RLG00000023632

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001640
Physical Location & Seq
Forward (+)
26279111 .. 26281017
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023632

Sequence Viewer

Length: 762 bp
ATGTCGTTTGCTGCTCTACCTGAAAACGCCGCCAAATCTCTCAGGTGCAGCCGTATTCTCTCCAGCAAGCTCTACTTTGACGTCCCGAGCTCCAAGGTAAAACCAGTATCTAAATTCGTCTGTGCTTTCAAGTTTACATTTCGGAATCTGAGAATTTCACCAAGTTTACATCTCGGCATTGAGAAGCTGCATCCGTTCGATTCGGCTAAATGGGGTCGGATATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGTACCTCCTGTTGCCCTGTTTCCAAATTGCCTTGTGCAGCAGAAAGTTCTCAGTCCTCCATTTCACAACCAGCCAACCAGGCAATTCGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGTCATCAATGTGGGAGGACTGGGTTTATCATTGTTGTGGGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCTGGTGATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAGATTTTGCCAATGACATCTATGTCCTAGATATGTACAACCTTGGAATATATCCATTTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTGAAGTAGCGAGTGGCACTACAACAACCGAGTACTCGAGAAAGATGAAGCTCTTGAGGTATATATATACTTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

254

Amino Acids

28.86

Weight (kDa)

