RLG00000035078

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
60452732 .. 60455759
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035078

Sequence Viewer

Length: 1521 bp
ATGGAAATGAAGCAACTCACATTCTCATTCCAATCATCCCTTCTACTAATATCTCTTATATTTGTCACAACCTCAGTATCCATAAAAATTCCAAGGCTGAGTCCAACTGGAGGGCAATTTATACATGGTAACGATTGGACACAAAGCCGACCCAGCGAAGCTTCATCACCTGCATTTGATCCCAAAGATTTTCAGACATTTTATTACAACCAAACACTTGACCATTTCAACTTTAGGTATGATAGCTTCAACACTTTTCAACAAAGATATTTGATCAATTCCAAGCATTGGGGTGGCTCCAATATCAGTGCACCAATACTCGCTTACTTAGGTGCAGAAGAATCAATTGATGTTGATATACCTATTATTGGGTTCCTACCTGATAACGCCATTCACTTTCAAGCCCTCCAGATATATATAGAGCACCGGTACTATGGGAAATCAATCCCATTCGGATCCAGGGAAGTGGCATTTAAAAATGCAAGCACTCTTGGATACTTCAACTCAGCCCAAGCTATAGCAGATTATGCAGAAATTCTCATACATGTAAAGAAGCAACTACATGCTGAACATTCTCCGGTCATTGTTATTGGTGGCTCATATGGTGGAATGCTTGCTTCATGGTTTCGCCTAAAGTATCCCCACGTCGTTCTTGGAGCTCTGGCCTCATCAGCTCCAATTCTATACTTTGATGACATAGTTCCTCCAGAGACGGGGTACTACTCCATTGCCACCAAGGATTTTCGAGAAGTGAGTGAGACTTGCTACCAAATCATAAAGAAGTCTTGGTCTGAAATTGATAATATTGCTTCTAAGCCTGAAGGCCTCTCAAGTCTTAGCAAGAAATTCCGAACTTGCAGACCGTTGACCAATTCGTCTGAGCTCAAGGACTACTTGGACTCGATGTATAGTAGGGCAGCTCAATACGATCATCCACCGAATTATCCGGTTACTGTAGTCTGCGGTGGCATTGATGGAGAGATGACATATGATATTTTGACAAAAATATTTGCAGGTGTGGTTGCATATACCGGAAACCGGTCATGCTATATCAACCCGCCCAAAAACTTAACAGAAACAGACGAAGGGTGGGGATGGCAGACATGTAGCGACTTGGTGATTCCCATAAGCGTGAACAACGACACCATGTTTCCACCGTACAAATTTGATGTCGATGAATATATCAATAAATGCAGGAAAACCTATGGCATCCCTCCCAGGCCTAATTGGGTGACTACCTACTTTGGAGGCCATGACATAAAACTGAGTCTCTCCAGATTTGCTAGCAACATCATTTTCTCCAATGGGCTAAGAGACCCTTACAGTATTGGCGGCATTTTAGAAGACATATCAGACAGTGTGGTAGCTGTCCATGCAAAGAATGGGTCTCACTGCTTGGATATTCTCACCTCAAATCAGACTACTGATCCAGACTGGCTGGTCAATCAGCGGAAAAGTGAGGTCAGAATCATCAAAGGATGGATAACCAAATACTATGCTGACCTTCAAGCTCTCCAATAA

Protein Analysis

507

Amino Acids

57.03

Weight (kDa)

