Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020386.1

Orthogroup ID

OG0000745

Physical Location & Seq

Genomic Coordinates Forward (+)

452 .. 1777

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020386.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgaagcaacttacattctcactccaatcatcccttctactaatatctcttatatttgtcacaacctcagtttccttaaaaattccaaggctgagtccgactggagggcaatttatacatggtaactattggacacaaggccgacccagcgaagcttcatcatctgcatttgatcccaaagatcttcagacattttactacaaccaaacacttggccatttcaactttaggtatgatagcttcaatacttttcaacaaagatatttgatcaattccaagcattggggtggctccaatatcagtacacctatactcgcttacttaggcgcagaagagtcaattgatgttgatatacctattattgggttcctacgtgaaaacgccattcactttcaagccctccagatatatatagagcaccggtactatggggaatcaatcccattcggctcaacggaagtggcatttaaaaatgcaagcactcttggatacttcaactcagcccaagctatagcagattatgcagaaattctcatacatgtaaagaagcagctacatgctgaacattctccggtcattgttatcggtggctcatatggtggaatgcttgcttcatggtttcgtctaaagtatccccacgtcgctcttggagctctggcctcatcagctccaattctatactttgacgacatagttccgccagaaacaggatactactccattgtcaccaaggattttcgagaagctagtgagactggctaccgccaaatcataaagaagtcttggtctgatattgatattattgcttctaagcctgaaggcctctcaagtcttagcaagaaattccgaacttgcaggcacatccccttaagtttcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

293

Amino Acids

32.95

Weight (kDa)

