI	CAGNNNCTG	2 cut(s)	71, 908
AoxI	GGCC	2 cut(s)	233, 778
ApeKI	GCWGC	2 cut(s)	94, 872
ApoI	RAATTY	3 cut(s)	130, 185, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	3 cut(s)	308, 310, 563
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	341, 589
AvaII	GGWCC	1 cut(s)	744
BbsI	GAAGAC	2 cut(s)	468, 930
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	81, 884
BccI	CCATC	2 cut(s)	848, 923
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	962
BisI	GCNGC	3 cut(s)	95, 873, 922
BlsI	GCNGC	3 cut(s)	96, 874, 923
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	744
BmgBI	CACGTC	1 cut(s)	828
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	337, 602
BpiI	GAAGAC	2 cut(s)	468, 930
BpmI	CTGGAG	2 cut(s)	214, 389
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	455
BsaBI	GATNNNNATC	3 cut(s)	351, 413, 584
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 668
Bse1I	ACTGG	2 cut(s)	708, 902
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	3 cut(s)	351, 413, 584
BseBI	CCWGG	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	87, 859
BseJI	GATNNNNATC	3 cut(s)	351, 413, 584
BseLI	CCNNNNNNNGG	2 cut(s)	110, 668
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	78, 516
BseNI	ACTGG	2 cut(s)	708, 902
BsePI	GCGCGC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	81, 884
Bsh1236I	CGCG	2 cut(s)	308, 561
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	235, 780
BshVI	ATCGAT	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	110, 668
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	112, 612
BsnI	GGCC	2 cut(s)	235, 780
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	121
Bsp143I	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
BspACI	CCGC	3 cut(s)	92, 559, 921
BspANI	GGCC	2 cut(s)	235, 780
BspCNI	CTCAG	2 cut(s)	77, 515
BspDI	ATCGAT	1 cut(s)	455
BspFNI	CGCG	2 cut(s)	308, 561
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	3 cut(s)	167, 460, 526
BsrDI	GCAATG	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	708, 902
BssECI	CCNNGG	1 cut(s)	325
BssHII	GCGCGC	1 cut(s)	306
BssMI	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	8, 425, 910
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	308, 481, 612
BstDEI	CTNAG	6 cut(s)	64, 98, 374, 502, 791, 956
BstF5I	GGATG	2 cut(s)	87, 859
BstFNI	CGCG	2 cut(s)	308, 561
BstHHI	GCGC	3 cut(s)	308, 310, 563
BstKTI	GATC	8 cut(s)	175, 273, 355, 455, 459, 534, 838, 1064
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 524
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	308, 561
BstV1I	GCAGC	2 cut(s)	81, 884
BstV2I	GAAGAC	2 cut(s)	468, 930
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	235, 780
BsuTUI	ATCGAT	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	828
BtsCI	GGATG	2 cut(s)	87, 859
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	3 cut(s)	308, 481, 612
CaiI	CAGNNNCTG	2 cut(s)	71, 908
CfoI	GCGC	3 cut(s)	308, 310, 563
Cfr13I	GGNCC	1 cut(s)	744
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	35, 122, 493
CviAII	CATG	2 cut(s)	542, 618
CviQI	GTAC	3 cut(s)	35, 122, 493
DdeI	CTNAG	6 cut(s)	64, 98, 374, 502, 791, 956
DpnI	GATC	8 cut(s)	174, 272, 354, 454, 458, 533, 837, 1063
DpnII	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
DraI	TTTAAA	2 cut(s)	84, 472
DrdI	GACNNNNNNGTC	1 cut(s)	829
DseDI	GACNNNNNNGTC	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	2 cut(s)	235, 780
Eco47I	GGWCC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	795, 860
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	545, 621
