Rmu_sc0004688.1_g000027

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004688.1
OG0001640
Physical Location & Seq
Forward (+)
78755 .. 81545
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004688.1_g000027.1.cds

Sequence Viewer

Length: 1245 bp
atgtggaccggttcgactccgaaccgagtcatagtcatagtcctcactttcgccgccaccgtcaaactctctcactctctctaccgcagactccgccgctcaagaactcgctccggaacgatgtcgtttgctgctccaccggaaaacgacaccgaatctctcagacgcagccgtattctatccagcaagctctacctcgacgtcccgagctccaaggtaaacccagcatctaaattcgtctgtgctttcaagtttacgtttcggaatctgagaaatttcgccgatcaggtgccgttgatttactcttcgacgtatgatatcgcatttctcggcattgagaagctgcacccgttcgattcggctaaatggggtcggatatgtagattcctgtccatggatgatgttgtggacaaaaattgcattgtagaaccaaaggaagctacaaacgaggatcttcttgtggtgcatacagaagcatacttgaacagtctaaagaaaagtgcagatgttgctatgataattgaggtacctcctgttgccctatttccgaattgccttgtgcagcataaagttctcagtccatttcgcaaccaggtggggggaactatcttggctgccaagcttgcaaaagaacgaggatgggccatcaatgtgggaggagggtttcatcattgttgtgggggaaaaggaggtggattctgtgcttatgctgatatttctctttgcatacattttgcctttgtgcggttaaacatatcaagggtgatgattattgatcttgatgcacatcaaggaaatggccatgaaacagattttgccaatgacagtcgagtctatatcctggatatgtacaaccctggaatatatccatttgattatgaagcaaggagattcattgatcagagggttgaagtagcgagtggcactacaacagccgagtacttgagaaagttagatgaagctcttgaggttgctgctcataattttgctcctgagttgatagtctacaatgctggaactgatattctagatggtgatcctctgggcaggttgaagatcagtcctgatgggataactcatagggatgagaaagtcttcaggtttgctctcgagaggaatattcccattgtcatgctcacatcaggtggttacatgaagtctagtgcaagagttatcgcagactcgatagccaatctctcaaacaaatccctgattgatatggggagaaagacttcttctatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

414

Amino Acids

46.08

Weight (kDa)

