Rroxscaffold_7G00158280

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001640
Physical Location & Seq
Forward (+)
1769611 .. 1773849
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158280.1

Sequence Viewer

Length: 1194 bp
ATGAGCAACCGAGTCATTTCGATGTGGACCGGTTCGACTCGGAACGGAGTCATAGTCATAGTCCTCACCTTCGCCGCCACCGTCAAACTCTCTCACTCTCTCTACCGCAAGCTCCGCCGCTCAAGAACTCGCTCCGGAACGATGTCGTTTGCTGCTCCACCGGAAAACGACACCGAATCTCTCAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACCTCGACGTCCCGAGCTCCAAGGTGCCGTTGATTTACTCTTCGACGTATGATATCGCATTTCTCGGCATTGAGAAGCTGCACCCGTTCGATTCGGCTAAATGGGGTCGGATATGTAGATTCCTGTCCATGGATGATGTTGTGGACAAAAATTGCATTGTGGAGCCAAAGGAAGCTACAAAGGAAGATCTTCTTGTGGTGCATACAGAAGCATACTTGAATAGTCTAAAGAAAAGTGCAGATGTTGCTATGATAATTGAGGTACCTCCGGTTGCCCTATTTCCGAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCATTTCGCAACCAGGTGGGGGGAACTATCTTGGCTGCCAAGCTTGCAAAAGAACGAGGATGGGCCATCAATGTGGGAGGAGGGTTTCATCACTGTTGTGGGGGGAAAGGAGGTGGATTCTGTGCTTATGCCGATATTTCTCTTTGCATACATTTTGCCTTTGTGCGCTTAAACATATCAAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACAGTCGAGTCTATATCCTGGAAATGTACAACCCTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGAGTGGCACTACAACAGCCGAGTACTTGAGAAAGTTAGATGAAGCTCTTGAGGTTGCTGCTCATAATTTTGCTCCTGAGTTGATAGTCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTCTGGGCAGGTTGAAGATCAGTCCTGATGGGATAACTCATAGGGATGAGAAAGTCTTCAGGTTTGCTCTCGAGAGGAATATTCCCATTGTCATGCTCACATCAGGTGGTTACATGAAGTCTAGTGCAAGAGTTATTGCAGACTCGATAGCCAATCTCTCAAACAAATCCCTGATCGATATGGGGAGAAAGACTTCTTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

397

Amino Acids

44.02

Weight (kDa)