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	541, 617
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	95, 873, 922
FokI	GGATG	2 cut(s)	74, 866
Fsp4HI	GCNGC	3 cut(s)	95, 873, 922
GlaI	GCGC	3 cut(s)	307, 309, 562
GluI	GCNGC	3 cut(s)	95, 873, 922
GsuI	CTGGAG	2 cut(s)	214, 389
HaeIII	GGCC	2 cut(s)	235, 780
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	308, 310, 563
Hin1II	CATG	2 cut(s)	545, 621
Hin6I	GCGC	3 cut(s)	306, 308, 561
HinP1I	GCGC	3 cut(s)	306, 308, 561
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	341, 589
Hpy166II	GTNNAC	2 cut(s)	822, 890
Hpy188I	TCNGA	5 cut(s)	105, 748, 835, 840, 1033
Hpy188III	TCNNGA	3 cut(s)	406, 701, 942
Hpy8I	GTNNAC	2 cut(s)	822, 890
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	1 cut(s)	770
HpyCH4III	ACNGT	3 cut(s)	8, 425, 910
HpyCH4IV	ACGT	1 cut(s)	827
HpyCH4V	TGCA	8 cut(s)	140, 167, 479, 527, 593, 813, 971, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 524
HpyF3I	CTNAG	6 cut(s)	64, 98, 374, 502, 791, 956
HpySE526I	ACGT	1 cut(s)	827
Hsp92II	CATG	2 cut(s)	545, 621
HspAI	GCGC	3 cut(s)	306, 308, 561
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	81, 884
LweI	GCATC	2 cut(s)	337, 602
MaeII	ACGT	1 cut(s)	827
MaeIII	GTNAC	3 cut(s)	425, 685, 904
MalI	GATC	8 cut(s)	174, 272, 354, 454, 458, 533, 837, 1063
MboI	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
MboII	GAAGA	5 cut(s)	344, 347, 473, 853, 930
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	7 cut(s)	39, 130, 185, 274, 681, 750, 800
MnlI	CCTC	3 cut(s)	284, 545, 791
MseI	TTAA	3 cut(s)	83, 471, 1011
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	2 cut(s)	112, 612
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	2 cut(s)	308, 561
MwoI	GCNNNNNNNGC	2 cut(s)	347, 524
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
NlaIII	CATG	2 cut(s)	545, 621
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	545
PaqCI	CACCTGC	1 cut(s)	962
PauI	GCGCGC	1 cut(s)	306
PceI	AGGCCT	2 cut(s)	235, 780
PciI	ACATGT	1 cut(s)	541
PctI	GAATGC	2 cut(s)	112, 612
PflFI	GACNNNGTC	1 cut(s)	826
PkrI	GCNGC	3 cut(s)	96, 874, 923
Ple19I	CGATCG	1 cut(s)	459
PscI	ACATGT	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	744
PstNI	CAGNNNCTG	2 cut(s)	71, 908
PsuI	RGATCY	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	826
PteI	GCGCGC	1 cut(s)	306
PvuI	CGATCG	1 cut(s)	459
RsaI	GTAC	3 cut(s)	36, 123, 494
RsaNI	GTAC	3 cut(s)	35, 122, 493
SaqAI	TTAA	3 cut(s)	83, 471, 1011
SatI	GCNGC	3 cut(s)	95, 873, 922
Sau3AI	GATC	8 cut(s)	172, 270, 352, 452, 456, 531, 835, 1061
Sau96I	GGNCC	1 cut(s)	744
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	337, 602
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	507
SmoI	CTYRAG	1 cut(s)	507
Sse9I	AATT	7 cut(s)	39, 130, 185, 274, 681, 750, 800
SseBI	AGGCCT	2 cut(s)	235, 780
SsiI	CCGC	3 cut(s)	92, 559, 921
SspI	AATATT	2 cut(s)	315, 966
StuI	AGGCCT	2 cut(s)	235, 780
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	8, 425, 910
TaiI	ACGT	1 cut(s)	830
TaqI	TCGA	3 cut(s)	417, 455, 459
TasI	AATT	7 cut(s)	39, 130, 185, 274, 681, 750, 800
TatI	WGTACW	2 cut(s)	34, 121
TauI	GCSGC	1 cut(s)	924
Tru1I	TTAA	3 cut(s)	83, 471, 1011
Tru9I	TTAA	3 cut(s)	83, 471, 1011
TscAI	CASTG	1 cut(s)	715
TseI	GCWGC	2 cut(s)	94, 872
TspDTI	ATGAA	3 cut(s)	17, 606, 1029
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	715
Tth111I	GACNNNGTC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	3 cut(s)	130, 185, 800
XceI	RCATGY	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.