Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001640

Physical Location & Seq

Genomic Coordinates Forward (+)

39169450 .. 39177800

Gene Structure 8351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGTCGTCGATTGGTGGAGTGGTGGCTATGGAGGAAGGCAATAGAGGCGCACCCATATTCTCTCCAGCAAGCTCTACTGTGACGTCCCGAGCTCCAAGGCATCTGTTGGATTCGGCTAAATGGGGTTGGATATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTGTAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGGATTATGAAGCAAGGAGATTCATTGATCACAGGGTTAAAGTAGCGAGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGAAGTACTTTCATGTGGACTCAAGAACCTGATATGAATGTTGAAGTCATCCATGGAGGAGAAGAGGAAATTGCAGATATCATGCCTAGAATTAAGACTGCCAATTTTCTTTTCACAGAAAGTGATTTGATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05034 ko05165 ko05203 map05034 map05165 map05203

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

5.23

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26040 AT5G26040
fragaria_vesca	FvH4_2g32010 FvH4_2g32010 FvH4_2g32010
malus_domestica	MD08G1043300.v1.1
prunus_persica	Prupe.1G413100_v2.0.a1 Prupe.1G413100_v2.0.a1
pyrus_communis	pycom08g03470
rosa_chinensis	RchiOBHm_Chr4g0398391 RchiOBHm_Chr5g0028711 RchiOBHm_Chr5g0034671 RchiOBHm_Chr5g0034681 RchiOBHm_Chr6g0269961 RchiOBHm_Chr6g0269981 RchiOBHm_Chr6g0310741
rosa_laevigata	RLG00000009592 RLG00000010461 RLG00000021179 RLG00000021847 RLG00000023632 RLG00000033108 RLG00000035916
rosa_multiflora	Rmu_sc0003720.1_g000019 Rmu_sc0003880.1_g000030 Rmu_sc0004094.1_g000044 Rmu_sc0004688.1_g000027 Rmu_ssc0000395.1_g000018
rosa_roxburghii	Rroxscaffold_1G00020030 Rroxscaffold_5G00363390 Rroxscaffold_7G00158280 Rroxscaffold_7G00164280
rosa_rugosa	Rorug05G0438800 Rorug06G0382900
rosa_samantha	Rh1CG016400 Rh2AG291700 Rh2DG220400 Rh2DG316200 Rh4AG321000 Rh4BG118000 Rh5AG451500 Rh6AG496700 Rh6BG175500 Rh6BG506600 Rh6DG498000
rosa_wichuraiana	Rw2G034110 Rw4G007180 Rw6G043220 Rw7G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	2 cut(s)	284, 313
AgsI	TTSAA	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	75, 95, 197, 301
AluI	AGCT	4 cut(s)	75, 95, 197, 301
Alw21I	GWGCWC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	393
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmcAI	AGTACT	2 cut(s)	284, 313
BmeT110I	CYCGRG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	51
BpuEI	CTTGAG	3 cut(s)	307, 312, 325
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	98, 150, 358
BseDI	CCNNGG	3 cut(s)	98, 150, 358
BseGI	GGATG	2 cut(s)	160, 354
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	208, 241
Bsp19I	CCATGG	2 cut(s)	150, 358
BssECI	CCNNGG	3 cut(s)	98, 150, 358
BssMI	GATC	2 cut(s)	208, 241
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	3 cut(s)	98, 150, 358
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	73
BstDSI	CCRYGG	2 cut(s)	150, 358
BstF5I	GGATG	2 cut(s)	160, 354
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	211, 244
BstMBI	GATC	2 cut(s)	208, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtgI	CCRYGG	2 cut(s)	150, 358
BtsCI	GGATG	2 cut(s)	160, 354
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	283, 312
CviAII	CATG	4 cut(s)	151, 319, 359, 388
CviJI	RGCY	7 cut(s)	29, 75, 95, 119, 187, 197, 301
CviKI_1	RGCY	7 cut(s)	29, 75, 95, 119, 187, 197, 301
CviQI	GTAC	2 cut(s)	283, 312
DpnI	GATC	2 cut(s)	210, 243
DpnII	GATC	2 cut(s)	208, 241
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	3 cut(s)	98, 150, 358
Eco24I	GRGCYC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	3 cut(s)	98, 150, 358
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	3 cut(s)	98, 150, 358
FaeI	CATG	4 cut(s)	154, 322, 362, 391
FaiI	YATR	9 cut(s)	32, 59, 136, 152, 222, 320, 341, 360, 389
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	4 cut(s)	150, 318, 358, 387
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	167, 341
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	154, 322, 362, 391
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	113, 141, 234, 325
Hpy166II	GTNNAC	2 cut(s)	166, 324
Hpy188III	TCNNGA	3 cut(s)	90, 304, 329
Hpy8I	GTNNAC	2 cut(s)	166, 324
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	177, 200, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	154, 322, 362, 391
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	208, 241
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	81, 232, 348
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	210, 243
MboI	GATC	2 cut(s)	208, 241
MboII	GAAGA	2 cut(s)	218, 380
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	172, 375, 396, 409
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	90, 110
MnlI	CCTC	4 cut(s)	28, 41, 356, 364
MseI	TTAA	2 cut(s)	252, 399
MwoI	GCNNNNNNNGC	1 cut(s)	48
NcoI	CCATGG	2 cut(s)	150, 358
NdeII	GATC	2 cut(s)	208, 241
NlaIII	CATG	4 cut(s)	154, 322, 362, 391
NmuCI	GTSAC	1 cut(s)	82
PfeI	GAWTC	3 cut(s)	113, 141, 234
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	284, 313
RsaNI	GTAC	2 cut(s)	283, 312
SacI	GAGCTC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	252, 399
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	208, 241
ScaI	AGTACT	2 cut(s)	284, 313
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	6 cut(s)	77, 89, 97, 199, 303, 337
SfaNI	GCATC	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	286, 304, 327
SmoI	CTYRAG	3 cut(s)	286, 304, 327
Sse9I	AATT	4 cut(s)	172, 375, 396, 409
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	97
StyI	CCWWGG	3 cut(s)	98, 150, 358
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	172, 375, 396, 409
TatI	WGTACW	2 cut(s)	282, 311
TfiI	GAWTC	3 cut(s)	113, 141, 234
Tru1I	TTAA	2 cut(s)	252, 399
Tru9I	TTAA	2 cut(s)	252, 399
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	226, 237, 307, 311, 356
XspI	CTAG	1 cut(s)	393
ZraI	GACGTC	1 cut(s)	87
ZrmI	AGTACT	2 cut(s)	284, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.