6.01

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 71 - 485 3.2e-69 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 178, 1004
AasI GACNNNNNNGTC 2 cut(s) 874, 1439
Acc36I ACCTGC 2 cut(s) 178, 1004
AccB7I CCANNNNNTGG 1 cut(s) 288
AciI CCGC 4 cut(s) 963, 1058, 1332, 1450
AclWI GGATC 4 cut(s) 173, 450, 463, 1421
AcsI RAATTY 4 cut(s) 87, 534, 845, 1163
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 3 cut(s) 431, 719, 1160
AfiI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1038
AflIII ACRYGT 2 cut(s) 544, 1103
AgeI ACCGGT 2 cut(s) 426, 1038
AgsI TTSAA 6 cut(s) 229, 250, 260, 401, 502, 1508
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 2 cut(s) 458, 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 9 cut(s) 161, 246, 515, 659, 674, 883, 920, 1367, 1511
AluI AGCT 9 cut(s) 161, 246, 515, 659, 674, 883, 920, 1367, 1511
Alw21I GWGCWC 4 cut(s) 313, 426, 661, 885
Alw26I GTCTC 5 cut(s) 704, 752, 1274, 1308, 1392
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 4 cut(s) 173, 450, 463, 1421
AoxI GGCC 4 cut(s) 663, 823, 1220, 1249
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 4 cut(s) 87, 534, 845, 1163
ArsI GACNNNNNNTTYG 4 cut(s) 1155, 1187, 1370, 1402
AsiGI ACCGGT 2 cut(s) 426, 1038
AsuHPI GGTGA 4 cut(s) 159, 1129, 1243, 1399
AsuNHI GCTAGC 1 cut(s) 1283
BaeGI GKGCMC 1 cut(s) 313
BaeI ACNNNNGTAYC 2 cut(s) 60, 93
BamHI GGATCC 1 cut(s) 455
BanII GRGCYC 2 cut(s) 661, 885
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 1350
Bbv12I GWGCWC 4 cut(s) 313, 426, 661, 885
BbvI GCAGC 1 cut(s) 929
BccI CCATC 3 cut(s) 968, 1089, 1473
BciT130I CCWGG 2 cut(s) 460, 1219
BciVI GTATCC 3 cut(s) 88, 488, 648
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 5 cut(s) 704, 752, 1274, 1308, 1392
BfaI CTAG 1 cut(s) 1284
BfmI CTRYAG 2 cut(s) 516, 954
BfuAI ACCTGC 2 cut(s) 178, 1004
BfuI GTATCC 3 cut(s) 88, 488, 648
BisI GCNGC 2 cut(s) 918, 1333
BlsI GCNGC 2 cut(s) 919, 1334
Bme1390I CCNGG 2 cut(s) 460, 1219
BmgBI CACGTC 1 cut(s) 646
BmiI GGNNCC 3 cut(s) 298, 374, 457
BmrFI CCNGG 2 cut(s) 460, 1219
BmsI GCATC 1 cut(s) 1218
BmtI GCTAGC 1 cut(s) 1287
BpiI GAAGAC 1 cut(s) 1350
BpmI CTGGAG 4 cut(s) 129, 392, 690, 1258
BpuEI CTTGAG 2 cut(s) 814, 869
BsaI GGTCTC 2 cut(s) 1308, 1392
BsaJI CCNNGG 4 cut(s) 92, 459, 735, 1217
BsaWI WCCGGW 5 cut(s) 426, 577, 946, 1031, 1038
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1038
Bse118I RCCGGY 2 cut(s) 426, 1038
Bse1I ACTGG 2 cut(s) 112, 1439
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 2 cut(s) 460, 1219
BseDI CCNNGG 4 cut(s) 92, 459, 735, 1217
BseGI GGATG 5 cut(s) 35, 931, 1100, 1209, 1484
BseLI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1038
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 5 cut(s) 87, 89, 519, 870, 1256
BseNI ACTGG 2 cut(s) 112, 1439
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 929
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 4 cut(s) 665, 825, 1222, 1251
BshTI ACCGGT 2 cut(s) 426, 1038
BsiHKAI GWGCWC 4 cut(s) 313, 426, 661, 885
BsiSI CCGG 5 cut(s) 427, 578, 947, 1032, 1039
BslI CCNNNNNNNGG 5 cut(s) 110, 288, 368, 713, 1038
BsmAI GTCTC 5 cut(s) 704, 752, 1274, 1308, 1392
BsmBI CGTCTC 1 cut(s) 704
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 4 cut(s) 665, 825, 1222, 1251
Bso31I GGTCTC 2 cut(s) 1308, 1392
Bsp1286I GDGCHC 4 cut(s) 313, 426, 661, 885
Bsp143I GATC 5 cut(s) 178, 273, 455, 928, 1426
BspACI CCGC 4 cut(s) 963, 1058, 1332, 1450
BspANI GGCC 4 cut(s) 665, 825, 1222, 1251
