AT5G26040

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001640
Physical Location & Seq
Reverse (-)
9099152 .. 9101682
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26040.1

Sequence Viewer

Length: 1080 bp
ATGACACATACCCGAGTCATCTCGACCTGGACCGAGTTAACTCGCGACTTAGCTATTTACTTGCTCTTCACGTTTTTCGCAATCAAAGTCTTCAAATTTCTCTTCTCCTGTAATCGAACCTCTGAAATATCATCGTTTTCGATGGCGACTCATCCCGAAGCTCTCCGACGAGAGCGAATTCTCAACAGTAAACTCTACTTCGACGTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGTCTTATGATATCTCGTTCATGGGTATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTTTCAGATGGGTTTCTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGATCTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGCAGTGCCACTGTCGCTAGGATCACCGAGGTTGCACCAGTTGCGTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTTCTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAACAGAACGTGGATGGGCGATAAACATTGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGATCTCGGCGATGACAACCGTGTTTACATTTTGGATATGTACAATCCCGAGATATACCCTTTCGATTATAGAGCTAGGAGATTTATCGATCAGAAAGTTGAGGTCATGAGCGGGACGACCACCGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACCGGAGTTGGTAATTTACAATGCTGGCACAGACATATTAGATGGTGACCCTCTGGGACTTCTAAAGATAAGCCCCGATGGCATAACAAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGAGAAAAATATTCCTCTTGTGATGCTAACCTCAGGCGGGTACATGAAGTCAAGCGCTAGAGTTATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

359

Amino Acids

40.65

Weight (kDa)

