Prupe.1G413100_v2.0.a1

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001640
Physical Location & Seq
Forward (+)
36007150 .. 36012239
5090 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G413100.1

Sequence Viewer

Length: 1215 bp
ATGAAGAACCCAGTCGTGACGAGTTGGACCGAGTCGACTCGGAATCTCTTCGAACCAGTCATCGTTTTAGTCATCACTTTCGCTGCCATCGTCAAACTATCTCAGTCTCTCTATCGCTACAACCTCCGTCGCCGCTCAAGAGCTCGCTCTGGAACGATGTCGTCGTCTTCTTCATCTGACAACGGCACCGGCGTCCAAGCTCGTAGGCGCAGTCGTATTCTCTCCAGCAAGCTCTACTTCGACATCCCCAACTCCAAGGTGCCGTTGATTTACTCGTCTGCATACGATATTACTTTTCTTGGCATCGAGAAGCTGCACCCGTTTGATTCGAGTAAGTGGGGTCGGATATGTGGGTTTCTGTTGGTGGATAATGTTGTGGACAAAAATTGCATCGTAGAGCCTCTGGAAGCTTCAAAGAATGATCTCCTTGTGGTACACTCGGAAGCATACTTGAATTGTCTAAAGAAAAGTGCAAATGTTGCTATGATAATTGAGGTACCTCATGTTGCCGTATTCCCGAATTGCCTTGTGCAGCAGAAAGTTCTCTATCCATTTCGCAACCAGGTGGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTTGGGGGAGGGTTTCATCATTGCTCTGGGGAAAAAGGAGGGGGATTCTGTGCTTATGCAGATATTTCTCTTTGCATACACTTTGCCTTTGAGCGGTTAAACATATCAAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACGGATTTTGCCAATGACAGTCGAGTCTATATACTGGATGTGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGAAGATACATTGATCAAAAGGTTGAAGTAGTGAGTGGAACTACAACAAATGAGTACTTGAGAAAATTAGATGAAGCACTTGAGGTTTCTGTTCATAGTTTTGATCCTGAGTTGATAGTCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTCTGGGCAGGTTGAAGATCAGTCCTGATGGGATAACAAATAGAGACGAGAAAGTTTTCAGGTTTGCTCGTAAGAGGAACATTCCTATTGTCATGCTCACATCAGGTGGTTACATGAAGTCTAGTGCCAGAGTTATAGCAGACTCGATAACCAATCTCTCAAACAAATGCCTTATAGATACAGGTAAAAACATGACTGCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

405

Amino Acids

45.01

Weight (kDa)