8.71

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 99 - 378 3.9e-57 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AatII GACGTC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 987
Acc65I GGTACC 1 cut(s) 475
AccB1I GGYRCC 2 cut(s) 238, 475
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 954
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 4 cut(s) 75, 106, 115, 118
AclWI GGATC 1 cut(s) 980
AcoI YGGCCR 1 cut(s) 748
AcuI CTGAAG 1 cut(s) 1030
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 3 cut(s) 477, 800, 890
AfiI CCNNNNNNNGG 2 cut(s) 343, 547
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 433, 860, 1003
AjnI CCWGG 3 cut(s) 540, 789, 805
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 7 cut(s) 112, 211, 231, 292, 389, 571, 911
AluI AGCT 7 cut(s) 112, 211, 231, 292, 389, 571, 911
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 1 cut(s) 980
Ama87I CYCGRG 2 cut(s) 226, 1058
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 2 cut(s) 591, 748
ApeKI GCWGC 6 cut(s) 152, 189, 292, 511, 563, 923
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 3 cut(s) 402, 1043, 1180
Asp718I GGTACC 1 cut(s) 475
AspLEI GCGC 2 cut(s) 189, 696
AspS9I GGNCC 2 cut(s) 27, 591
AsuHPI GGTGA 2 cut(s) 58, 724
AvaI CYCGRG 2 cut(s) 226, 1058
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 750
BanI GGYRCC 2 cut(s) 238, 475
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 1036
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 6 cut(s) 139, 201, 279, 523, 550, 910
BccI CCATC 4 cut(s) 582, 602, 974, 1010
BceAI ACGGC 2 cut(s) 177, 226
BciT130I CCWGG 3 cut(s) 542, 791, 807
BclI TGATCA 1 cut(s) 847
BfaI CTAG 2 cut(s) 977, 1110
BfuAI ACCTGC 1 cut(s) 987
BglII AGATCT 1 cut(s) 400
BisI GCNGC 8 cut(s) 75, 118, 153, 190, 293, 512, 564, 924
BlsI GCNGC 8 cut(s) 76, 119, 154, 191, 294, 513, 565, 925
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 3 cut(s) 542, 791, 807
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 2 cut(s) 226, 1058
BmgT120I GGNCC 2 cut(s) 27, 591
BmiI GGNNCC 3 cut(s) 240, 378, 477
BmrFI CCNGG 3 cut(s) 542, 791, 807
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 1036
BpmI CTGGAG 1 cut(s) 187
BpuEI CTTGAG 3 cut(s) 106, 913, 935
Bsa29I ATCGAT 1 cut(s) 1164
BsaBI GATNNNNATC 2 cut(s) 735, 984
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 234, 342, 805
BsaWI WCCGGW 4 cut(s) 29, 134, 160, 481
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 547
Bse118I RCCGGY 1 cut(s) 29
Bse8I GATNNNNATC 2 cut(s) 735, 984
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 3 cut(s) 542, 791, 807
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 3 cut(s) 234, 342, 805
BseGI GGATG 3 cut(s) 352, 593, 1039
BseJI GATNNNNATC 2 cut(s) 735, 984
BseLI CCNNNNNNNGG 2 cut(s) 343, 547
BseMII CTCAG 3 cut(s) 196, 538, 933
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 6 cut(s) 139, 201, 279, 523, 550, 910
BsgI GTGCAG 3 cut(s) 278, 471, 530
BshFI GGCC 2 cut(s) 593, 750
BshNI GGYRCC 2 cut(s) 238, 475
BshTI ACCGGT 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 1164
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 226, 1058
BsiSI CCGG 4 cut(s) 30, 135, 161, 482
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 343, 547
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 2 cut(s) 593, 750
BsoBI CYCGRG 2 cut(s) 226, 1058
Bsp1286I GDGCHC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 4 cut(s) 75, 106, 115, 118
