Rh6BG175500

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001640
Physical Location & Seq
Reverse (-)
29535007 .. 29537967
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG175500.1

Sequence Viewer

Length: 471 bp
ATGATTGATAGTTCTGGATGTCGTCGTCTATTGGTGGAGTGGTGGCTGTGGAGGAAGGCAATAGAGACGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCTAGCAAGCTCCACTTTGATGTCCCGAGCTTCAAGGTGGGGGAACTATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATAAATGTGGGAGGACTGGGTTTTATCATTATTGTAGGGGAAAAGGAGGTGGATTCTGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGAAGGGGCGGTTAAACATACTCAAGAGTGGCACTACAACAACCGAGTACTTGAGAAAGATGAAGCTCTTGAGAAGTACTTCCATGTGGACTGAAGAACCTGATATGAATGTTGAAGTCATCCATGGAGGAGAAGAGGAAATTGCAGATATGATGCCTAGAATTAAGCTGCCAATTTTCTTTTCACAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

9.58

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 2 cut(s) 326, 355
AgsI TTSAA 2 cut(s) 132, 392
AjuI GAANNNNNNNTTGG 1 cut(s) 442
AleI CACNNNNGTG 1 cut(s) 466
AluBI AGCT 5 cut(s) 108, 128, 161, 343, 445
AluI AGCT 5 cut(s) 108, 128, 161, 343, 445
Alw26I GTCTC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 86, 153, 445
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 123
BbvI GCAGC 3 cut(s) 98, 140, 432
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 101, 435
BisI GCNGC 3 cut(s) 87, 154, 446
BlsI GCNGC 3 cut(s) 88, 155, 447
BmcAI AGTACT 2 cut(s) 326, 355
BmeT110I CYCGRG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 210
BpuEI CTTGAG 3 cut(s) 284, 349, 367
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 3 cut(s) 23, 183, 396
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 3 cut(s) 98, 140, 432
BshFI GGCC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 92
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 106, 163
BstDEI CTNAG 1 cut(s) 79
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 3 cut(s) 23, 183, 396
BstHHI GCGC 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 98, 140, 432
BstXI CCANNNNNNTGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 3 cut(s) 23, 183, 396
Cac8I GCNNGC 2 cut(s) 106, 163
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 325, 354
CviAII CATG 2 cut(s) 361, 401
CviJI RGCY 9 cut(s) 46, 89, 108, 128, 153, 161, 183, 343, 445
CviKI_1 RGCY 9 cut(s) 46, 89, 108, 128, 153, 161, 183, 343, 445
CviQI GTAC 2 cut(s) 325, 354
DdeI CTNAG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 364, 404
FaiI YATR 8 cut(s) 186, 249, 269, 296, 362, 383, 402, 428
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 360, 400
Fnu4HI GCNGC 3 cut(s) 87, 154, 446
FokI GGATG 3 cut(s) 30, 190, 383
Fsp4HI GCNGC 3 cut(s) 87, 154, 446
FspBI CTAG 2 cut(s) 101, 435
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 87, 154, 446
HaeIII GGCC 1 cut(s) 183
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 2 cut(s) 364, 404
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 366
Hpy188III TCNNGA 4 cut(s) 15, 123, 301, 346
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 49, 274
HpyCH4V TGCA 4 cut(s) 156, 165, 267, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 364, 404
HspAI GCGC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 66, 186, 390
Lsp1109I GCAGC 3 cut(s) 98, 140, 432
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 101, 435
MboII GAAGA 2 cut(s) 383, 422
MluCI AATT 3 cut(s) 417, 438, 450
MnlI CCTC 6 cut(s) 45, 168, 189, 224, 398, 406
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 2 cut(s) 290, 441
MslI CAYNNNNRTG 3 cut(s) 116, 189, 466
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 400
NlaIII CATG 2 cut(s) 364, 404
OliI CACNNNNGTG 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 88, 155, 447
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 2 cut(s) 326, 355
RsaNI GTAC 2 cut(s) 325, 354
RseI CAYNNNNRTG 3 cut(s) 116, 189, 466
SaqAI TTAA 2 cut(s) 290, 441
SatI GCNGC 3 cut(s) 87, 154, 446
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 2 cut(s) 326, 355
SetI ASST 8 cut(s) 110, 130, 137, 163, 235, 345, 379, 447
SfaNI GCATC 1 cut(s) 420
SmiMI CAYNNNNRTG 3 cut(s) 116, 189, 466
SmlI CTYRAG 3 cut(s) 299, 328, 346
SmoI CTYRAG 3 cut(s) 299, 328, 346
Sse9I AATT 3 cut(s) 417, 438, 450
SsiI CCGC 1 cut(s) 286
SspMI CTAG 2 cut(s) 101, 435
StyI CCWWGG 1 cut(s) 400
TasI AATT 3 cut(s) 417, 438, 450
TatI WGTACW 2 cut(s) 324, 353
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 290, 441
Tru9I TTAA 2 cut(s) 290, 441
TseI GCWGC 3 cut(s) 86, 153, 445
TspDTI ATGAA 2 cut(s) 353, 398
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 2 cut(s) 101, 435
ZrmI AGTACT 2 cut(s) 326, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.