Rw4G007180

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001640
Physical Location & Seq
Reverse (-)
15034563 .. 15050554
15992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007180.1

Sequence Viewer

Length: 1008 bp
ATGAACATATTCATGCCATTCTGGAACAATGTCGTTTGCTGCTCCACCCAACTAAACGATGCCAAATCTCTCAGGCGCAGCCGTATTCTCTCCAGCAAGCTCTACTTTGACGTCCCGAGCTCTAAGGTTAAACCAGTATCTAAATTTGTCTGTGCTTTCAACGGGTCCGCTGTCAACGTCATCTTCAGCGGTTGCTACGACCATCTCAAGCGGAACAAAAAACTACTCCAAGATCACGAGCCACTACTCAGCTTCTCCGGTGACGTCACACAGCCGCTGGGGCATCCGTTCGATTCTGCTAAATGGGGTCGGATATGTAGATTCTTGTCCATGGATGATGTTGTGGACAAGAATTGCATTATAGAGCCAAAGGAAGCTGCAAAGGAAGATCTTGTGCATTTGCATACAGAAGCATACTTGAATTGTCTAAAGGAAAGTGCAGATGTGGCTATGATAATTAATGTACCTCCTGTTGCCTTGTTTCCAAATTGCTTTGTGGGGGAACCATCTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTGGGAGGACTGGGTTTATCATTGTTGTGGGGGAAAAGGAGGTGGATTATGTGCTTATACCGATATTTCTCTTTGCATACATTTTGTGCAGGTGCGGGTGATGATTATTAATCTTGATGCACATCAAGGAAATGGCCATGAAACAAATTTTGCTAATGACATCTATGTCCTAGATATGTACAACCCTGGAATATATCCATCTGATTATGAAGCAAGGAGATTCATTGATCAGAGGGTTAAAGTAGCGAGTGGCACTACAACAACTGAGTACTTGAGAAAGATGAAGCTCTTGAGGTATATACTTACAAGTCATTTGATGGTCTATAATGCTGGAACTGATATTCTACATGGCGATCCTCTAGGCAGGTTGAAGTCATCCATGGAGGAGAAGAGGAAATTGCAGATATCATGCCTAGAATTAAGGCTGCCAATTTTCTTTTCACAGAAAGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

335

Amino Acids

37.99

Weight (kDa)