8.79

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AatII GACGTC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 1038
Acc65I GGTACC 1 cut(s) 526
AccB1I GGYRCC 2 cut(s) 289, 526
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 1005
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 5 cut(s) 54, 85, 94, 97, 745
AclWI GGATC 2 cut(s) 459, 1031
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 2 cut(s) 233, 274
AcuI CTGAAG 1 cut(s) 1081
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 3 cut(s) 528, 851, 941
AfiI CCNNNNNNNGG 3 cut(s) 394, 598, 744
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 4 cut(s) 250, 484, 911, 1054
AjnI CCWGG 3 cut(s) 591, 840, 856
AluBI AGCT 6 cut(s) 190, 210, 343, 440, 622, 962
AluI AGCT 6 cut(s) 190, 210, 343, 440, 622, 962
Alw21I GWGCWC 1 cut(s) 212
AlwI GGATC 2 cut(s) 459, 1031
Ama87I CYCGRG 2 cut(s) 205, 1109
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 2 cut(s) 642, 799
ApeKI GCWGC 6 cut(s) 131, 168, 343, 562, 614, 974
ApoI RAATTY 2 cut(s) 233, 274
AsiGI ACCGGT 1 cut(s) 8
Asp700I GAANNNNTTC 2 cut(s) 1094, 1231
Asp718I GGTACC 1 cut(s) 526
AspS9I GGNCC 2 cut(s) 6, 642
AsuHPI GGTGA 2 cut(s) 775, 1046
AvaI CYCGRG 2 cut(s) 205, 1109
AvaII GGWCC 1 cut(s) 6
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 2 cut(s) 289, 526
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 1087
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 6 cut(s) 118, 180, 330, 574, 601, 961
BccI CCATC 4 cut(s) 633, 653, 1025, 1061
BceAI ACGGC 2 cut(s) 156, 277
BciT130I CCWGG 3 cut(s) 593, 842, 858
BclI TGATCA 1 cut(s) 898
BfaI CTAG 2 cut(s) 1028, 1161
BfuAI ACCTGC 1 cut(s) 1038
BisI GCNGC 8 cut(s) 54, 97, 132, 169, 344, 563, 615, 975
BlsI GCNGC 8 cut(s) 55, 98, 133, 170, 345, 564, 616, 976
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 3 cut(s) 593, 842, 858
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 2 cut(s) 205, 1109
BmgT120I GGNCC 2 cut(s) 6, 642
BmiI GGNNCC 2 cut(s) 291, 528
BmrFI CCNGG 3 cut(s) 593, 842, 858
BmsI GCATC 2 cut(s) 236, 772
BpiI GAAGAC 1 cut(s) 1087
BpuEI CTTGAG 3 cut(s) 85, 964, 986
BsaBI GATNNNNATC 2 cut(s) 786, 1035
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 213, 393, 856
BsaWI WCCGGW 3 cut(s) 8, 113, 139
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 598, 744
Bse118I RCCGGY 1 cut(s) 8
Bse8I GATNNNNATC 2 cut(s) 786, 1035
BseAI TCCGGA 1 cut(s) 113
BseBI CCWGG 3 cut(s) 593, 842, 858
BseDI CCNNGG 3 cut(s) 213, 393, 856
BseGI GGATG 3 cut(s) 403, 644, 1090
BseJI GATNNNNATC 2 cut(s) 786, 1035
BseLI CCNNNNNNNGG 3 cut(s) 394, 598, 744
BseMII CTCAG 4 cut(s) 175, 260, 589, 984
BseRI GAGGAG 1 cut(s) 672
BseXI GCAGC 6 cut(s) 118, 180, 330, 574, 601, 961
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 3 cut(s) 329, 522, 581
BshFI GGCC 2 cut(s) 644, 801
BshNI GGYRCC 2 cut(s) 289, 526
BshTI ACCGGT 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 2 cut(s) 205, 1109
BsiSI CCGG 3 cut(s) 9, 114, 140
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 394, 598, 744
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 644, 801
BsoBI CYCGRG 2 cut(s) 205, 1109
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 849
Bsp143I GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 5 cut(s) 54, 85, 94, 97, 745
BspANI GGCC 2 cut(s) 644, 801
BspCNI CTCAG 4 cut(s) 174, 261, 588, 985
BspEI TCCGGA 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 291, 528
BspMI ACCTGC 1 cut(s) 1038
BspPI GGATC 2 cut(s) 459, 1031
BspT107I GGYRCC 2 cut(s) 289, 526
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 849
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 213, 393, 856
BssMI GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 213, 393
Bst2UI CCWGG 3 cut(s) 593, 842, 858
Bst4CI ACNGT 3 cut(s) 61, 488, 827
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 509
BstAUI TGTACA 1 cut(s) 849
BstC8I GCNNGC 2 cut(s) 188, 624
BstDEI CTNAG 4 cut(s) 161, 269, 575, 993
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 403, 644, 1090
BstKTI GATC 6 cut(s) 286, 454, 778, 901, 1039, 1059
BstMBI GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
BstMWI GCNNNNNNNGC 3 cut(s) 93, 509, 623
BstNI CCWGG 3 cut(s) 593, 842, 858
BstSCI CCNGG 3 cut(s) 591, 840, 856
BstV1I GCAGC 6 cut(s) 118, 180, 330, 574, 601, 961
BstV2I GAAGAC 1 cut(s) 1087
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 652
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 2 cut(s) 644, 801
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 403, 644, 1090
BveI ACCTGC 1 cut(s) 1038
Cac8I GCNNGC 2 cut(s) 188, 624
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 6, 642
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 3 cut(s) 527, 850, 940
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 4 cut(s) 394, 803, 1132, 1153
CviQI GTAC 3 cut(s) 527, 850, 940
DdeI CTNAG 4 cut(s) 161, 269, 575, 993
DpnI GATC 6 cut(s) 285, 453, 777, 900, 1038, 1058
DpnII GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 213, 393
Eco24I GRGCYC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 1081
