Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Reverse (-)

6283812 .. 6286801

Gene Structure 2990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAAGCCGACATGAACTCTCTCTCCCCCTTCTCCCTTCTCTCTTTTACCAGCAACTATGGTCTCCGACCATCGGTTATTGTCACCGCTCAGCCCATACGCCGCGAGGAACCAACAATCTACAAACTATACGAGCGCGTTGGATCTCCCTCTACTCGATCGGCTATGATTGATAGTTCGGATTGGCATCCGTTCGATTCGGCTAAATGGGGTCGAGTATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGAGATGATGGGCCATCAATGTGGGAGGACTGGGTGCGGTTAAACATACTCAAGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGAAGTACTTCCATGTGGACTCAAGAACCCGATATGAATGTTGGGTTGCTGCTCATAATTTTGCTCCCGAGTTGATGGTCTACAATGCTAGAACCGATATTCTACATGGCGATCCTCGGGCGGTCATCCATGGAGGAGAAGAGGAAATTGCAGATATGATGCCTACAATTAAGGCTGCCAATTATCTTTTCACGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

210

Amino Acids

24.3

Weight (kDa)

5.55

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	2 cut(s)	105, 138
AciI	CCGC	4 cut(s)	87, 103, 373, 554
AclWI	GGATC	2 cut(s)	151, 539
AdeI	CACNNNGTG	1 cut(s)	630
AfaI	GTAC	2 cut(s)	411, 440
AfiI	CCNNNNNNNGG	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	1 cut(s)	605
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	3 cut(s)	281, 327, 428
AluI	AGCT	3 cut(s)	281, 327, 428
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	151, 539
Ama87I	CYCGRG	2 cut(s)	500, 549
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	4 cut(s)	281, 319, 482, 608
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	2 cut(s)	500, 549
BbvI	GCAGC	4 cut(s)	268, 306, 469, 595
BccI	CCATC	4 cut(s)	79, 338, 358, 502
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	522
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	5 cut(s)	103, 282, 320, 483, 609
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	5 cut(s)	104, 283, 321, 484, 610
BmcAI	AGTACT	2 cut(s)	411, 440
BmeT110I	CYCGRG	2 cut(s)	500, 549
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	196, 582
BmuI	ACTGGG	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	4 cut(s)	371, 434, 439, 452
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	234, 548, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	234, 548, 562
BseGI	GGATG	3 cut(s)	187, 244, 558
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	4 cut(s)	268, 306, 469, 595
Bsh1236I	CGCG	2 cut(s)	105, 138
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	161
BsiHKCI	CYCGRG	2 cut(s)	500, 549
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	2 cut(s)	500, 549
Bsp143I	GATC	4 cut(s)	143, 158, 292, 544
Bsp1720I	GCTNAGC	1 cut(s)	90
Bsp19I	CCATGG	2 cut(s)	234, 562
BspACI	CCGC	4 cut(s)	87, 103, 373, 554
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	105, 138
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	2 cut(s)	151, 539
BspTNI	GGTCTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	234, 548, 562
BssMI	GATC	4 cut(s)	143, 158, 292, 544
BssT1I	CCWWGG	2 cut(s)	234, 562
Bst6I	CTCTTC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	2 cut(s)	234, 562
BstF5I	GGATG	3 cut(s)	187, 244, 558
BstFNI	CGCG	2 cut(s)	105, 138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	146, 161, 295, 547
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	4 cut(s)	143, 158, 292, 544
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstUI	CGCG	2 cut(s)	105, 138
BstV1I	GCAGC	4 cut(s)	268, 306, 469, 595
BstX2I	RGATCY	2 cut(s)	143, 292
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	2 cut(s)	143, 292
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	2 cut(s)	234, 562
BtsCI	GGATG	3 cut(s)	187, 244, 558