7.53

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 191 - 318 2.9e-14 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 631
AasI GACNNNNNNGTC 1 cut(s) 716
AatII GACGTC 2 cut(s) 114, 267
Acc36I ACCTGC 2 cut(s) 631, 906
AciI CCGC 5 cut(s) 168, 189, 211, 275, 646
AclWI GGATC 1 cut(s) 899
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 2 cut(s) 143, 697
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 2 cut(s) 111, 264
AfaI GTAC 3 cut(s) 465, 731, 821
AgsI TTSAA 3 cut(s) 160, 421, 922
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 973, 1005
AluBI AGCT 6 cut(s) 100, 120, 252, 377, 522, 838
AluI AGCT 6 cut(s) 100, 120, 252, 377, 522, 838
Alw21I GWGCWC 1 cut(s) 122
AlwI GGATC 1 cut(s) 899
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 2 cut(s) 542, 685
ApeKI GCWGC 5 cut(s) 39, 78, 377, 514, 976
ApoI RAATTY 2 cut(s) 143, 697
AseI ATTAAT 2 cut(s) 459, 660
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 165, 542
AsuHPI GGTGA 2 cut(s) 272, 661
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 165
BalI TGGCCA 1 cut(s) 687
BanII GRGCYC 1 cut(s) 122
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 5 cut(s) 26, 90, 364, 501, 963
BccI CCATC 6 cut(s) 210, 514, 533, 553, 757, 862
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 738
BclI TGATCA 1 cut(s) 778
BfaI CTAG 3 cut(s) 722, 911, 965
BfuAI ACCTGC 2 cut(s) 631, 906
BglI GCCNNNNNGGC 1 cut(s) 280
BglII AGATCT 1 cut(s) 388
BisI GCNGC 6 cut(s) 40, 79, 275, 378, 515, 977
BlsI GCNGC 6 cut(s) 41, 80, 276, 379, 516, 978
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 165, 542
BmiI GGNNCC 2 cut(s) 166, 504
BmrFI CCNGG 1 cut(s) 738
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 3 cut(s) 49, 292, 658
BmuI ACTGGG 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 3 cut(s) 191, 844, 862
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 111, 264
BsaJI CCNNGG 3 cut(s) 330, 736, 930
BsaWI WCCGGW 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 134, 566
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 3 cut(s) 330, 736, 930
BseGI GGATG 4 cut(s) 283, 340, 544, 926
BseJI GATNNNNATC 1 cut(s) 672
BseMII CTCAG 3 cut(s) 85, 262, 807
BseNI ACTGG 2 cut(s) 134, 566
BseRI GAGGAG 1 cut(s) 950
BseXI GCAGC 5 cut(s) 26, 90, 364, 501, 963
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 2 cut(s) 459, 659
BshFI GGCC 2 cut(s) 544, 687
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 544, 687
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 122
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 4 cut(s) 232, 388, 778, 904
Bsp19I CCATGG 2 cut(s) 330, 930
BspACI CCGC 5 cut(s) 168, 189, 211, 275, 646
BspANI GGCC 2 cut(s) 544, 687
BspCNI CTCAG 3 cut(s) 84, 261, 808
BspLI GGNNCC 2 cut(s) 166, 504
BspMI ACCTGC 2 cut(s) 631, 906
BspPI GGATC 1 cut(s) 899
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 2 cut(s) 134, 566
BssECI CCNNGG 3 cut(s) 330, 736, 930
BssMI GATC 4 cut(s) 232, 388, 778, 904
BssNI GRCGYC 2 cut(s) 111, 264
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 2 cut(s) 330, 930
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 935
BstACI GRCGYC 2 cut(s) 111, 264
BstAPI GCANNNNNTGC 1 cut(s) 523
BstAUI TGTACA 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 98, 524
BstDEI CTNAG 4 cut(s) 71, 123, 248, 816
BstDSI CCRYGG 2 cut(s) 330, 930
BstF5I GGATG 4 cut(s) 283, 340, 544, 926
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 4 cut(s) 235, 391, 781, 907
BstMBI GATC 4 cut(s) 232, 388, 778, 904
BstMWI GCNNNNNNNGC 3 cut(s) 280, 446, 523
BstNI CCWGG 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 736
BstV1I GCAGC 5 cut(s) 26, 90, 364, 501, 963
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 544, 687
BtgI CCRYGG 2 cut(s) 330, 930
BtsCI GGATG 4 cut(s) 283, 340, 544, 926
BveI ACCTGC 2 cut(s) 631, 906
Cac8I GCNNGC 2 cut(s) 98, 524
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 165, 542
Csp6I GTAC 3 cut(s) 464, 730, 820
CviAII CATG 6 cut(s) 13, 331, 689, 899, 931, 960
CviQI GTAC 3 cut(s) 464, 730, 820
DdeI CTNAG 4 cut(s) 71, 123, 248, 816
DpnI GATC 4 cut(s) 234, 390, 780, 906
DpnII GATC 4 cut(s) 232, 388, 778, 904
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 330, 930
Eco24I GRGCYC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 957
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 736