Eco88I CYCGRG 2 cut(s) 205, 1109
EcoICRI GAGCTC 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 591, 840, 856
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 213, 393
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 213, 393
FaeI CATG 4 cut(s) 397, 806, 1135, 1156
FaqI GGGAC 1 cut(s) 188
FatI CATG 4 cut(s) 393, 802, 1131, 1152
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 8 cut(s) 54, 97, 132, 169, 344, 563, 615, 975
FokI GGATG 3 cut(s) 410, 651, 1097
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 8 cut(s) 54, 97, 132, 169, 344, 563, 615, 975
FspBI CTAG 2 cut(s) 1028, 1161
GluI GCNGC 8 cut(s) 54, 97, 132, 169, 344, 563, 615, 975
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 644, 801
HapII CCGG 3 cut(s) 9, 114, 140
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 397, 806, 1135, 1156
HindIII AAGCTT 1 cut(s) 620
HpaII CCGG 3 cut(s) 9, 114, 140
HphI GGTGA 2 cut(s) 775, 1046
Hpy166II GTNNAC 5 cut(s) 6, 220, 255, 409, 1006
Hpy188I TCNGA 7 cut(s) 21, 164, 264, 270, 375, 549, 903
Hpy8I GTNNAC 5 cut(s) 6, 220, 255, 409, 1006
Hpy99I CGWCG 2 cut(s) 203, 313
HpyCH4III ACNGT 3 cut(s) 61, 488, 827
HpyCH4IV ACGT 3 cut(s) 201, 257, 311
HpyCH4V TGCA 9 cut(s) 346, 420, 466, 503, 562, 626, 726, 785, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 509, 623
HpyF3I CTNAG 4 cut(s) 161, 269, 575, 993
HpySE526I ACGT 3 cut(s) 201, 257, 311
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 397, 806, 1135, 1156
Kpn2I TCCGGA 1 cut(s) 113
KpnI GGTACC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
LmnI GCTCC 4 cut(s) 116, 139, 215, 994
Lsp1109I GCAGC 6 cut(s) 118, 180, 330, 574, 601, 961
LweI GCATC 2 cut(s) 236, 772
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 2 cut(s) 1028, 1161
MaeII ACGT 3 cut(s) 201, 257, 311
MaeIII GTNAC 1 cut(s) 1148
MalI GATC 6 cut(s) 285, 453, 777, 900, 1038, 1058
MbiI CCGCTC 1 cut(s) 99
MboI GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
MboII GAAGA 5 cut(s) 297, 446, 1066, 1087, 1227
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 6 cut(s) 233, 274, 415, 519, 550, 982
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 5 cut(s) 10, 36, 84, 840, 1175
MmeI TCCRAC 1 cut(s) 353
Mox20I TGGCCA 1 cut(s) 801
MroI TCCGGA 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 1094, 1231
MscI TGGCCA 1 cut(s) 801
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 4 cut(s) 650, 675, 1083, 1130
Msp20I TGGCCA 1 cut(s) 801
MspI CCGG 3 cut(s) 9, 114, 140
MspR9I CCNGG 3 cut(s) 593, 842, 858
MvaI CCWGG 3 cut(s) 593, 842, 858
MwoI GCNNNNNNNGC 3 cut(s) 93, 509, 623
NcoI CCATGG 1 cut(s) 393
NdeII GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
NlaIII CATG 4 cut(s) 397, 806, 1135, 1156
NlaIV GGNNCC 2 cut(s) 291, 528
NmeAIII GCCGAG 2 cut(s) 309, 961
PaeR7I CTCGAG 1 cut(s) 1109
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 1094, 1231
PfeI GAWTC 6 cut(s) 155, 265, 356, 384, 696, 891
PfoI TCCNGGA 1 cut(s) 840
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 8 cut(s) 55, 98, 133, 170, 345, 564, 616, 976
PleI GAGTC 5 cut(s) 10, 35, 84, 839, 1175
PpsI GAGTC 5 cut(s) 10, 35, 84, 839, 1175
Psp124BI GAGCTC 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 591, 840, 856
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 3 cut(s) 591, 840, 856
PspN4I GGNNCC 2 cut(s) 291, 528
PspPI GGNCC 2 cut(s) 6, 642
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 528, 851, 941
RsaNI GTAC 3 cut(s) 527, 850, 940
RseI CAYNNNNRTG 4 cut(s) 650, 675, 1083, 1130
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 8 cut(s) 54, 97, 132, 169, 344, 563, 615, 975
Sau3AI GATC 6 cut(s) 283, 451, 775, 898, 1036, 1056
Sau96I GGNCC 2 cut(s) 6, 642
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 5 cut(s) 10, 36, 84, 840, 1175
ScrFI CCNGG 3 cut(s) 593, 842, 858
SduI GDGCHC 1 cut(s) 212
SexAI ACCWGGT 1 cut(s) 591
SfaNI GCATC 2 cut(s) 236, 772
Sfr274I CTCGAG 1 cut(s) 1109
SinI GGWCC 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 1109
SmiMI CAYNNNNRTG 4 cut(s) 650, 675, 1083, 1130
SmlI CTYRAG 4 cut(s) 100, 943, 965, 1109
SmoI CTYRAG 4 cut(s) 100, 943, 965, 1109
Sse9I AATT 6 cut(s) 233, 274, 415, 519, 550, 982
SsiI CCGC 5 cut(s) 54, 85, 94, 97, 745
SspI AATATT 1 cut(s) 1120
SspMI CTAG 2 cut(s) 1028, 1161
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 591, 840, 856
StyI CCWWGG 2 cut(s) 213, 393
TaaI ACNGT 3 cut(s) 61, 488, 827
TaiI ACGT 3 cut(s) 204, 260, 314
TaqI TCGA 7 cut(s) 14, 198, 308, 354, 829, 1110, 1184
TasI AATT 6 cut(s) 233, 274, 415, 519, 550, 982
TatI WGTACW 2 cut(s) 849, 939
TauI GCSGC 2 cut(s) 56, 99
TfiI GAWTC 6 cut(s) 155, 265, 356, 384, 696, 891
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TseI GCWGC 6 cut(s) 131, 168, 343, 562, 614, 974
TspDTI ATGAA 6 cut(s) 656, 819, 883, 894, 972, 1169
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 2 cut(s) 233, 274
XbaI TCTAGA 1 cut(s) 1027
XhoI CTCGAG 1 cut(s) 1109
XmiI GTMKAC 1 cut(s) 1005
XmnI GAANNNNTTC 2 cut(s) 1094, 1231
XspI CTAG 2 cut(s) 1028, 1161
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.