BspANI GGCC 2 cut(s) 593, 750
BspCNI CTCAG 3 cut(s) 195, 537, 934
BspDI ATCGAT 1 cut(s) 1164
BspEI TCCGGA 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 240, 378, 477
BspMI ACCTGC 1 cut(s) 987
BspPI GGATC 1 cut(s) 980
BspT107I GGYRCC 2 cut(s) 238, 475
BsrBI CCGCTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 798
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 234, 342, 805
BssMI GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 234, 342
Bst2UI CCWGG 3 cut(s) 542, 791, 807
Bst4CI ACNGT 3 cut(s) 82, 623, 776
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 110, 209, 573
BstDEI CTNAG 3 cut(s) 182, 524, 942
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 352, 593, 1039
BstHHI GCGC 2 cut(s) 189, 696
BstKTI GATC 6 cut(s) 403, 727, 850, 988, 1008, 1164
BstMBI GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
BstMWI GCNNNNNNNGC 3 cut(s) 114, 458, 572
BstNI CCWGG 3 cut(s) 542, 791, 807
BstSCI CCNGG 3 cut(s) 540, 789, 805
BstV1I GCAGC 6 cut(s) 139, 201, 279, 523, 550, 910
BstV2I GAAGAC 1 cut(s) 1036
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 1164
BsuRI GGCC 2 cut(s) 593, 750
BsuTUI ATCGAT 1 cut(s) 1164
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 3 cut(s) 352, 593, 1039
BtsIMutI CAGTG 1 cut(s) 619
BveI ACCTGC 1 cut(s) 987
Cac8I GCNNGC 3 cut(s) 110, 209, 573
CfoI GCGC 2 cut(s) 189, 696
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 27, 591
ClaI ATCGAT 1 cut(s) 1164
CsiI ACCWGGT 1 cut(s) 540
Csp6I GTAC 3 cut(s) 476, 799, 889
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 4 cut(s) 343, 752, 1081, 1102
CviQI GTAC 3 cut(s) 476, 799, 889
DdeI CTNAG 3 cut(s) 182, 524, 942
DpnI GATC 6 cut(s) 402, 726, 849, 987, 1007, 1163
DpnII GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 234, 342
Eco24I GRGCYC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 1030
Eco88I CYCGRG 2 cut(s) 226, 1058
EcoICRI GAGCTC 1 cut(s) 231
EcoRII CCWGG 3 cut(s) 540, 789, 805
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 234, 342
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 234, 342
FaeI CATG 4 cut(s) 346, 755, 1084, 1105
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 209
FatI CATG 4 cut(s) 342, 751, 1080, 1101
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 8 cut(s) 75, 118, 153, 190, 293, 512, 564, 924
FokI GGATG 3 cut(s) 359, 600, 1046
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 8 cut(s) 75, 118, 153, 190, 293, 512, 564, 924
FspBI CTAG 2 cut(s) 977, 1110
GlaI GCGC 2 cut(s) 188, 695
GluI GCNGC 8 cut(s) 75, 118, 153, 190, 293, 512, 564, 924
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 2 cut(s) 593, 750
HapII CCGG 4 cut(s) 30, 135, 161, 482
HhaI GCGC 2 cut(s) 189, 696
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 346, 755, 1084, 1105
Hin6I GCGC 2 cut(s) 187, 694
HinP1I GCGC 2 cut(s) 187, 694
HindIII AAGCTT 1 cut(s) 569
HpaII CCGG 4 cut(s) 30, 135, 161, 482
HphI GGTGA 2 cut(s) 58, 724
Hpy166II GTNNAC 3 cut(s) 27, 358, 955
Hpy188I TCNGA 4 cut(s) 42, 324, 498, 852
Hpy8I GTNNAC 3 cut(s) 27, 358, 955
Hpy99I CGWCG 2 cut(s) 224, 262
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 3 cut(s) 82, 623, 776
HpyCH4IV ACGT 2 cut(s) 222, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 458, 572
HpyF3I CTNAG 3 cut(s) 182, 524, 942
HpySE526I ACGT 2 cut(s) 222, 260
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 346, 755, 1084, 1105
HspAI GCGC 2 cut(s) 187, 694
Kpn2I TCCGGA 1 cut(s) 134