7.83

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860 AT5G22860
fragaria_vesca	FvH4_3g30250 FvH4_3g30280 FvH4_3g30360 FvH4_3g30360
malus_domestica	MD03G1129900.v1.1 MD03G1130100.v1.1 MD11G1151900.v1.1 MD11G1152000.v1.1
prunus_persica	Prupe.6G031200_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115100_v2.0.a1 Prupe.6G115200_v2.0.a1
pyrus_communis	pycom11g12400 pycom11g12420
rosa_chinensis	RchiOBHm_Chr1g0342691 RchiOBHm_Chr1g0342711 RchiOBHm_Chr5g0056161 RchiOBHm_Chr5g0056231 RchiOBHm_Chr5g0056271 RchiOBHm_Chr5g0056301
rosa_laevigata	RLG00000029169 RLG00000029170 RLG00000029188 RLG00000035054 RLG00000035056 RLG00000035068 RLG00000035071 RLG00000035078 RLG00000035081
rosa_multiflora	Rmu_sc0000173.1_g000042 Rmu_sc0000680.1_g000004 Rmu_sc0000680.1_g000008 Rmu_sc0000680.1_g000030 Rmu_sc0001787.1_g000023 Rmu_sc0003586.1_g000001 Rmu_sc0020386.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024030 Rroxscaffold_1G00024080 Rroxscaffold_1G00024190 Rroxscaffold_4G00313170 Rroxscaffold_4G00313200
rosa_rugosa	Rorug01G0146600.1 Rorug05G0297700 Rorug05G0298200 Rorug05G0298300
rosa_samantha	Rh1AG163500 Rh1AG164800 Rh1BG130700 Rh5BG379800 Rh5BG380300 Rh5CG403400 Rh5CG403800 Rh5DG392500 Rh5DG393300 Rh5DG393400
rosa_wichuraiana	Rw0G004400 Rw0G004410 Rw0G004460 Rw0G012640 Rw0G012650 Rw0G012700 Rw0G015550 Rw5G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	2 cut(s)	698, 763
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	81, 528, 842
AcuI	CTGAAG	2 cut(s)	170, 837
AfaI	GTAC	2 cut(s)	304, 425
AfiI	CCNNNNNNNGG	4 cut(s)	104, 282, 362, 707
AflII	CTTAAG	1 cut(s)	868
AflIII	ACRYGT	1 cut(s)	538
AgeI	ACCGGT	1 cut(s)	420
AgsI	TTSAA	5 cut(s)	223, 244, 254, 395, 496
AjiI	CACGTC	1 cut(s)	640
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	7 cut(s)	155, 240, 509, 553, 653, 668, 746
AluI	AGCT	7 cut(s)	155, 240, 509, 553, 653, 668, 746
Alw21I	GWGCWC	2 cut(s)	420, 655
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	4 cut(s)	139, 214, 657, 820
ApeKI	GCWGC	1 cut(s)	550
ApoI	RAATTY	3 cut(s)	81, 528, 842
AsiGI	ACCGGT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	655
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
Bbv12I	GWGCWC	2 cut(s)	420, 655
BbvI	GCAGC	1 cut(s)	562
BciVI	GTATCC	3 cut(s)	482, 642, 704
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	868
BfuI	GTATCC	3 cut(s)	482, 642, 704
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	551
BlsI	GCNGC	1 cut(s)	552
BmgBI	CACGTC	1 cut(s)	640
BmiI	GGNNCC	2 cut(s)	292, 368
BpmI	CTGGAG	2 cut(s)	123, 386
BpuEI	CTTGAG	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	86, 729
BsaWI	WCCGGW	2 cut(s)	420, 571
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 282, 362, 707
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	2 cut(s)	106, 760
BseDI	CCNNGG	2 cut(s)	86, 729
BseGI	GGATG	2 cut(s)	29, 861
BseLI	CCNNNNNNNGG	4 cut(s)	104, 282, 362, 707
BseMII	CTCAG	3 cut(s)	81, 83, 513
BseNI	ACTGG	2 cut(s)	106, 760
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	4 cut(s)	141, 216, 659, 822
BshTI	ACCGGT	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	420, 655
BsiSI	CCGG	2 cut(s)	421, 572
BslI	CCNNNNNNNGG	4 cut(s)	104, 282, 362, 707
BsmAI	GTCTC	1 cut(s)	746
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	4 cut(s)	141, 216, 659, 822
Bsp1286I	GDGCHC	2 cut(s)	420, 655
Bsp143I	GATC	3 cut(s)	172, 181, 267
BspACI	CCGC	2 cut(s)	698, 763
BspANI	GGCC	4 cut(s)	141, 216, 659, 822
BspCNI	CTCAG	3 cut(s)	80, 84, 512
BspLI	GGNNCC	2 cut(s)	292, 368
BspPI	GGATC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	868
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	106, 760
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	86, 729
BssMI	GATC	3 cut(s)	172, 181, 267
BssT1I	CCWWGG	2 cut(s)	86, 729
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	868
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	478, 609, 857
BstDEI	CTNAG	6 cut(s)	67, 92, 322, 499, 810, 833
BstF5I	GGATG	2 cut(s)	29, 861
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	3 cut(s)	175, 184, 270
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	3 cut(s)	172, 181, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 521, 650, 665
BstNSI	RCATGY	2 cut(s)	542, 560
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	3 cut(s)	482, 642, 704
BsuRI	GGCC	4 cut(s)	141, 216, 659, 822
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	29, 861
Cac8I	GCNNGC	3 cut(s)	478, 609, 857
