Rmu_sc0003720.1_g000019

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003720.1
OG0001640
Physical Location & Seq
Reverse (-)
105369 .. 105786
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003720.1_g000019.1.cds

Sequence Viewer

Length: 333 bp
atgtcgtttgctgctctacctgaaaacgacgccaaatctcttaggcgcagccgtattctctccagcaagctctactttgaattcccgagctccaaggtaaaaccagtatctaaattcgtctatgctttcaagtttacatttcagaatctgagaatttcgccaagtttacatctcggcattgagaagctgcatccgttcgattgggctaaatggagtcggatatgtagattattgtccatggatgatgttgtggacaagaattgcattgtagagccaaaggaagctgcaaaggaagatcttgtggtatatattcatatgaattttgctttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

110

Amino Acids

12.8

Weight (kDa)

9.36

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 80, 113, 153, 319
AcyI GRCGYC 1 cut(s) 30
AgsI TTSAA 2 cut(s) 80, 130
AluBI AGCT 4 cut(s) 70, 90, 187, 284
AluI AGCT 4 cut(s) 70, 90, 187, 284
Alw21I GWGCWC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 85
ApeKI GCWGC 4 cut(s) 11, 48, 187, 284
ApoI RAATTY 4 cut(s) 80, 113, 153, 319
AspLEI GCGC 1 cut(s) 48
AvaI CYCGRG 1 cut(s) 85
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 60, 174, 271
BceAI ACGGC 1 cut(s) 36
BglII AGATCT 1 cut(s) 295
BisI GCNGC 4 cut(s) 12, 49, 188, 285
BlsI GCNGC 4 cut(s) 13, 50, 189, 286
BmeT110I CYCGRG 1 cut(s) 85
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 93, 237
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 93, 237
BseGI GGATG 2 cut(s) 190, 247
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 60, 174, 271
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 93, 237
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 93, 237
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 41, 149
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 190, 247
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 60, 174, 271
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 190, 247
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 1 cut(s) 48
CseI GACGC 1 cut(s) 38
CviAII CATG 1 cut(s) 238
CviJI RGCY 7 cut(s) 51, 70, 90, 187, 206, 274, 284
CviKI_1 RGCY 7 cut(s) 51, 70, 90, 187, 206, 274, 284
DdeI CTNAG 2 cut(s) 41, 149
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 93, 237
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 80
EcoT14I CCWWGG 2 cut(s) 93, 237
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 93, 237
FaeI CATG 1 cut(s) 241
FaiI YATR 7 cut(s) 123, 223, 239, 307, 309, 315, 317
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 237
FauNDI CATATG 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 12, 49, 188, 285
FokI GGATG 2 cut(s) 177, 254
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 12, 49, 188, 285
GlaI GCGC 1 cut(s) 47
GluI GCNGC 4 cut(s) 12, 49, 188, 285
GsuI CTGGAG 1 cut(s) 46
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 2 cut(s) 145, 214
Hpy166II GTNNAC 3 cut(s) 135, 167, 253
Hpy188I TCNGA 3 cut(s) 144, 150, 219
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 3 cut(s) 135, 167, 253
Hpy99I CGWCG 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 190, 264, 287
HpyF3I CTNAG 2 cut(s) 41, 149
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 3 cut(s) 33, 76, 117
Lsp1109I GCAGC 3 cut(s) 60, 174, 271
LweI GCATC 1 cut(s) 199
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 5 cut(s) 80, 113, 153, 259, 319
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 197
NcoI CCATGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 315
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 153
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 4 cut(s) 13, 50, 189, 286
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 295
SacI GAGCTC 1 cut(s) 92
SatI GCNGC 4 cut(s) 12, 49, 188, 285
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 92
SetI ASST 6 cut(s) 22, 72, 92, 99, 189, 286
SfaNI GCATC 1 cut(s) 199
Sse9I AATT 5 cut(s) 80, 113, 153, 259, 319
SstI GAGCTC 1 cut(s) 92
StyI CCWWGG 2 cut(s) 93, 237
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 80, 113, 153, 259, 319
TfiI GAWTC 1 cut(s) 145
TseI GCWGC 4 cut(s) 11, 48, 187, 284
TspDTI ATGAA 2 cut(s) 302, 332
TspGWI ACGGA 1 cut(s) 183
XapI RAATTY 4 cut(s) 80, 113, 153, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.