7.56

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 156 - 221 1.7e-09 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
AasI GACNNNNNNGTC 1 cut(s) 611
AatII GACGTC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 526
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 2 cut(s) 113, 153
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 306, 626, 716
AgsI TTSAA 2 cut(s) 130, 686
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 6 cut(s) 70, 90, 187, 284, 417, 733
AluI AGCT 6 cut(s) 70, 90, 187, 284, 417, 733
Alw21I GWGCWC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 2 cut(s) 85, 718
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 6 cut(s) 11, 48, 187, 284, 340, 409
ApoI RAATTY 2 cut(s) 113, 153
AseI ATTAAT 1 cut(s) 555
Asp718I GGTACC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 150, 556
AvaI CYCGRG 2 cut(s) 85, 718
BalI TGGCCA 1 cut(s) 582
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 5 cut(s) 60, 174, 271, 352, 396
BccI CCATC 2 cut(s) 409, 428
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 382
BclI TGATCA 1 cut(s) 673
BfaI CTAG 1 cut(s) 617
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 382
BglII AGATCT 1 cut(s) 295
BisI GCNGC 7 cut(s) 12, 30, 49, 188, 285, 341, 410
BlsI GCNGC 7 cut(s) 13, 31, 50, 189, 286, 342, 411
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 1 cut(s) 382
BmeT110I CYCGRG 2 cut(s) 85, 718
BmiI GGNNCC 2 cut(s) 306, 399
BmrFI CCNGG 1 cut(s) 382
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 199, 553
BmuI ACTGGG 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 757
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 93, 237, 631
Bse1I ACTGG 2 cut(s) 104, 461
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 93, 237, 631
BseGI GGATG 3 cut(s) 190, 247, 439
BseJI GATNNNNATC 1 cut(s) 567
BseMII CTCAG 3 cut(s) 55, 140, 367
BseNI ACTGG 2 cut(s) 104, 461
BseXI GCAGC 5 cut(s) 60, 174, 271, 352, 396
BsgI GTGCAG 3 cut(s) 67, 359, 554
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 2 cut(s) 85, 718
BslFI GGGAC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 582
BsoBI CYCGRG 2 cut(s) 85, 718
Bsp1286I GDGCHC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 2 cut(s) 295, 673
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 3 cut(s) 54, 141, 366
BspLI GGNNCC 2 cut(s) 306, 399
BspMI ACCTGC 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 104, 461
BssECI CCNNGG 3 cut(s) 93, 237, 631
BssMI GATC 2 cut(s) 295, 673
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 3 cut(s) 93, 237, 631
Bst2UI CCWGG 1 cut(s) 382
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 418
BstAUI TGTACA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 68, 419
BstDEI CTNAG 3 cut(s) 41, 149, 353
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 190, 247, 439
BstKTI GATC 2 cut(s) 298, 676
BstMBI GATC 2 cut(s) 295, 673
BstMWI GCNNNNNNNGC 2 cut(s) 382, 418
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 380
BstV1I GCAGC 5 cut(s) 60, 174, 271, 352, 396
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 190, 247, 439
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 68, 419
CaiI CAGNNNCTG 1 cut(s) 541
Csp6I GTAC 3 cut(s) 305, 625, 715
CviAII CATG 2 cut(s) 238, 584
CviQI GTAC 3 cut(s) 305, 625, 715
DdeI CTNAG 3 cut(s) 41, 149, 353
DpnI GATC 2 cut(s) 297, 675
DpnII GATC 2 cut(s) 295, 673
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 93, 237, 631
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 85, 718
EcoICRI GAGCTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 3 cut(s) 93, 237, 631
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 3 cut(s) 93, 237, 631
FaeI CATG 2 cut(s) 241, 587
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 237, 583
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 7 cut(s) 12, 30, 49, 188, 285, 341, 410
FokI GGATG 3 cut(s) 177, 254, 446
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 7 cut(s) 12, 30, 49, 188, 285, 341, 410
FspBI CTAG 1 cut(s) 617
GluI GCNGC 7 cut(s) 12, 30, 49, 188, 285, 341, 410
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 582
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 241, 587
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 5 cut(s) 145, 200, 228, 492, 666
HphI GGTGA 2 cut(s) 150, 556
Hpy166II GTNNAC 3 cut(s) 135, 167, 253
Hpy188I TCNGA 4 cut(s) 144, 150, 219, 678
Hpy188III TCNNGA 4 cut(s) 85, 560, 720, 736
Hpy8I GTNNAC 3 cut(s) 135, 167, 253
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 418
HpyF3I CTNAG 3 cut(s) 41, 149, 353
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 241, 587
KpnI GGTACC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 2 cut(s) 295, 673
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 5 cut(s) 60, 174, 271, 352, 396
LweI GCATC 2 cut(s) 199, 553
MaeI CTAG 1 cut(s) 617
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 297, 675
MboI GATC 2 cut(s) 295, 673
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 6 cut(s) 113, 153, 259, 328, 386, 757
MluNI TGGCCA 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 7 cut(s) 318, 369, 424, 445, 479, 672, 732
Mox20I TGGCCA 1 cut(s) 582
MscI TGGCCA 1 cut(s) 582
MseI TTAA 2 cut(s) 555, 760
MslI CAYNNNNRTG 2 cut(s) 445, 471
Msp20I TGGCCA 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 382, 418
NcoI CCATGG 1 cut(s) 237
NdeII GATC 2 cut(s) 295, 673
NlaIII CATG 2 cut(s) 241, 587
NlaIV GGNNCC 2 cut(s) 306, 399
NmeAIII GCCGAG 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 526
PfeI GAWTC 5 cut(s) 145, 200, 228, 492, 666
PkrI GCNGC 7 cut(s) 13, 31, 50, 189, 286, 342, 411
PshBI ATTAAT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 306, 399
PstNI CAGNNNCTG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 3 cut(s) 306, 626, 716
RsaNI GTAC 3 cut(s) 305, 625, 715
RseI CAYNNNNRTG 2 cut(s) 445, 471
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 555, 760
SatI GCNGC 7 cut(s) 12, 30, 49, 188, 285, 341, 410
Sau3AI GATC 2 cut(s) 295, 673
ScaI AGTACT 1 cut(s) 716
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 2 cut(s) 199, 553
Sfr274I CTCGAG 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 445, 471
SmlI CTYRAG 2 cut(s) 718, 736
SmoI CTYRAG 2 cut(s) 718, 736
Sse9I AATT 6 cut(s) 113, 153, 259, 328, 386, 757
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 3 cut(s) 93, 237, 631
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 198, 719
TasI AATT 6 cut(s) 113, 153, 259, 328, 386, 757
TatI WGTACW 2 cut(s) 624, 714
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 5 cut(s) 145, 200, 228, 492, 666
Tru1I TTAA 2 cut(s) 555, 760
Tru9I TTAA 2 cut(s) 555, 760
TseI GCWGC 6 cut(s) 11, 48, 187, 284, 340, 409
TspDTI ATGAA 4 cut(s) 600, 658, 669, 743
TspGWI ACGGA 1 cut(s) 183
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 113, 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 718
XspI CTAG 1 cut(s) 617
ZraI GACGTC 1 cut(s) 82
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.