BspCNI CTCAG 5 cut(s) 86, 90, 518, 871, 1257
BspLI GGNNCC 3 cut(s) 298, 374, 457
BspMI ACCTGC 2 cut(s) 178, 1004
BspOI GCTAGC 1 cut(s) 1287
BspPI GGATC 4 cut(s) 173, 450, 463, 1421
BspTNI GGTCTC 2 cut(s) 1308, 1392
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 2 cut(s) 426, 1038
BsrI ACTGG 2 cut(s) 112, 1439
BssAI RCCGGY 2 cut(s) 426, 1038
BssECI CCNNGG 4 cut(s) 92, 459, 735, 1217
BssMI GATC 5 cut(s) 178, 273, 455, 928, 1426
BssT1I CCWWGG 2 cut(s) 92, 735
Bst2UI CCWGG 2 cut(s) 460, 1219
Bst4CI ACNGT 5 cut(s) 864, 955, 1158, 1325, 1358
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 484, 615, 1285
BstDEI CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1265, 1310
BstF5I GGATG 5 cut(s) 35, 931, 1100, 1209, 1484
BstKTI GATC 5 cut(s) 181, 276, 458, 931, 1429
BstMAI GTCTC 5 cut(s) 704, 752, 1274, 1308, 1392
BstMBI GATC 5 cut(s) 178, 273, 455, 928, 1426
BstMWI GCNNNNNNNGC 4 cut(s) 153, 527, 671, 1373
BstNI CCWGG 2 cut(s) 460, 1219
BstNSI RCATGY 3 cut(s) 548, 566, 1107
BstSCI CCNGG 2 cut(s) 458, 1217
BstSFI CTRYAG 2 cut(s) 516, 954
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 929
BstV2I GAAGAC 1 cut(s) 1350
BstX2I RGATCY 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 455
BsuI GTATCC 3 cut(s) 88, 488, 648
BsuRI GGCC 4 cut(s) 665, 825, 1222, 1251
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 5 cut(s) 35, 931, 1100, 1209, 1484
BtsI GCAGTG 1 cut(s) 1390
BtsIMutI CAGTG 3 cut(s) 313, 1363, 1390
BveI ACCTGC 2 cut(s) 178, 1004
Cac8I GCNNGC 3 cut(s) 484, 615, 1285
Cfr10I RCCGGY 2 cut(s) 426, 1038
Csp6I GTAC 3 cut(s) 430, 718, 1159
CspAI ACCGGT 2 cut(s) 426, 1038
CviAII CATG 9 cut(s) 125, 545, 563, 621, 1044, 1104, 1147, 1253, 1373
CviQI GTAC 3 cut(s) 430, 718, 1159
DdeI CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1265, 1310
DpnI GATC 5 cut(s) 180, 275, 457, 930, 1428
DpnII GATC 5 cut(s) 178, 273, 455, 928, 1426
DraI TTTAAA 1 cut(s) 475
DrdI GACNNNNNNGTC 2 cut(s) 874, 1439
DseDI GACNNNNNNGTC 2 cut(s) 874, 1439
Ecl136II GAGCTC 2 cut(s) 659, 883
Eco130I CCWWGG 2 cut(s) 92, 735
Eco147I AGGCCT 2 cut(s) 825, 1222
Eco24I GRGCYC 2 cut(s) 661, 885
Eco31I GGTCTC 2 cut(s) 1308, 1392
Eco53kI GAGCTC 2 cut(s) 659, 883
Eco57I CTGAAG 1 cut(s) 840
EcoICRI GAGCTC 2 cut(s) 659, 883
EcoRII CCWGG 2 cut(s) 458, 1217
EcoT14I CCWWGG 2 cut(s) 92, 735
EcoT38I GRGCYC 2 cut(s) 661, 885
ErhI CCWWGG 2 cut(s) 92, 735
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 9 cut(s) 128, 548, 566, 624, 1047, 1107, 1150, 1256, 1376
FalI AAGNNNNNCTT 4 cut(s) 878, 910, 1303, 1335
FatI CATG 9 cut(s) 124, 544, 562, 620, 1043, 1103, 1146, 1252, 1372
FauI CCCGC 1 cut(s) 1065
FauNDI CATATG 2 cut(s) 601, 988
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 918, 1333
FokI GGATG 5 cut(s) 22, 918, 1107, 1196, 1491
FriOI GRGCYC 2 cut(s) 661, 885
Fsp4HI GCNGC 2 cut(s) 918, 1333
FspBI CTAG 1 cut(s) 1284
GluI GCNGC 2 cut(s) 918, 1333
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 4 cut(s) 129, 392, 690, 1258
HaeIII GGCC 4 cut(s) 665, 825, 1222, 1251
HapII CCGG 5 cut(s) 427, 578, 947, 1032, 1039
Hin1II CATG 9 cut(s) 128, 548, 566, 624, 1047, 1107, 1150, 1256, 1376
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 6 cut(s) 100, 341, 899, 1120, 1267, 1467
HpaII CCGG 5 cut(s) 427, 578, 947, 1032, 1039
HphI GGTGA 4 cut(s) 159, 1129, 1243, 1399
Hpy166II GTNNAC 3 cut(s) 311, 867, 1135
Hpy188I TCNGA 8 cut(s) 195, 455, 793, 851, 880, 1354, 1419, 1466
Hpy188III TCNNGA 5 cut(s) 409, 707, 746, 1275, 1430
Hpy8I GTNNAC 3 cut(s) 311, 867, 1135