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	303, 424
CspAI	ACCGGT	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	4 cut(s)	119, 539, 557, 615
CviQI	GTAC	2 cut(s)	303, 424
DdeI	CTNAG	6 cut(s)	67, 92, 322, 499, 810, 833
DpnI	GATC	3 cut(s)	174, 183, 269
DpnII	GATC	3 cut(s)	172, 181, 267
DraI	TTTAAA	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	687
Ecl136II	GAGCTC	1 cut(s)	653
Eco130I	CCWWGG	2 cut(s)	86, 729
Eco147I	AGGCCT	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	653
Eco57I	CTGAAG	2 cut(s)	170, 837
EcoICRI	GAGCTC	1 cut(s)	653
EcoT14I	CCWWGG	2 cut(s)	86, 729
EcoT38I	GRGCYC	1 cut(s)	655
ErhI	CCWWGG	2 cut(s)	86, 729
FaeI	CATG	4 cut(s)	122, 542, 560, 618
FatI	CATG	4 cut(s)	118, 538, 556, 614
FauNDI	CATATG	2 cut(s)	595, 878
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	551
FokI	GGATG	2 cut(s)	16, 848
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	1 cut(s)	551
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	551
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	2 cut(s)	123, 386
HaeIII	GGCC	4 cut(s)	141, 216, 659, 822
HapII	CCGG	2 cut(s)	421, 572
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	122, 542, 560, 618
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	3 cut(s)	94, 335, 434
HpaII	CCGG	2 cut(s)	421, 572
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	4 cut(s)	99, 189, 790, 848
Hpy188III	TCNNGA	2 cut(s)	403, 740
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	44, 812
HpyCH4IV	ACGT	2 cut(s)	373, 639
HpyCH4V	TGCA	4 cut(s)	167, 476, 524, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 521, 650, 665
HpyF3I	CTNAG	6 cut(s)	67, 92, 322, 499, 810, 833
HpySE526I	ACGT	2 cut(s)	373, 639
Hsp92II	CATG	4 cut(s)	122, 542, 560, 618
HspAI	GCGC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	172, 181, 267
LmnI	GCTCC	3 cut(s)	296, 650, 673
Lsp1109I	GCAGC	1 cut(s)	562
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	373, 639
MaeIII	GTNAC	3 cut(s)	58, 122, 724
MalI	GATC	3 cut(s)	174, 183, 269
MboI	GATC	3 cut(s)	172, 181, 267
MboII	GAAGA	2 cut(s)	176, 344
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	420, 655
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	7 cut(s)	81, 110, 271, 339, 528, 672, 842
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	103, 344
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	76, 98, 410, 670, 833
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	3 cut(s)	77, 468, 869
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	868
MspI	CCGG	2 cut(s)	421, 572
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	609
MwoI	GCNNNNNNNGC	4 cut(s)	147, 521, 650, 665
NdeI	CATATG	2 cut(s)	595, 878
NdeII	GATC	3 cut(s)	172, 181, 267
NlaIII	CATG	4 cut(s)	122, 542, 560, 618
NlaIV	GGNNCC	2 cut(s)	292, 368
NmuCI	GTSAC	2 cut(s)	58, 724
NspI	RCATGY	2 cut(s)	542, 560
PceI	AGGCCT	1 cut(s)	822
PciI	ACATGT	1 cut(s)	538
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	282
PinAI	ACCGGT	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	552
PleI	GAGTC	2 cut(s)	102, 343
PpsI	GAGTC	2 cut(s)	102, 343
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	1 cut(s)	538
Psp124BI	GAGCTC	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	292, 368
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	304, 425
RsaNI	GTAC	2 cut(s)	303, 424
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	3 cut(s)	77, 468, 869
SatI	GCNGC	1 cut(s)	551
Sau3AI	GATC	3 cut(s)	172, 181, 267
SchI	GAGTC	2 cut(s)	103, 344
SduI	GDGCHC	2 cut(s)	420, 655
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	826, 868
SmoI	CTYRAG	2 cut(s)	826, 868
Sse9I	AATT	7 cut(s)	81, 110, 271, 339, 528, 672, 842
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	2 cut(s)	698, 763
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	1 cut(s)	655
StuI	AGGCCT	1 cut(s)	822
StyI	CCWWGG	2 cut(s)	86, 729
TaiI	ACGT	2 cut(s)	376, 642
TaqI	TCGA	1 cut(s)	739
TasI	AATT	7 cut(s)	81, 110, 271, 339, 528, 672, 842
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	77, 468, 869
Tru9I	TTAA	3 cut(s)	77, 468, 869
TseFI	GTSAC	2 cut(s)	58, 724
TseI	GCWGC	1 cut(s)	550
Tsp45I	GTSAC	2 cut(s)	58, 724
TspDTI	ATGAA	4 cut(s)	17, 147, 603, 865
TspGWI	ACGGA	1 cut(s)	470
Van91I	CCANNNNNTGG	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	868
XapI	RAATTY	3 cut(s)	81, 528, 842
XceI	RCATGY	2 cut(s)	542, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.