6.11

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 93 - 206 8.4e-11 Histone deacetylase domain
Hist_deacetyl PF00850 208 - 342 4.2e-25 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 514
AccBSI CCGCTC 1 cut(s) 768
AccII CGCG 2 cut(s) 45, 826
AciI CCGC 3 cut(s) 768, 993, 1025
AclWI GGATC 2 cut(s) 455, 1054
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 3 cut(s) 95, 177, 481
AcuI CTGAAG 1 cut(s) 928
AfaI GTAC 4 cut(s) 396, 607, 698, 998
AfeI AGCGCT 1 cut(s) 1012
AfiI CCNNNNNNNGG 2 cut(s) 523, 993
AgsI TTSAA 5 cut(s) 94, 216, 368, 375, 424
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 6 cut(s) 53, 161, 371, 420, 548, 731
AluI AGCT 6 cut(s) 53, 161, 371, 420, 548, 731
Alw26I GTCTC 1 cut(s) 924
AlwI GGATC 2 cut(s) 455, 1054
Ama87I CYCGRG 2 cut(s) 12, 704
Aor51HI AGCGCT 1 cut(s) 1012
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 2 cut(s) 493, 545
ApoI RAATTY 3 cut(s) 95, 177, 481
Asp700I GAANNNNTTC 1 cut(s) 941
AspLEI GCGC 1 cut(s) 1013
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 442, 893
AvaI CYCGRG 2 cut(s) 12, 704
AvaII GGWCC 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 988
BalI TGGCCA 1 cut(s) 648
BbsI GAAGAC 2 cut(s) 82, 934
BbvI GCAGC 2 cut(s) 505, 557
BccI CCATC 5 cut(s) 136, 323, 564, 872, 908
BceAI ACGGC 1 cut(s) 1064
BciT130I CCWGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 924
BfaI CTAG 4 cut(s) 444, 732, 800, 1014
BfoI RGCGCY 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 915
BglII AGATCT 2 cut(s) 622, 658
BisI GCNGC 2 cut(s) 494, 546
BlsI GCNGC 2 cut(s) 495, 547
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 2 cut(s) 12, 704
BmgT120I GGNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 2 cut(s) 619, 969
BpiI GAAGAC 2 cut(s) 82, 934
BplI GAGNNNNNCTC 2 cut(s) 1028, 1060
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 833
Bsa29I ATCGAT 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 2 cut(s) 838, 1072
Bsc4I CCNNNNNNNGG 2 cut(s) 523, 993
Bse1I ACTGG 1 cut(s) 464
Bse21I CCTNAGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 151, 575
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 523, 993
BseMII CTCAG 2 cut(s) 393, 1002
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 3 cut(s) 356, 603, 633
BseXI GCAGC 2 cut(s) 505, 557
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 2 cut(s) 45, 826
Bsh1285I CGRYCG 1 cut(s) 1073
BshFI GGCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 744
BsiEI CGRYCG 1 cut(s) 1073
BsiHKCI CYCGRG 2 cut(s) 12, 704
BsiSI CCGG 2 cut(s) 839, 1073
BslFI GGGAC 3 cut(s) 547, 784, 906
BslI CCNNNNNNNGG 2 cut(s) 523, 993
BsmAI GTCTC 1 cut(s) 924
BsmBI CGTCTC 1 cut(s) 924
BsmFI GGGAC 3 cut(s) 547, 784, 906
BsnI GGCC 1 cut(s) 648
BsoBI CYCGRG 2 cut(s) 12, 704
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
Bsp68I TCGCGA 2 cut(s) 45, 826
BspACI CCGC 3 cut(s) 768, 993, 1025
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 2 cut(s) 394, 1001
BspDI ATCGAT 1 cut(s) 744
BspFNI CGCG 2 cut(s) 45, 826
BspHI TCATGA 1 cut(s) 762
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 2 cut(s) 455, 1054
BspQI GCTCTTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 3 cut(s) 188, 439, 677
Bst6I CTCTTC 2 cut(s) 71, 107
BstAPI GCANNNNNTGC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 3 cut(s) 49, 402, 988
BstEII GGTNACC 1 cut(s) 881
BstF5I GGATG 2 cut(s) 151, 575
BstFNI CGCG 2 cut(s) 45, 826
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 6 cut(s) 385, 450, 625, 661, 748, 1062
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
BstMCI CGRYCG 1 cut(s) 1073
BstMWI GCNNNNNNNGC 5 cut(s) 426, 440, 467, 554, 915
BstNI CCWGG 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 26
BstUI CGCG 2 cut(s) 45, 826
BstV1I GCAGC 2 cut(s) 505, 557
BstV2I GAAGAC 2 cut(s) 82, 934
BstX2I RGATCY 2 cut(s) 622, 658
BstYI RGATCY 2 cut(s) 622, 658
Bsu15I ATCGAT 1 cut(s) 744
Bsu36I CCTNAGG 1 cut(s) 988
BsuRI GGCC 1 cut(s) 648
BsuTUI ATCGAT 1 cut(s) 744
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 151, 575
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 435, 436
BtuMI TCGCGA 2 cut(s) 45, 826
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 862
CciI TCATGA 1 cut(s) 762
CfoI GCGC 1 cut(s) 1013
Cfr13I GGNCC 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 744
Csp6I GTAC 4 cut(s) 395, 606, 697, 997
CviAII CATG 4 cut(s) 259, 650, 763, 1000
CviQI GTAC 4 cut(s) 395, 606, 697, 997
DdeI CTNAG 3 cut(s) 49, 402, 988
DpnI GATC 6 cut(s) 384, 449, 624, 660, 747, 1061