8.76

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 800
Acc36I ACCTGC 1 cut(s) 1008
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 185, 259, 496
AccBSI CCGCTC 2 cut(s) 135, 715
AccI GTMKAC 2 cut(s) 35, 975
AciI CCGC 2 cut(s) 133, 715
AclWI GGATC 2 cut(s) 953, 1001
AcoI YGGCCR 1 cut(s) 769
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 4 cut(s) 435, 498, 821, 911
AfiI CCNNNNNNNGG 3 cut(s) 568, 714, 778
AgsI TTSAA 4 cut(s) 414, 454, 881, 1024
AjnI CCWGG 2 cut(s) 561, 826
AluBI AGCT 6 cut(s) 143, 200, 232, 313, 410, 592
AluI AGCT 6 cut(s) 143, 200, 232, 313, 410, 592
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 111, 1047
AlwI GGATC 2 cut(s) 953, 1001
AoxI GGCC 2 cut(s) 612, 769
ApeKI GCWGC 4 cut(s) 83, 313, 532, 584
Asp700I GAANNNNTTC 2 cut(s) 47, 1064
Asp718I GGTACC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 27, 612
AsuHPI GGTGA 1 cut(s) 745
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 771
BanI GGYRCC 3 cut(s) 185, 259, 496
BanII GRGCYC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 4 cut(s) 70, 300, 544, 571
BccI CCATC 5 cut(s) 95, 603, 623, 995, 1031
BceAI ACGGC 3 cut(s) 199, 247, 494
BciT130I CCWGG 2 cut(s) 563, 828
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 111, 1047
BfaI CTAG 2 cut(s) 998, 1131
BfuAI ACCTGC 1 cut(s) 1008
BisI GCNGC 5 cut(s) 84, 133, 314, 533, 585
BlsI GCNGC 5 cut(s) 85, 134, 315, 534, 586
BmcAI AGTACT 1 cut(s) 911
Bme1390I CCNGG 2 cut(s) 563, 828
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 27, 612
BmiI GGNNCC 3 cut(s) 187, 261, 498
BmrFI CCNGG 2 cut(s) 563, 828
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 3 cut(s) 312, 399, 742
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 3 cut(s) 121, 934, 956
BsaBI GATNNNNATC 2 cut(s) 756, 1005
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 255, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 714, 778
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 11, 56, 816
Bse3DI GCAATG 1 cut(s) 640
Bse8I GATNNNNATC 2 cut(s) 756, 1005
BseBI CCWGG 2 cut(s) 563, 828
BseDI CCNNGG 2 cut(s) 255, 826
BseGI GGATG 3 cut(s) 243, 614, 820
BseJI GATNNNNATC 2 cut(s) 756, 1005
BseLI CCNNNNNNNGG 3 cut(s) 568, 714, 778
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 2 cut(s) 116, 954
BseNI ACTGG 3 cut(s) 11, 56, 816
BseXI GCAGC 4 cut(s) 70, 300, 544, 571
BsgI GTGCAG 2 cut(s) 299, 551
BshFI GGCC 2 cut(s) 614, 771
BshNI GGYRCC 3 cut(s) 185, 259, 496
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 3 cut(s) 568, 714, 778
BsmAI GTCTC 2 cut(s) 111, 1047
BsmBI CGTCTC 1 cut(s) 1047
BsnI GGCC 2 cut(s) 614, 771
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
BspACI CCGC 2 cut(s) 133, 715
BspANI GGCC 2 cut(s) 614, 771
BspCNI CTCAG 2 cut(s) 115, 955
BspLI GGNNCC 3 cut(s) 187, 261, 498
BspMI ACCTGC 1 cut(s) 1008
BspPI GGATC 2 cut(s) 953, 1001
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 3 cut(s) 185, 259, 496
BsrBI CCGCTC 2 cut(s) 135, 715
BsrDI GCAATG 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 3 cut(s) 11, 56, 816
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 255, 826
BssMI GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 563, 828
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 192
BstAPI GCANNNNNTGC 2 cut(s) 479, 593
BstAUI TGTACA 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 145, 230, 594
BstDEI CTNAG 2 cut(s) 102, 963
BstF5I GGATG 3 cut(s) 243, 614, 820
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 6 cut(s) 424, 748, 871, 961, 1009, 1029
BstMAI GTCTC 2 cut(s) 111, 1047
BstMBI GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
BstMWI GCNNNNNNNGC 2 cut(s) 479, 593
BstNI CCWGG 2 cut(s) 563, 828
BstSCI CCNGG 2 cut(s) 561, 826
BstV1I GCAGC 4 cut(s) 70, 300, 544, 571
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 614, 771
BtsCI GGATG 3 cut(s) 243, 614, 820
BveI ACCTGC 1 cut(s) 1008
Cac8I GCNNGC 3 cut(s) 145, 230, 594
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 27, 612
CseI GACGC 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 4 cut(s) 434, 497, 820, 910
CviAII CATG 6 cut(s) 503, 773, 1102, 1123, 1201, 1212
CviQI GTAC 4 cut(s) 434, 497, 820, 910
DdeI CTNAG 2 cut(s) 102, 963
DpnI GATC 6 cut(s) 423, 747, 870, 960, 1008, 1028
DpnII GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
DrdI GACNNNNNNGTC 1 cut(s) 800
DseDI GACNNNNNNGTC 1 cut(s) 800