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	410, 439
CviAII	CATG	5 cut(s)	13, 235, 446, 539, 563
CviQI	GTAC	2 cut(s)	410, 439
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	145, 160, 294, 546
DpnII	GATC	4 cut(s)	143, 158, 292, 544
DraIII	CACNNNGTG	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	234, 562
Eco31I	GGTCTC	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	500, 549
EcoT14I	CCWWGG	2 cut(s)	234, 562
ErhI	CCWWGG	2 cut(s)	234, 562
FaeI	CATG	5 cut(s)	16, 238, 449, 542, 566
FatI	CATG	5 cut(s)	12, 234, 445, 538, 562
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	5 cut(s)	103, 282, 320, 483, 609
FokI	GGATG	3 cut(s)	174, 251, 545
Fsp4HI	GCNGC	5 cut(s)	103, 282, 320, 483, 609
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	103, 282, 320, 483, 609
HaeIII	GGCC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	16, 238, 449, 542, 566
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	3 cut(s)	197, 225, 452
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	250, 451, 514
Hpy188I	TCNGA	2 cut(s)	68, 181
Hpy188III	TCNNGA	4 cut(s)	431, 456, 500, 625
Hpy8I	GTNNAC	3 cut(s)	250, 451, 514
HpyAV	CCTTC	2 cut(s)	40, 47
HpyCH4V	TGCA	5 cut(s)	261, 284, 322, 331, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	16, 238, 449, 542, 566
HspAI	GCGC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	143, 158, 292, 544
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	2 cut(s)	64, 352
Lsp1109I	GCAGC	4 cut(s)	268, 306, 469, 595
LweI	GCATC	2 cut(s)	196, 582
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	145, 160, 294, 546
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	4 cut(s)	143, 158, 292, 544
MboII	GAAGA	2 cut(s)	302, 584
MflI	RGATCY	2 cut(s)	143, 292
MluCI	AATT	5 cut(s)	256, 490, 579, 600, 613
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	91, 121
MnlI	CCTC	6 cut(s)	100, 160, 355, 558, 560, 568
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	2 cut(s)	377, 603
MslI	CAYNNNNRTG	1 cut(s)	355
MvnI	CGCG	2 cut(s)	105, 138
MwoI	GCNNNNNNNGC	1 cut(s)	328
NcoI	CCATGG	2 cut(s)	234, 562
NdeII	GATC	4 cut(s)	143, 158, 292, 544
NlaIII	CATG	5 cut(s)	16, 238, 449, 542, 566
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	197, 225
PkrI	GCNGC	5 cut(s)	104, 283, 321, 484, 610
Ple19I	CGATCG	1 cut(s)	161
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	143, 292
PvuI	CGATCG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	411, 440
RsaNI	GTAC	2 cut(s)	410, 439
RseI	CAYNNNNRTG	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	377, 603
SatI	GCNGC	5 cut(s)	103, 282, 320, 483, 609
Sau3AI	GATC	4 cut(s)	143, 158, 292, 544
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	2 cut(s)	411, 440
SchI	GAGTC	1 cut(s)	446
SetI	ASST	3 cut(s)	283, 329, 430
SfaNI	GCATC	2 cut(s)	196, 582
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	4 cut(s)	386, 413, 431, 454
SmoI	CTYRAG	4 cut(s)	386, 413, 431, 454
Sse9I	AATT	5 cut(s)	256, 490, 579, 600, 613
SsiI	CCGC	4 cut(s)	87, 103, 373, 554
SspMI	CTAG	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	234, 562
TaqI	TCGA	3 cut(s)	157, 195, 214
TasI	AATT	5 cut(s)	256, 490, 579, 600, 613
TatI	WGTACW	2 cut(s)	409, 438
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	197, 225
Tru1I	TTAA	2 cut(s)	377, 603
Tru9I	TTAA	2 cut(s)	377, 603
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	281, 319, 482, 608
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	17, 29, 438, 483
TspGWI	ACGGA	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	2 cut(s)	411, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.