RLG00000021847

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001640
Physical Location & Seq
Forward (+)
78789382 .. 78791408
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021847

Sequence Viewer

Length: 723 bp
ATGGTCTCCGACCATCAGTTATTGTCACCGCTCAACCCATCTACCGTGGGAACCAATGATCTACAAACTATAGGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGGTATGAGAACATATTCATGCCATTCTGGAACGATGTCGTTTACTGCTCCACCTGGAAACGACGCTAAATCTCTCAGGTGCAGCCGTATTCTCTCCAGCAAGCTCCACTTTGACGTCCCGAGCTTCAAGGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTCGGAATATGAGAATTTCACCAAGTTTACATCTCGGCATTGAGAAGCTGCATCCGTTCGATTCGGCTAAATGGGGTCGGGTATATAGGTTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGGGAAAAGGTGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGGTGATGATTATTAATCTTTATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACACTATGTTTACCTTTTTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

241

Amino Acids

26.57

Weight (kDa)

7.65

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 191 - 240 6.8e-06 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 619
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 619
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 31
AciI CCGC 2 cut(s) 29, 634
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 2 cut(s) 251, 291
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 517, 569
AgsI TTSAA 2 cut(s) 232, 268
AjnI CCWGG 2 cut(s) 157, 510
AluBI AGCT 5 cut(s) 208, 228, 325, 422, 540
AluI AGCT 5 cut(s) 208, 228, 325, 422, 540
Alw26I GTCTC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 2 cut(s) 560, 673
ApeKI GCWGC 5 cut(s) 186, 325, 422, 478, 532
ApoI RAATTY 2 cut(s) 251, 291
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 3 cut(s) 18, 288, 649
AvaI CYCGRG 1 cut(s) 223
BalI TGGCCA 1 cut(s) 675
BanI GGYRCC 1 cut(s) 442
BbvI GCAGC 5 cut(s) 198, 312, 409, 490, 519
BccI CCATC 4 cut(s) 21, 46, 551, 571
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 159, 512
BcoDI GTCTC 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 433
BisI GCNGC 5 cut(s) 187, 326, 423, 479, 533
BlsI GCNGC 5 cut(s) 188, 327, 424, 480, 534
Bme1390I CCNGG 2 cut(s) 159, 512
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 2 cut(s) 52, 444
BmrFI CCNGG 2 cut(s) 159, 512
BmsI GCATC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 45, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 569
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 2 cut(s) 159, 512
BseDI CCNNGG 2 cut(s) 45, 375
BseGI GGATG 3 cut(s) 328, 385, 562
BseLI CCNNNNNNNGG 2 cut(s) 517, 569
BseMII CTCAG 2 cut(s) 193, 505
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 5 cut(s) 198, 312, 409, 490, 519
BsgI GTGCAG 3 cut(s) 205, 497, 647
BshFI GGCC 2 cut(s) 562, 675
BshNI GGYRCC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 517, 569
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 562, 675
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 2 cut(s) 58, 433
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 2 cut(s) 29, 634
BspANI GGCC 2 cut(s) 562, 675
BspCNI CTCAG 2 cut(s) 192, 504
BspLI GGNNCC 2 cut(s) 52, 444
BspMI ACCTGC 1 cut(s) 619
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 45, 375
BssMI GATC 2 cut(s) 58, 433
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 159, 512
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 206, 542
BstDEI CTNAG 2 cut(s) 179, 491
BstDSI CCRYGG 2 cut(s) 45, 375
BstF5I GGATG 3 cut(s) 328, 385, 562
BstKTI GATC 2 cut(s) 61, 436
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 58, 433
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstNI CCWGG 2 cut(s) 159, 512
BstSCI CCNGG 2 cut(s) 157, 510
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 5 cut(s) 198, 312, 409, 490, 519
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 2 cut(s) 562, 675
BtgI CCRYGG 2 cut(s) 45, 375
BtsCI GGATG 3 cut(s) 328, 385, 562
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 206, 542
Cfr13I GGNCC 1 cut(s) 560
CseI GACGC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 510
Csp6I GTAC 1 cut(s) 443
CviAII CATG 3 cut(s) 123, 376, 677
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 2 cut(s) 179, 491
DpnI GATC 2 cut(s) 60, 435
DpnII GATC 2 cut(s) 58, 433
EaeI YGGCCR 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 157, 510
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 126, 379, 680
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 122, 375, 676
FauI CCCGC 1 cut(s) 627
Fnu4HI GCNGC 5 cut(s) 187, 326, 423, 479, 533
FokI GGATG 3 cut(s) 315, 392, 569
Fsp4HI GCNGC 5 cut(s) 187, 326, 423, 479, 533
GluI GCNGC 5 cut(s) 187, 326, 423, 479, 533
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 2 cut(s) 562, 675
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 126, 379, 680
HindIII AAGCTT 1 cut(s) 538
HinfI GANTC 2 cut(s) 338, 585
HphI GGTGA 3 cut(s) 18, 288, 649
Hpy166II GTNNAC 5 cut(s) 147, 273, 305, 391, 708
Hpy188I TCNGA 2 cut(s) 10, 282
Hpy188III TCNNGA 3 cut(s) 132, 223, 720
Hpy8I GTNNAC 5 cut(s) 147, 273, 305, 391, 708
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 2 cut(s) 179, 491
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 126, 379, 680
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 2 cut(s) 58, 433
LmnI GCTCC 2 cut(s) 157, 213
Lsp1109I GCAGC 5 cut(s) 198, 312, 409, 490, 519
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 510
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 60, 435
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 58, 433
MboII GAAGA 1 cut(s) 443
MflI RGATCY 1 cut(s) 433
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 4 cut(s) 251, 291, 397, 466
MluNI TGGCCA 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 85, 98, 456, 507, 547
Mox20I TGGCCA 1 cut(s) 675
MroXI GAANNNNTTC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 675
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 121
Msp20I TGGCCA 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 159, 512
MvaI CCWGG 2 cut(s) 159, 512
MwoI GCNNNNNNNGC 1 cut(s) 541
NcoI CCATGG 1 cut(s) 375
NdeII GATC 2 cut(s) 58, 433
NlaIII CATG 3 cut(s) 126, 379, 680
NlaIV GGNNCC 2 cut(s) 52, 444
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 24
PaqCI CACCTGC 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 338, 585
PkrI GCNGC 5 cut(s) 188, 327, 424, 480, 534
PshBI ATTAAT 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 157, 510
PspGI CCWGG 2 cut(s) 157, 510
PspN4I GGNNCC 2 cut(s) 52, 444
PspPI GGNCC 1 cut(s) 560
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 121
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 5 cut(s) 187, 326, 423, 479, 533
Sau3AI GATC 2 cut(s) 58, 433
Sau96I GGNCC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 159, 512
SexAI ACCWGGT 1 cut(s) 510
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 4 cut(s) 251, 291, 397, 466
SsiI CCGC 2 cut(s) 29, 634
StyD4I CCNGG 2 cut(s) 157, 510
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 336
TasI AATT 4 cut(s) 251, 291, 397, 466
TfiI GAWTC 2 cut(s) 338, 585
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 5 cut(s) 186, 325, 422, 478, 532
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 2 cut(s) 111, 693
TspGWI ACGGA 1 cut(s) 321
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 2 cut(s) 251, 291
XmnI GAANNNNTTC 1 cut(s) 118
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.