KpnI GGTACC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
LmnI GCTCC 6 cut(s) 117, 137, 160, 236, 376, 943
Lsp1109I GCAGC 6 cut(s) 139, 201, 279, 523, 550, 910
LweI GCATC 1 cut(s) 721
MabI ACCWGGT 1 cut(s) 540
MaeI CTAG 2 cut(s) 977, 1110
MaeII ACGT 2 cut(s) 222, 260
MaeIII GTNAC 1 cut(s) 1097
MalI GATC 6 cut(s) 402, 726, 849, 987, 1007, 1163
MbiI CCGCTC 1 cut(s) 120
MboI GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
MboII GAAGA 6 cut(s) 246, 395, 410, 1015, 1036, 1176
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 4 cut(s) 364, 468, 499, 931
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 5 cut(s) 21, 31, 57, 789, 1124
MmeI TCCRAC 1 cut(s) 302
Mox20I TGGCCA 1 cut(s) 750
MroI TCCGGA 1 cut(s) 134
MroXI GAANNNNTTC 3 cut(s) 402, 1043, 1180
MscI TGGCCA 1 cut(s) 750
MseI TTAA 1 cut(s) 698
MslI CAYNNNNRTG 5 cut(s) 20, 599, 624, 1032, 1079
Msp20I TGGCCA 1 cut(s) 750
MspI CCGG 4 cut(s) 30, 135, 161, 482
MspR9I CCNGG 3 cut(s) 542, 791, 807
MvaI CCWGG 3 cut(s) 542, 791, 807
MwoI GCNNNNNNNGC 3 cut(s) 114, 458, 572
NcoI CCATGG 1 cut(s) 342
NdeII GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
NlaIII CATG 4 cut(s) 346, 755, 1084, 1105
NlaIV GGNNCC 3 cut(s) 240, 378, 477
NmeAIII GCCGAG 2 cut(s) 258, 910
OliI CACNNNNGTG 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 3 cut(s) 402, 1043, 1180
PfeI GAWTC 5 cut(s) 176, 305, 333, 645, 840
PfoI TCCNGGA 1 cut(s) 789
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 8 cut(s) 76, 119, 154, 191, 294, 513, 565, 925
PleI GAGTC 5 cut(s) 20, 31, 56, 788, 1124
PpsI GAGTC 5 cut(s) 20, 31, 56, 788, 1124
Psp124BI GAGCTC 1 cut(s) 233
Psp6I CCWGG 3 cut(s) 540, 789, 805
PspGI CCWGG 3 cut(s) 540, 789, 805
PspN4I GGNNCC 3 cut(s) 240, 378, 477
PspPI GGNCC 2 cut(s) 27, 591
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 3 cut(s) 477, 800, 890
RsaNI GTAC 3 cut(s) 476, 799, 889
RseI CAYNNNNRTG 5 cut(s) 20, 599, 624, 1032, 1079
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 8 cut(s) 75, 118, 153, 190, 293, 512, 564, 924
Sau3AI GATC 6 cut(s) 400, 724, 847, 985, 1005, 1161
Sau96I GGNCC 2 cut(s) 27, 591
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 5 cut(s) 21, 31, 57, 789, 1124
ScrFI CCNGG 3 cut(s) 542, 791, 807
SduI GDGCHC 1 cut(s) 233
SexAI ACCWGGT 1 cut(s) 540
SfaNI GCATC 1 cut(s) 721
Sfr274I CTCGAG 1 cut(s) 1058
SinI GGWCC 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 1058
SmiMI CAYNNNNRTG 5 cut(s) 20, 599, 624, 1032, 1079
SmlI CTYRAG 4 cut(s) 121, 892, 914, 1058
SmoI CTYRAG 4 cut(s) 121, 892, 914, 1058
Sse9I AATT 4 cut(s) 364, 468, 499, 931
SsiI CCGC 4 cut(s) 75, 106, 115, 118
SspI AATATT 1 cut(s) 1069
SspMI CTAG 2 cut(s) 977, 1110
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 540, 789, 805
StyI CCWWGG 2 cut(s) 234, 342
TaaI ACNGT 3 cut(s) 82, 623, 776
TaiI ACGT 2 cut(s) 225, 263
TaqI TCGA 9 cut(s) 20, 35, 219, 257, 303, 778, 1059, 1133, 1164
TasI AATT 4 cut(s) 364, 468, 499, 931
TatI WGTACW 2 cut(s) 798, 888
TauI GCSGC 2 cut(s) 77, 120
TfiI GAWTC 5 cut(s) 176, 305, 333, 645, 840
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 1 cut(s) 626
TseI GCWGC 6 cut(s) 152, 189, 292, 511, 563, 923
TspDTI ATGAA 6 cut(s) 605, 768, 832, 843, 921, 1118
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 976
XhoI CTCGAG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 954
XmnI GAANNNNTTC 3 cut(s) 402, 1043, 1180
XspI CTAG 2 cut(s) 977, 1110
ZraI GACGTC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.