DpnII GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
DrdI GACNNNNNNGTC 1 cut(s) 938
DseDI GACNNNNNNGTC 1 cut(s) 938
EaeI YGGCCR 1 cut(s) 646
Eam1104I CTCTTC 2 cut(s) 71, 107
EarI CTCTTC 2 cut(s) 71, 107
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 928
Eco81I CCTNAGG 1 cut(s) 988
Eco88I CYCGRG 2 cut(s) 12, 704
Eco91I GGTNACC 1 cut(s) 881
EcoO65I GGTNACC 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 26
EcoRV GATATC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 924
FaeI CATG 4 cut(s) 262, 653, 766, 1003
FaqI GGGAC 3 cut(s) 547, 784, 906
FatI CATG 4 cut(s) 258, 649, 762, 999
FauI CCCGC 2 cut(s) 761, 986
Fnu4HI GCNGC 2 cut(s) 494, 546
FokI GGATG 2 cut(s) 138, 582
Fsp4HI GCNGC 2 cut(s) 494, 546
FspBI CTAG 4 cut(s) 444, 732, 800, 1014
GlaI GCGC 1 cut(s) 1012
GluI GCNGC 2 cut(s) 494, 546
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 648
HapII CCGG 2 cut(s) 839, 1073
HhaI GCGC 1 cut(s) 1013
Hin1II CATG 4 cut(s) 262, 653, 766, 1003
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 6 cut(s) 15, 148, 287, 538, 1028, 1039
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 2 cut(s) 839, 1073
HphI GGTGA 2 cut(s) 442, 893
Hpy166II GTNNAC 3 cut(s) 39, 191, 682
Hpy188I TCNGA 8 cut(s) 124, 167, 328, 403, 480, 518, 750, 947
Hpy8I GTNNAC 3 cut(s) 39, 191, 682
Hpy99I CGWCG 2 cut(s) 171, 206
HpyCH4III ACNGT 3 cut(s) 188, 439, 677
HpyCH4IV ACGT 3 cut(s) 71, 204, 565
HpyCH4V TGCA 6 cut(s) 277, 312, 461, 493, 557, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 426, 440, 467, 554, 915
HpyF3I CTNAG 3 cut(s) 49, 402, 988
HpySE526I ACGT 3 cut(s) 71, 204, 565
Hsp92II CATG 4 cut(s) 262, 653, 766, 1003
HspAI GCGC 1 cut(s) 1011
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
LguI GCTCTTC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 505, 557
LweI GCATC 2 cut(s) 619, 969
MaeI CTAG 4 cut(s) 444, 732, 800, 1014
MaeII ACGT 3 cut(s) 71, 204, 565
MaeIII GTNAC 1 cut(s) 881
MalI GATC 6 cut(s) 384, 449, 624, 660, 747, 1061
MbiI CCGCTC 1 cut(s) 768
MboI GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
MboII GAAGA 5 cut(s) 58, 82, 94, 282, 934
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 2 cut(s) 622, 658
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 6 cut(s) 95, 177, 272, 351, 481, 849
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 24, 142
MmeI TCCRAC 2 cut(s) 190, 859
Mox20I TGGCCA 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 941
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 38, 413
Msp20I TGGCCA 1 cut(s) 648
MspI CCGG 2 cut(s) 839, 1073
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 28
MvnI CGCG 2 cut(s) 45, 826
MwoI GCNNNNNNNGC 5 cut(s) 426, 440, 467, 554, 915
NdeII GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
NlaIII CATG 4 cut(s) 262, 653, 766, 1003
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 881
NruI TCGCGA 2 cut(s) 45, 826
PagI TCATGA 1 cut(s) 762
PciSI GCTCTTC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 941
PfeI GAWTC 4 cut(s) 287, 538, 1028, 1039
PkrI GCNGC 2 cut(s) 495, 547
PleI GAGTC 2 cut(s) 23, 142
PpsI GAGTC 2 cut(s) 23, 142
Psp6I CCWGG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 881
PspGI CCWGG 1 cut(s) 26
PspPI GGNCC 1 cut(s) 30
PsuI RGATCY 2 cut(s) 622, 658
RruI TCGCGA 2 cut(s) 45, 826
RsaI GTAC 4 cut(s) 396, 607, 698, 998
RsaNI GTAC 4 cut(s) 395, 606, 697, 997
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 38, 413
SatI GCNGC 2 cut(s) 494, 546
Sau3AI GATC 6 cut(s) 382, 447, 622, 658, 745, 1059
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 2 cut(s) 24, 142
ScrFI CCNGG 1 cut(s) 28
SfaNI GCATC 2 cut(s) 619, 969
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 6 cut(s) 95, 177, 272, 351, 481, 849
SsiI CCGC 3 cut(s) 768, 993, 1025
SspI AATATT 1 cut(s) 967
SspMI CTAG 4 cut(s) 444, 732, 800, 1014
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 3 cut(s) 188, 439, 677
TaiI ACGT 3 cut(s) 74, 207, 568
TaqI TCGA 7 cut(s) 23, 115, 140, 201, 224, 720, 744
TaqII GACCGA 1 cut(s) 47
TasI AATT 6 cut(s) 95, 177, 272, 351, 481, 849
TatI WGTACW 2 cut(s) 605, 696
TfiI GAWTC 4 cut(s) 287, 538, 1028, 1039
Tru1I TTAA 2 cut(s) 38, 413
Tru9I TTAA 2 cut(s) 38, 413
TscAI CASTG 2 cut(s) 436, 442
TseFI GTSAC 1 cut(s) 881
TseI GCWGC 2 cut(s) 493, 545
Tsp45I GTSAC 1 cut(s) 881
TspDTI ATGAA 6 cut(s) 225, 247, 587, 666, 819, 1016
TspRI CASTG 2 cut(s) 436, 442
VpaK11BI GGWCC 1 cut(s) 30
XapI RAATTY 3 cut(s) 95, 177, 481
XmnI GAANNNNTTC 1 cut(s) 941
XspI CTAG 4 cut(s) 444, 732, 800, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.