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 561, 826
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 1047
FaeI CATG 6 cut(s) 506, 776, 1105, 1126, 1204, 1215
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 6 cut(s) 502, 772, 1101, 1122, 1200, 1211
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 2 cut(s) 35, 975
Fnu4HI GCNGC 5 cut(s) 84, 133, 314, 533, 585
FokI GGATG 3 cut(s) 230, 621, 827
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 5 cut(s) 84, 133, 314, 533, 585
FspBI CTAG 2 cut(s) 998, 1131
GlaI GCGC 1 cut(s) 209
GluI GCNGC 5 cut(s) 84, 133, 314, 533, 585
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 2 cut(s) 614, 771
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 6 cut(s) 506, 776, 1105, 1126, 1204, 1215
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 2 cut(s) 408, 590
HinfI GANTC 7 cut(s) 32, 37, 43, 326, 666, 801, 1151
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 5 cut(s) 36, 379, 436, 820, 976
Hpy188I TCNGA 4 cut(s) 42, 178, 345, 442
Hpy8I GTNNAC 5 cut(s) 36, 379, 436, 820, 976
Hpy99I CGWCG 2 cut(s) 132, 166
HpyCH4III ACNGT 1 cut(s) 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 593
HpyF3I CTNAG 2 cut(s) 102, 963
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 6 cut(s) 506, 776, 1105, 1126, 1204, 1215
HspAI GCGC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
Lsp1109I GCAGC 4 cut(s) 70, 300, 544, 571
LweI GCATC 3 cut(s) 312, 399, 742
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 2 cut(s) 998, 1131
MaeIII GTNAC 2 cut(s) 16, 1118
MalI GATC 6 cut(s) 423, 747, 870, 960, 1008, 1028
MbiI CCGCTC 2 cut(s) 135, 715
MboI GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
MboII GAAGA 6 cut(s) 16, 40, 159, 162, 870, 1036
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 5 cut(s) 385, 454, 489, 520, 920
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 4 cut(s) 31, 41, 810, 1145
MmeI TCCRAC 2 cut(s) 5, 323
Mox20I TGGCCA 1 cut(s) 771
MroXI GAANNNNTTC 2 cut(s) 47, 1064
MscI TGGCCA 1 cut(s) 771
MseI TTAA 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 771
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 563, 828
MvaI CCWGG 2 cut(s) 563, 828
MwoI GCNNNNNNNGC 2 cut(s) 479, 593
NdeII GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
NlaIII CATG 6 cut(s) 506, 776, 1105, 1126, 1204, 1215
NlaIV GGNNCC 3 cut(s) 187, 261, 498
NmuCI GTSAC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 161, 189
PdmI GAANNNNTTC 2 cut(s) 47, 1064
PfeI GAWTC 3 cut(s) 43, 326, 666
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 5 cut(s) 85, 134, 315, 534, 586
PleI GAGTC 4 cut(s) 31, 40, 809, 1145
PpsI GAGTC 4 cut(s) 31, 40, 809, 1145
Psp124BI GAGCTC 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 561, 826
PspGI CCWGG 2 cut(s) 561, 826
PspN4I GGNNCC 3 cut(s) 187, 261, 498
PspPI GGNCC 2 cut(s) 27, 612
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 4 cut(s) 435, 498, 821, 911
RsaNI GTAC 4 cut(s) 434, 497, 820, 910
SacI GAGCTC 1 cut(s) 145
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 5 cut(s) 84, 133, 314, 533, 585
Sau3AI GATC 6 cut(s) 421, 745, 868, 958, 1006, 1026
Sau96I GGNCC 2 cut(s) 27, 612
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 4 cut(s) 31, 41, 810, 1145
ScrFI CCNGG 2 cut(s) 563, 828
SduI GDGCHC 1 cut(s) 145
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 3 cut(s) 312, 399, 742
SfuI TTCGAA 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 3 cut(s) 136, 913, 935
SmoI CTYRAG 3 cut(s) 136, 913, 935
Sse9I AATT 5 cut(s) 385, 454, 489, 520, 920
SsiI CCGC 2 cut(s) 133, 715
SspMI CTAG 2 cut(s) 998, 1131
SstI GAGCTC 1 cut(s) 145
StyD4I CCNGG 2 cut(s) 561, 826
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 797
TaqI TCGA 7 cut(s) 35, 51, 240, 306, 329, 799, 1154
TaqII GACCGA 1 cut(s) 44
TasI AATT 5 cut(s) 385, 454, 489, 520, 920
TatI WGTACW 2 cut(s) 819, 909
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 43, 326, 666
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 4 cut(s) 83, 313, 532, 584
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 8 cut(s) 17, 162, 626, 789, 864, 938, 942, 1139
TspGWI ACGGA 2 cut(s) 116, 794
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 997
XmiI GTMKAC 2 cut(s) 35, 975
XmnI GAANNNNTTC 2 cut(s) 47, 1064
XspI CTAG 2 cut(s) 998, 1131
ZrmI AGTACT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.