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 4 cut(s) 50, 815, 1079, 1514
HpyCH4III ACNGT 5 cut(s) 864, 955, 1158, 1325, 1358
HpyCH4IV ACGT 1 cut(s) 645
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 527, 671, 1373
HpyF3I CTNAG 9 cut(s) 73, 98, 328, 505, 813, 836, 879, 1265, 1310
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 9 cut(s) 128, 548, 566, 624, 1047, 1107, 1150, 1256, 1376
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 178, 273, 455, 928, 1426
LmnI GCTCC 3 cut(s) 302, 656, 679
Lsp1109I GCAGC 1 cut(s) 929
LweI GCATC 1 cut(s) 1218
MaeI CTAG 1 cut(s) 1284
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 4 cut(s) 64, 128, 949, 1231
MalI GATC 5 cut(s) 180, 275, 457, 930, 1428
MboI GATC 5 cut(s) 178, 273, 455, 928, 1426
MboII GAAGA 2 cut(s) 350, 1355
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 4 cut(s) 313, 426, 661, 885
MlyI GAGTC 3 cut(s) 109, 893, 1276
MmeI TCCRAC 1 cut(s) 128
MseI TTAA 2 cut(s) 474, 1070
MslI CAYNNNNRTG 2 cut(s) 291, 1130
MspA1I CMGCKG 1 cut(s) 1450
MspI CCGG 5 cut(s) 427, 578, 947, 1032, 1039
MspR9I CCNGG 2 cut(s) 460, 1219
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 2 cut(s) 460, 1219
MwoI GCNNNNNNNGC 4 cut(s) 153, 527, 671, 1373
NdeI CATATG 2 cut(s) 601, 988
NdeII GATC 5 cut(s) 178, 273, 455, 928, 1426
NheI GCTAGC 1 cut(s) 1283
NlaIII CATG 9 cut(s) 128, 548, 566, 624, 1047, 1107, 1150, 1256, 1376
NlaIV GGNNCC 3 cut(s) 298, 374, 457
NmuCI GTSAC 2 cut(s) 64, 1231
NspI RCATGY 3 cut(s) 548, 566, 1107
PaqCI CACCTGC 2 cut(s) 178, 1004
PceI AGGCCT 2 cut(s) 825, 1222
PciI ACATGT 2 cut(s) 544, 1103
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 3 cut(s) 341, 1120, 1467
PflMI CCANNNNNTGG 1 cut(s) 288
PinAI ACCGGT 2 cut(s) 426, 1038
PkrI GCNGC 2 cut(s) 919, 1334
PleI GAGTC 3 cut(s) 108, 893, 1275
PpsI GAGTC 3 cut(s) 108, 893, 1275
PscI ACATGT 2 cut(s) 544, 1103
Psp124BI GAGCTC 2 cut(s) 661, 885
Psp6I CCWGG 2 cut(s) 458, 1217
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 458, 1217
PspN4I GGNNCC 3 cut(s) 298, 374, 457
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 3 cut(s) 431, 719, 1160
RsaNI GTAC 3 cut(s) 430, 718, 1159
RseI CAYNNNNRTG 2 cut(s) 291, 1130
SacI GAGCTC 2 cut(s) 661, 885
SaqAI TTAA 2 cut(s) 474, 1070
SatI GCNGC 2 cut(s) 918, 1333
Sau3AI GATC 5 cut(s) 178, 273, 455, 928, 1426
SchI GAGTC 3 cut(s) 109, 893, 1276
ScrFI CCNGG 2 cut(s) 460, 1219
SduI GDGCHC 4 cut(s) 313, 426, 661, 885
SfaNI GCATC 1 cut(s) 1218
SfcI CTRYAG 2 cut(s) 516, 954
SmiMI CAYNNNNRTG 2 cut(s) 291, 1130
SmlI CTYRAG 2 cut(s) 829, 884
SmoI CTYRAG 2 cut(s) 829, 884
SseBI AGGCCT 2 cut(s) 825, 1222
SsiI CCGC 4 cut(s) 963, 1058, 1332, 1450
SspI AATATT 2 cut(s) 805, 1008
SspMI CTAG 1 cut(s) 1284
SstI GAGCTC 2 cut(s) 661, 885
StuI AGGCCT 2 cut(s) 825, 1222
StyD4I CCNGG 2 cut(s) 458, 1217
StyI CCWWGG 2 cut(s) 92, 735
TaaI ACNGT 5 cut(s) 864, 955, 1158, 1325, 1358
TaiI ACGT 1 cut(s) 648
TaqI TCGA 3 cut(s) 745, 902, 1173
TauI GCSGC 1 cut(s) 1335
TfiI GAWTC 3 cut(s) 341, 1120, 1467
Tru1I TTAA 2 cut(s) 474, 1070
Tru9I TTAA 2 cut(s) 474, 1070
TscAI CASTG 3 cut(s) 313, 1363, 1397
TseFI GTSAC 2 cut(s) 64, 1231
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 2 cut(s) 64, 1231
TspDTI ATGAA 4 cut(s) 23, 153, 609, 1191
TspRI CASTG 3 cut(s) 313, 1363, 1397
Van91I CCANNNNNTGG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 4 cut(s) 87, 534, 845, 1163
XceI RCATGY 3 cut(s) 548, 566, 1107
XcmI CCANNNNNNNNNTGG 2 cut(s) 650, 1379
XspI CTAG 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.