EcoRV GATATC 1 cut(s) 957
EcoT14I CCWWGG 2 cut(s) 330, 930
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 330, 930
FaeI CATG 6 cut(s) 16, 334, 692, 902, 934, 963
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 1 cut(s) 98
FatI CATG 6 cut(s) 12, 330, 688, 898, 930, 959
FauI CCCGC 1 cut(s) 639
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 6 cut(s) 40, 79, 275, 378, 515, 977
FokI GGATG 4 cut(s) 270, 347, 551, 913
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 6 cut(s) 40, 79, 275, 378, 515, 977
FspBI CTAG 3 cut(s) 722, 911, 965
GlaI GCGC 1 cut(s) 77
GluI GCNGC 6 cut(s) 40, 79, 275, 378, 515, 977
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 544, 687
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 2 cut(s) 111, 264
Hin1II CATG 6 cut(s) 16, 334, 692, 902, 934, 963
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 520
HinfI GANTC 3 cut(s) 293, 321, 771
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 272, 661
Hpy166II GTNNAC 2 cut(s) 175, 346
Hpy188I TCNGA 3 cut(s) 312, 754, 783
Hpy188III TCNNGA 5 cut(s) 22, 115, 236, 665, 841
Hpy8I GTNNAC 2 cut(s) 175, 346
HpyCH4IV ACGT 3 cut(s) 111, 177, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 446, 523
HpyF3I CTNAG 4 cut(s) 71, 123, 248, 816
HpySE526I ACGT 3 cut(s) 111, 177, 264
Hsp92I GRCGYC 2 cut(s) 111, 264
Hsp92II CATG 6 cut(s) 16, 334, 692, 902, 934, 963
HspAI GCGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 4 cut(s) 232, 388, 778, 904
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 5 cut(s) 26, 90, 364, 501, 963
LweI GCATC 3 cut(s) 49, 292, 658
MaeI CTAG 3 cut(s) 722, 911, 965
MaeII ACGT 3 cut(s) 111, 177, 264
MaeIII GTNAC 2 cut(s) 260, 265
MalI GATC 4 cut(s) 234, 390, 780, 906
MboI GATC 4 cut(s) 232, 388, 778, 904
MboII GAAGA 3 cut(s) 175, 398, 952
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 9 cut(s) 143, 352, 421, 456, 487, 697, 947, 968, 981
MluNI TGGCCA 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 9 cut(s) 477, 529, 550, 584, 777, 837, 918, 928, 936
Mox20I TGGCCA 1 cut(s) 687
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 687
MseI TTAA 5 cut(s) 129, 459, 660, 789, 971
MslI CAYNNNNRTG 3 cut(s) 11, 550, 576
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 3 cut(s) 170, 189, 277
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 280, 446, 523
NcoI CCATGG 2 cut(s) 330, 930
NdeII GATC 4 cut(s) 232, 388, 778, 904
NlaIII CATG 6 cut(s) 16, 334, 692, 902, 934, 963
NlaIV GGNNCC 2 cut(s) 166, 504
NmuCI GTSAC 2 cut(s) 260, 265
PaqCI CACCTGC 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 293, 321, 771
PkrI GCNGC 6 cut(s) 41, 80, 276, 379, 516, 978
PshBI ATTAAT 2 cut(s) 459, 660
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 166, 504
PspPI GGNCC 2 cut(s) 165, 542
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 3 cut(s) 465, 731, 821
RsaNI GTAC 3 cut(s) 464, 730, 820
RseI CAYNNNNRTG 3 cut(s) 11, 550, 576
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 5 cut(s) 129, 459, 660, 789, 971
SatI GCNGC 6 cut(s) 40, 79, 275, 378, 515, 977
Sau3AI GATC 4 cut(s) 232, 388, 778, 904
Sau96I GGNCC 2 cut(s) 165, 542
ScaI AGTACT 1 cut(s) 821
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 3 cut(s) 49, 292, 658
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 3 cut(s) 11, 550, 576
SmlI CTYRAG 3 cut(s) 206, 823, 841
SmoI CTYRAG 3 cut(s) 206, 823, 841
Sse9I AATT 9 cut(s) 143, 352, 421, 456, 487, 697, 947, 968, 981
SsiI CCGC 5 cut(s) 168, 189, 211, 275, 646
SspMI CTAG 3 cut(s) 722, 911, 965
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 2 cut(s) 330, 930
TaiI ACGT 3 cut(s) 114, 180, 267
TaqI TCGA 1 cut(s) 291
TasI AATT 9 cut(s) 143, 352, 421, 456, 487, 697, 947, 968, 981
TatI WGTACW 2 cut(s) 729, 819
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 3 cut(s) 293, 321, 771
Tru1I TTAA 5 cut(s) 129, 459, 660, 789, 971
Tru9I TTAA 5 cut(s) 129, 459, 660, 789, 971
TseFI GTSAC 2 cut(s) 260, 265
TseI GCWGC 5 cut(s) 39, 78, 377, 514, 976
Tsp45I GTSAC 2 cut(s) 260, 265
TspDTI ATGAA 5 cut(s) 17, 705, 763, 774, 848
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 165
VspI ATTAAT 2 cut(s) 459, 660
XapI RAATTY 2 cut(s) 143, 697
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 722, 911, 965
ZraI GACGTC 2 cut(s) 112, 265
ZrmI AGTACT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.